Wall clock time and date at job start Tue Mar 31 2020 08:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 109.51452 * 2 1 4 4 C 1.38240 * 120.00050 * 269.72622 * 3 2 1 5 5 C 1.38237 * 119.99839 * 179.78641 * 4 3 2 6 6 C 1.38240 * 119.99842 * 0.46643 * 5 4 3 7 7 C 1.38232 * 120.00156 * 359.76868 * 6 5 4 8 8 C 1.38236 * 120.00209 * 0.02562 * 7 6 5 9 9 C 1.53303 * 109.51282 * 239.89784 * 2 1 3 10 10 N 1.47157 * 108.38262 * 292.37925 * 9 2 1 11 11 C 1.34777 * 120.98037 * 129.44410 * 10 9 2 12 12 O 1.21289 * 119.99730 * 359.97438 * 11 10 9 13 13 C 1.50689 * 120.00029 * 179.97438 * 11 10 9 14 14 C 1.53001 * 109.47186 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.47097 * 179.97438 * 14 13 11 16 16 H 1.07993 * 120.00098 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99690 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99761 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 120.00312 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.47191 * 90.00162 * 19 17 15 21 21 H 1.48499 * 109.46873 * 210.00181 * 19 17 15 22 22 H 1.48495 * 109.46713 * 329.99803 * 19 17 15 23 23 C 1.47148 * 118.03682 * 309.46438 * 10 9 2 24 24 C 1.53288 * 108.38520 * 50.53306 * 23 10 9 25 25 O 1.42969 * 109.51310 * 120.10311 * 2 1 3 26 26 H 1.09002 * 109.47153 * 59.99835 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00026 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.99579 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.99751 * 180.25410 * 5 4 3 31 31 H 1.08000 * 119.99302 * 179.78926 * 6 5 4 32 32 H 1.08002 * 119.99541 * 180.02562 * 7 6 5 33 33 H 1.08000 * 119.99993 * 179.97438 * 8 7 6 34 34 H 1.08995 * 109.68034 * 52.10006 * 9 2 1 35 35 H 1.08996 * 109.68221 * 172.65635 * 9 2 1 36 36 H 1.08996 * 109.47260 * 299.99681 * 13 11 10 37 37 H 1.08998 * 109.47220 * 59.99770 * 13 11 10 38 38 H 1.09000 * 109.47131 * 299.99620 * 14 13 11 39 39 H 1.08998 * 109.47096 * 59.99856 * 14 13 11 40 40 H 0.96997 * 119.99876 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.68375 * 170.26342 * 23 10 9 42 42 H 1.09006 * 109.68076 * 290.81616 * 23 10 9 43 43 H 1.09006 * 109.51190 * 67.62505 * 24 23 10 44 44 H 1.09007 * 109.51441 * 187.71989 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0334 1.4204 0.0000 4 6 2.2697 2.0700 -1.1972 5 6 2.7272 3.3744 -1.1971 6 6 2.9577 4.0260 0.0001 7 6 2.7260 3.3748 1.1972 8 6 2.2644 2.0718 1.1972 9 6 2.0420 -0.7247 -1.2501 10 7 1.6959 -2.1503 -1.1345 11 6 1.0708 -2.7961 -2.1389 12 8 0.7847 -2.2017 -3.1567 13 6 0.7272 -4.2564 -1.9971 14 6 0.0276 -4.7415 -3.2685 15 6 -0.3154 -6.2021 -3.1270 16 1 -0.0597 -6.7316 -2.2211 17 6 -0.9548 -6.8627 -4.1544 18 7 -1.2547 -8.1373 -4.0308 19 14 -1.3966 -5.9471 -5.7216 20 1 -0.2733 -6.0486 -6.6876 21 1 -2.6176 -6.5464 -6.3175 22 1 -1.6501 -4.5185 -5.4054 23 6 2.0520 -2.8498 0.1101 24 6 1.5396 -2.0216 1.2938 25 8 2.0075 -0.6759 1.1658 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 2.0939 1.5593 -2.1324 30 1 2.9079 3.8833 -2.1325 31 1 3.3184 5.0440 0.0000 32 1 2.9057 3.8841 2.1325 33 1 2.0838 1.5629 2.1325 34 1 1.5704 -0.3033 -2.1378 35 1 3.1241 -0.6143 -1.3211 36 1 1.6403 -4.8312 -1.8427 37 1 0.0635 -4.3923 -1.1433 38 1 -0.8856 -4.1667 -3.4225 39 1 0.6910 -4.6055 -4.1226 40 1 -1.7042 -8.6022 -4.7538 41 1 1.5872 -3.8356 0.1231 42 1 3.1352 -2.9533 0.1760 43 1 0.4496 -2.0290 1.2986 44 1 1.9106 -2.4495 2.2253 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584563449.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:10 Heat of formation + Delta-G solvation = -72.910718 kcal Electronic energy + Delta-G solvation = -24979.966292 eV Core-core repulsion = 21475.422545 eV Total energy + Delta-G solvation = -3504.543747 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 5.32 seconds Orbital eigenvalues (eV) -41.89644 -40.33604 -39.17165 -35.88532 -35.63217 -34.66894 -33.29200 -31.81692 -30.65609 -30.02054 -28.91295 -26.90391 -25.25653 -23.73829 -23.20692 -22.73923 -20.95722 -19.94610 -19.25896 -18.36723 -17.74657 -17.46808 -16.96087 -16.75439 -16.32685 -16.21088 -15.84128 -15.46115 -15.31328 -15.10404 -14.88146 -14.59060 -14.36378 -14.21157 -14.03550 -13.52463 -13.52073 -13.21584 -13.15233 -12.94956 -12.91149 -12.48154 -12.19567 -12.02676 -11.98252 -11.90796 -11.79770 -11.49340 -11.40947 -11.19004 -10.79152 -10.75226 -9.82472 -9.78685 -9.53180 -8.32596 -6.35348 0.37317 0.50091 1.31820 1.34015 1.48625 1.56923 1.82386 2.33676 2.56345 2.88594 3.03136 3.46395 3.63454 3.66766 3.81427 4.00373 4.06725 4.15963 4.18968 4.26779 4.29044 4.31312 4.40195 4.45927 4.51148 4.55171 4.65785 4.68716 4.71442 4.82644 4.86333 4.98020 5.04250 5.09699 5.16393 5.27705 5.38783 5.41059 5.57451 5.58747 5.60940 5.63043 6.07953 6.12468 6.20687 6.27366 6.70676 7.11598 7.30105 8.82898 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.027327 B = 0.003175 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.399436 B = 8815.626895 C = 9510.759415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.155 3.845 3 C -0.087 4.087 4 C -0.127 4.127 5 C -0.126 4.126 6 C -0.121 4.121 7 C -0.125 4.125 8 C -0.102 4.102 9 C 0.093 3.907 10 N -0.615 5.615 11 C 0.516 3.484 12 O -0.582 6.582 13 C -0.113 4.113 14 C 0.006 3.994 15 C -0.527 4.527 16 H 0.053 0.947 17 C 0.015 3.985 18 N -0.942 5.942 19 Si 0.936 3.064 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.262 1.262 23 C 0.064 3.936 24 C 0.043 3.957 25 O -0.371 6.371 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.120 0.880 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.131 0.869 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.009 0.991 39 H 0.007 0.993 40 H 0.267 0.733 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.518 23.705 14.633 29.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.115 3.885 3 C -0.087 4.087 4 C -0.146 4.146 5 C -0.144 4.144 6 C -0.139 4.139 7 C -0.143 4.143 8 C -0.120 4.120 9 C -0.030 4.030 10 N -0.349 5.349 11 C 0.307 3.693 12 O -0.461 6.461 13 C -0.152 4.152 14 C -0.032 4.032 15 C -0.565 4.565 16 H 0.071 0.929 17 C -0.183 4.183 18 N -0.583 5.583 19 Si 0.761 3.239 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.057 4.057 24 C -0.034 4.034 25 O -0.290 6.290 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.138 0.862 30 H 0.158 0.842 31 H 0.164 0.836 32 H 0.163 0.837 33 H 0.149 0.851 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.028 0.972 39 H 0.025 0.975 40 H 0.076 0.924 41 H 0.130 0.870 42 H 0.109 0.891 43 H 0.080 0.920 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.406 23.942 14.145 29.356 hybrid contribution -0.549 -0.423 -1.236 1.417 sum 8.857 23.519 12.910 28.253 Atomic orbital electron populations 1.22299 0.94273 1.02573 1.03220 1.20341 0.93426 0.89451 0.85327 1.19442 1.01408 0.93289 0.94573 1.21167 1.00070 0.96050 0.97268 1.21388 0.99189 0.94237 0.99542 1.21535 0.99152 1.01013 0.92174 1.21482 0.99012 0.94459 0.99360 1.21111 0.98283 0.94976 0.97651 1.22285 1.00704 0.80956 0.99074 1.48241 1.58889 1.10566 1.17178 1.21307 0.75713 0.90194 0.82081 1.90627 1.55159 1.69628 1.30725 1.21511 1.02842 0.89785 1.01097 1.19222 0.95483 0.94283 0.94197 1.21398 1.37704 0.94633 1.02788 0.92898 1.25773 0.95320 0.95421 1.01772 1.70017 1.43083 1.10611 1.34551 0.85865 0.78338 0.79616 0.80115 1.19444 1.20328 1.18686 1.22759 1.02619 0.97724 0.82644 1.23245 0.99772 0.81321 0.99063 1.87998 1.72373 1.26226 1.42442 0.91991 0.90462 0.92280 0.86216 0.84196 0.83606 0.83706 0.85126 0.89661 0.90543 0.87914 0.87771 0.97244 0.97475 0.92365 0.87021 0.89120 0.92000 0.84271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.73 8.07 71.98 0.58 -3.15 16 2 C 0.15 3.41 0.94 -11.44 -0.01 3.40 16 3 C -0.09 -1.80 4.84 -19.86 -0.10 -1.90 16 4 C -0.13 -2.56 9.15 22.27 0.20 -2.35 16 5 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 6 C -0.12 -1.70 10.05 22.27 0.22 -1.48 16 7 C -0.13 -1.85 10.05 22.27 0.22 -1.62 16 8 C -0.10 -1.87 9.35 22.27 0.21 -1.66 16 9 C 0.09 2.39 4.32 86.36 0.37 2.76 16 10 N -0.61 -16.92 2.54 -817.36 -2.07 -18.99 16 11 C 0.52 18.76 7.71 87.65 0.68 19.43 16 12 O -0.58 -25.91 15.45 -3.06 -0.05 -25.95 16 13 C -0.11 -4.24 4.01 29.84 0.12 -4.12 16 14 C 0.01 0.30 3.33 29.85 0.10 0.40 16 15 C -0.53 -30.14 9.66 25.60 0.25 -29.89 16 16 H 0.05 3.16 7.99 -2.91 -0.02 3.13 16 17 C 0.01 0.89 5.47 84.65 0.46 1.35 16 18 N -0.94 -58.66 13.96 21.45 0.30 -58.36 16 19 Si 0.94 46.75 27.47 68.60 1.88 48.63 16 20 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 22 H -0.26 -13.07 6.54 99.48 0.65 -12.42 16 23 C 0.06 1.26 6.54 86.35 0.56 1.83 16 24 C 0.04 0.71 6.60 72.08 0.48 1.18 16 25 O -0.37 -7.61 9.22 -148.98 -1.37 -8.98 16 26 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.06 1.42 6.11 -2.38 -0.01 1.41 16 29 H 0.12 2.45 6.38 -2.91 -0.02 2.43 16 30 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 31 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 32 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 33 H 0.13 2.24 7.49 -2.91 -0.02 2.22 16 34 H 0.09 2.50 5.94 -2.39 -0.01 2.48 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.10 3.51 8.02 -2.39 -0.02 3.49 16 37 H 0.10 3.50 7.66 -2.39 -0.02 3.49 16 38 H 0.01 0.48 7.16 -2.39 -0.02 0.46 16 39 H 0.01 0.36 7.53 -2.39 -0.02 0.34 16 40 H 0.27 15.58 8.31 -92.71 -0.77 14.80 16 41 H 0.11 2.02 6.05 -2.39 -0.01 2.01 16 42 H 0.09 1.56 8.14 -2.38 -0.02 1.55 16 43 H 0.06 1.06 6.25 -2.38 -0.01 1.05 16 44 H 0.14 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -73.40 349.29 4.20 -69.20 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.93 Total: 12.09 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: 4.58 Total: -17.64 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -1.78 Total: -77.35 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -1.42 Total: -34.93 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.88 Total: 48.63 kcal Total: -73.40 4.20 -69.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584563449.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.706 kcal (2) G-P(sol) polarization free energy of solvation -73.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.32 seconds