Wall clock time and date at job start Tue Mar 31 2020 09:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47210 * 2 1 4 4 C 1.50703 * 109.47498 * 179.97438 * 3 2 1 5 5 C 1.38350 * 119.85489 * 89.99614 * 4 3 2 6 6 C 1.37960 * 120.14937 * 180.02562 * 5 4 3 7 7 C 1.39578 * 119.84916 * 0.03097 * 6 5 4 8 8 C 1.47844 * 120.14432 * 179.97438 * 7 6 5 9 9 O 1.21554 * 119.99873 * 352.51298 * 8 7 6 10 10 N 1.34780 * 119.99834 * 172.50869 * 8 7 6 11 11 C 1.47018 * 125.64922 * 5.23646 * 10 8 7 12 12 C 1.54324 * 107.26888 * 181.02390 * 11 10 8 13 13 C 1.55154 * 102.94467 * 22.19045 * 12 11 10 14 14 O 1.42902 * 111.00483 * 82.57603 * 13 12 11 15 15 C 1.50707 * 111.00467 * 206.42511 * 13 12 11 16 16 H 1.07993 * 119.99926 * 120.78646 * 15 13 12 17 17 C 1.37870 * 119.99911 * 300.79259 * 15 13 12 18 18 N 1.31510 * 120.00190 * 177.89969 * 17 15 13 19 19 Si 1.86806 * 120.00262 * 357.89297 * 17 15 13 20 20 H 1.48504 * 109.46726 * 93.61346 * 19 17 15 21 21 H 1.48496 * 109.47442 * 213.61497 * 19 17 15 22 22 H 1.48500 * 109.46842 * 333.61794 * 19 17 15 23 23 C 1.47430 * 125.64618 * 185.19010 * 10 8 7 24 24 C 1.39580 * 119.71039 * 0.24302 * 7 6 5 25 25 C 1.37958 * 119.85253 * 359.47665 * 24 7 6 26 26 H 1.09006 * 109.47121 * 300.00292 * 1 2 3 27 27 H 1.09001 * 109.46976 * 59.99764 * 1 2 3 28 28 H 1.08998 * 109.47275 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47460 * 239.99631 * 2 1 3 30 30 H 1.09000 * 109.46772 * 119.99725 * 2 1 3 31 31 H 1.09006 * 109.47317 * 59.99828 * 3 2 1 32 32 H 1.09001 * 109.47344 * 300.00011 * 3 2 1 33 33 H 1.07998 * 119.93023 * 0.02927 * 5 4 3 34 34 H 1.08004 * 120.07741 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.88417 * 61.60684 * 11 10 8 36 36 H 1.09001 * 109.88171 * 300.43844 * 11 10 8 37 37 H 1.09007 * 110.71831 * 263.82762 * 12 11 10 38 38 H 1.08996 * 110.72040 * 140.56060 * 12 11 10 39 39 H 0.96700 * 113.99770 * 180.02562 * 14 13 12 40 40 H 0.97000 * 120.00759 * 179.97438 * 18 17 15 41 41 H 1.09006 * 110.36354 * 37.07431 * 23 10 8 42 42 H 1.08998 * 110.36592 * 274.74877 * 23 10 8 43 43 H 1.07997 * 120.07087 * 179.72849 * 24 7 6 44 44 H 1.08001 * 119.92689 * 180.27000 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2362 1.4423 -1.1990 6 6 5.6158 1.4418 -1.2055 7 6 6.3162 1.4409 0.0018 8 6 7.7947 1.4399 0.0025 9 8 8.4028 1.3026 -1.0410 10 7 8.4681 1.5912 1.1601 11 6 7.8657 1.6574 2.4996 12 6 9.0150 1.8601 3.5093 13 6 10.1448 2.4631 2.6334 14 8 9.9691 3.8718 2.4691 15 6 11.5011 2.1542 3.2133 16 1 12.2241 1.6020 2.6314 17 6 11.8187 2.5763 4.4868 18 7 12.9868 2.2713 5.0085 19 14 10.5901 3.5818 5.4712 20 1 9.7797 2.6759 6.3243 21 1 11.3180 4.5506 6.3296 22 1 9.6958 4.3182 4.5421 23 6 9.9311 1.7168 1.2930 24 6 5.6147 1.4354 1.2086 25 6 4.2352 1.4417 1.2010 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.6931 1.4425 -2.1325 34 1 6.1527 1.4412 -2.1426 35 1 7.3414 0.7267 2.7167 36 1 7.1727 2.4970 2.5532 37 1 9.3256 0.9067 3.9367 38 1 8.7209 2.5578 4.2934 39 1 10.6513 4.2928 1.9284 40 1 13.2105 2.5686 5.9043 41 1 10.3385 2.2982 0.4658 42 1 10.3947 0.7310 1.3294 43 1 6.1508 1.4302 2.1461 44 1 3.6912 1.4418 2.1340 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592841973.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:10 Heat of formation + Delta-G solvation = -40.961441 kcal Electronic energy + Delta-G solvation = -24700.963972 eV Core-core repulsion = 21197.805650 eV Total energy + Delta-G solvation = -3503.158322 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.38805 -38.85329 -37.45648 -35.32267 -34.67194 -32.48932 -31.58910 -31.07748 -30.29275 -28.52037 -27.08670 -25.21702 -23.64819 -22.62980 -22.13083 -20.99768 -20.01957 -19.64844 -17.54041 -17.14864 -16.16648 -15.78275 -15.48167 -15.24137 -14.95641 -14.69922 -14.30622 -14.20656 -13.91717 -13.60516 -13.53525 -13.34826 -13.06576 -12.84647 -12.50459 -12.34786 -12.26952 -12.08764 -11.76736 -11.49627 -11.34943 -11.20238 -11.16587 -11.01433 -10.78315 -10.59344 -10.30899 -10.11367 -9.56269 -9.05161 -9.01120 -8.80021 -8.76985 -8.62773 -8.10599 -6.26791 -4.39649 0.86084 1.32461 3.00161 3.22861 3.33041 3.38250 3.57026 3.88180 4.36018 4.44351 4.56858 4.69680 4.77556 4.82578 4.91049 5.01106 5.05945 5.13146 5.16137 5.26994 5.38322 5.42679 5.45609 5.50168 5.50834 5.64301 5.66769 5.74015 5.82261 5.86904 5.94183 5.97001 6.04488 6.26115 6.33751 6.39137 6.45279 6.50915 6.56394 6.67048 6.85492 7.06129 7.40273 7.87399 8.14351 8.45074 8.69788 8.86170 9.35316 10.83464 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.024692 B = 0.003335 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.715026 B = 8394.496800 C = 9135.835857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.083 4.083 4 C -0.065 4.065 5 C -0.130 4.130 6 C -0.060 4.060 7 C -0.128 4.128 8 C 0.566 3.434 9 O -0.550 6.550 10 N -0.601 5.601 11 C 0.094 3.906 12 C -0.129 4.129 13 C 0.217 3.783 14 O -0.572 6.572 15 C -0.552 4.552 16 H 0.080 0.920 17 C 0.088 3.912 18 N -0.885 5.885 19 Si 0.869 3.131 20 H -0.284 1.284 21 H -0.298 1.298 22 H -0.222 1.222 23 C 0.094 3.906 24 C -0.120 4.120 25 C -0.128 4.128 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.125 0.875 34 H 0.133 0.867 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.366 0.634 40 H 0.267 0.733 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.163 0.837 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.144 -2.138 -6.781 23.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.120 4.120 4 C -0.065 4.065 5 C -0.148 4.148 6 C -0.079 4.079 7 C -0.131 4.131 8 C 0.356 3.644 9 O -0.430 6.430 10 N -0.332 5.332 11 C -0.029 4.029 12 C -0.167 4.167 13 C 0.176 3.824 14 O -0.379 6.379 15 C -0.589 4.589 16 H 0.098 0.902 17 C -0.117 4.117 18 N -0.521 5.521 19 Si 0.696 3.304 20 H -0.211 1.211 21 H -0.225 1.225 22 H -0.145 1.145 23 C -0.028 4.028 24 C -0.137 4.137 25 C -0.146 4.146 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.143 0.857 34 H 0.151 0.849 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.214 0.786 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.180 0.820 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -22.255 -2.328 -6.883 23.411 hybrid contribution 0.048 0.513 0.373 0.637 sum -22.207 -1.814 -6.509 23.213 Atomic orbital electron populations 1.21790 0.95654 1.01737 1.01837 1.21512 0.95650 0.95957 1.02593 1.20688 0.90762 0.97531 1.03042 1.20102 0.95710 0.97416 0.93320 1.20959 0.93741 1.02447 0.97666 1.21248 0.93766 0.95187 0.97707 1.19974 0.93015 1.05682 0.94428 1.17950 0.86744 0.77140 0.82598 1.90734 1.69922 1.51259 1.31058 1.48420 1.09082 1.70222 1.05497 1.22532 0.97147 1.00125 0.83068 1.23050 0.94323 1.02183 0.97143 1.20112 0.94039 0.79054 0.89178 1.86481 1.54521 1.22527 1.74352 1.21121 0.97817 1.38884 1.01083 0.90231 1.24954 0.95179 0.94332 0.97235 1.69920 1.21544 1.44363 1.16288 0.87165 0.82338 0.81020 0.79829 1.21105 1.22497 1.14453 1.23066 0.78062 1.01498 1.00177 1.22864 0.94982 0.96120 0.99770 1.21023 0.93974 1.01955 0.97605 0.92667 0.92719 0.92653 0.91773 0.91716 0.90847 0.90915 0.85715 0.84884 0.91171 0.90816 0.89034 0.90575 0.78636 0.92291 0.91129 0.90685 0.82035 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.84 5.92 -26.74 -0.16 -1.00 16 3 C -0.08 -0.62 5.34 -27.88 -0.15 -0.77 16 4 C -0.07 -0.67 5.14 -104.53 -0.54 -1.20 16 5 C -0.13 -1.43 9.68 -39.64 -0.38 -1.81 16 6 C -0.06 -0.82 9.59 -39.18 -0.38 -1.20 16 7 C -0.13 -1.97 5.87 -104.97 -0.62 -2.59 16 8 C 0.57 10.62 7.81 -12.33 -0.10 10.52 16 9 O -0.55 -11.87 16.67 5.32 0.09 -11.78 16 10 N -0.60 -11.16 3.33 -175.17 -0.58 -11.74 16 11 C 0.09 1.52 4.87 -3.07 -0.01 1.50 16 12 C -0.13 -2.50 4.77 -24.90 -0.12 -2.62 16 13 C 0.22 4.71 0.70 -89.62 -0.06 4.64 16 14 O -0.57 -12.29 10.46 -35.23 -0.37 -12.66 16 15 C -0.55 -14.28 8.84 -34.44 -0.30 -14.58 16 16 H 0.08 2.25 8.04 -52.49 -0.42 1.83 16 17 C 0.09 2.39 5.45 -17.82 -0.10 2.29 16 18 N -0.89 -25.65 13.96 55.43 0.77 -24.87 16 19 Si 0.87 20.33 24.17 -169.99 -4.11 16.22 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.22 -5.04 5.17 56.52 0.29 -4.75 16 23 C 0.09 1.92 6.07 -2.53 -0.02 1.90 16 24 C -0.12 -1.56 8.60 -39.18 -0.34 -1.90 16 25 C -0.13 -1.39 9.68 -39.64 -0.38 -1.77 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 33 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.13 1.81 7.67 -52.48 -0.40 1.41 16 35 H 0.07 0.95 6.81 -51.93 -0.35 0.60 16 36 H 0.07 1.11 6.66 -51.93 -0.35 0.77 16 37 H 0.09 1.76 8.03 -51.92 -0.42 1.34 16 38 H 0.08 1.49 4.99 -51.93 -0.26 1.23 16 39 H 0.37 7.01 9.06 45.56 0.41 7.42 16 40 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.07 1.46 8.09 -51.93 -0.42 1.04 16 42 H 0.07 1.57 8.03 -51.93 -0.42 1.15 16 43 H 0.16 2.00 2.77 -57.08 -0.16 1.84 16 44 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 347.66 15.07 5.24 5.24 Total: -1.00 -31.43 347.66 -8.07 -39.50 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -5.83 Total: 9.19 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -3.28 Total: -9.10 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.19 Total: -36.62 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.28 Total: -24.44 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.11 Total: 16.22 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.43 -8.07 -39.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841973.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.465 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds