Wall clock time and date at job start Tue Mar 31 2020 08:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47513 * 2 1 4 4 C 1.38232 * 120.00094 * 89.99389 * 3 2 1 5 5 C 1.38235 * 120.00153 * 180.02562 * 4 3 2 6 6 C 1.38235 * 119.99741 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99848 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47343 * 89.99941 * 7 6 5 9 9 O 1.21277 * 120.00244 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00088 * 179.97438 * 8 7 6 11 11 C 1.47021 * 125.64696 * 0.04337 * 10 8 7 12 12 C 1.54326 * 107.27002 * 181.01910 * 11 10 8 13 13 C 1.55151 * 102.94313 * 22.19392 * 12 11 10 14 14 O 1.42901 * 111.00842 * 82.56580 * 13 12 11 15 15 C 1.50698 * 111.00641 * 206.42337 * 13 12 11 16 16 H 1.07993 * 120.00138 * 112.19363 * 15 13 12 17 17 C 1.37875 * 119.99529 * 292.19405 * 15 13 12 18 18 N 1.31514 * 120.00358 * 359.97438 * 17 15 13 19 19 Si 1.86808 * 119.99716 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47110 * 90.00108 * 19 17 15 21 21 H 1.48504 * 109.47044 * 209.99832 * 19 17 15 22 22 H 1.48500 * 109.47158 * 329.99853 * 19 17 15 23 23 C 1.47421 * 125.64852 * 179.97438 * 10 8 7 24 24 C 1.38229 * 120.00031 * 0.25124 * 6 5 4 25 25 C 1.38231 * 120.00301 * 359.47423 * 24 6 5 26 26 H 1.08994 * 109.47227 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47321 * 300.00639 * 1 2 3 28 28 H 1.09008 * 109.46655 * 60.00313 * 1 2 3 29 29 H 1.08997 * 109.47421 * 239.99907 * 2 1 3 30 30 H 1.09008 * 109.47101 * 119.99980 * 2 1 3 31 31 H 1.07998 * 120.00211 * 359.97438 * 4 3 2 32 32 H 1.08001 * 120.00013 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47190 * 329.99636 * 7 6 5 34 34 H 1.09001 * 109.46692 * 210.00070 * 7 6 5 35 35 H 1.08996 * 109.88310 * 300.43775 * 11 10 8 36 36 H 1.09002 * 109.88672 * 61.44815 * 11 10 8 37 37 H 1.09000 * 110.72348 * 263.82382 * 12 11 10 38 38 H 1.09003 * 110.71705 * 140.55404 * 12 11 10 39 39 H 0.96708 * 113.99322 * 67.80350 * 14 13 12 40 40 H 0.96999 * 120.00046 * 179.97438 * 18 17 15 41 41 H 1.09002 * 110.36865 * 37.07626 * 23 10 8 42 42 H 1.09001 * 110.37117 * 274.74944 * 23 10 8 43 43 H 1.08002 * 119.99867 * 179.72791 * 24 6 5 44 44 H 1.07994 * 120.00790 * 180.27224 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7231 3.3759 1.1971 6 6 2.9526 4.0278 -0.0001 7 6 3.4540 5.4490 -0.0001 8 6 4.9609 5.4501 -0.0005 9 8 5.5682 4.4003 -0.0004 10 7 5.6340 6.6178 -0.0012 11 6 5.0268 7.9568 -0.0005 12 6 6.1794 8.9826 -0.0278 13 6 7.3598 8.1635 -0.6134 14 8 7.2943 8.1187 -2.0402 15 6 8.6832 8.7180 -0.1527 16 1 9.3053 8.1438 0.5178 17 6 9.0996 9.9584 -0.5873 18 7 8.3423 10.6574 -1.4042 19 14 10.7398 10.6461 -0.0157 20 1 11.8070 10.2316 -0.9614 21 1 10.6664 12.1287 0.0288 22 1 11.0497 10.1249 1.3398 23 6 7.1009 6.7640 -0.0011 24 6 2.7169 3.3781 -1.1971 25 6 2.2619 2.0728 -1.1972 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 2.0822 1.5636 2.1324 32 1 2.9027 3.8852 2.1324 33 1 3.0905 5.9625 0.8901 34 1 3.0899 5.9626 -0.8899 35 1 4.3999 8.0799 -0.8836 36 1 4.4283 8.0921 0.9004 37 1 6.4120 9.3283 0.9794 38 1 5.9329 9.8224 -0.6776 39 1 7.4499 8.9719 -2.4680 40 1 8.6352 11.5302 -1.7097 41 1 7.5593 5.9900 -0.6167 42 1 7.4868 6.7180 1.0173 43 1 2.8920 3.8889 -2.1324 44 1 2.0819 1.5636 -2.1324 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843376.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:55 Heat of formation + Delta-G solvation = -75.405922 kcal Electronic energy + Delta-G solvation = -24314.545433 eV Core-core repulsion = 20809.893486 eV Total energy + Delta-G solvation = -3504.651947 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 26.27 seconds Orbital eigenvalues (eV) -39.92399 -38.98525 -37.19982 -34.63939 -34.29090 -32.16346 -31.41161 -30.87602 -29.78279 -28.42157 -27.12653 -25.00848 -23.33987 -22.70096 -22.19645 -20.65291 -19.72246 -18.71846 -17.27210 -16.60204 -16.21622 -15.87019 -15.31002 -15.02937 -14.97152 -14.60001 -14.16721 -13.91481 -13.83894 -13.57215 -13.29899 -13.07054 -12.94315 -12.37602 -12.18313 -12.07356 -11.89861 -11.69289 -11.60483 -11.35675 -11.34302 -11.26818 -10.92759 -10.86714 -10.83715 -10.62640 -10.49695 -10.06665 -9.47329 -9.38085 -8.84013 -8.70713 -8.44609 -8.23734 -7.97376 -6.32562 -4.40160 1.36161 1.48651 3.10621 3.18267 3.25709 3.28725 3.50989 3.91018 4.24307 4.62505 4.72939 4.84435 4.93033 4.98366 5.03736 5.12453 5.17908 5.32854 5.37156 5.48749 5.53387 5.60089 5.61576 5.68837 5.74836 5.81331 5.85513 5.94917 6.00113 6.08906 6.12873 6.28046 6.43191 6.45652 6.62686 6.65236 6.68198 6.86560 6.96188 7.06462 7.27602 7.30214 7.71107 7.96922 8.15360 8.61330 8.68400 9.28904 9.45574 10.75159 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.043689 B = 0.002607 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.742362 B =10739.420588 C =10818.328764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.089 4.089 4 C -0.118 4.118 5 C -0.103 4.103 6 C -0.061 4.061 7 C -0.099 4.099 8 C 0.524 3.476 9 O -0.547 6.547 10 N -0.608 5.608 11 C 0.100 3.900 12 C -0.139 4.139 13 C 0.249 3.751 14 O -0.584 6.584 15 C -0.535 4.535 16 H 0.065 0.935 17 C 0.072 3.928 18 N -0.898 5.898 19 Si 0.904 3.096 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.120 3.880 24 C -0.102 4.102 25 C -0.117 4.117 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.385 0.615 40 H 0.269 0.731 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.120 0.880 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.218 -11.029 3.062 19.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.089 4.089 4 C -0.136 4.136 5 C -0.121 4.121 6 C -0.062 4.062 7 C -0.139 4.139 8 C 0.312 3.688 9 O -0.425 6.425 10 N -0.341 5.341 11 C -0.023 4.023 12 C -0.178 4.178 13 C 0.208 3.792 14 O -0.395 6.395 15 C -0.573 4.573 16 H 0.084 0.916 17 C -0.130 4.130 18 N -0.538 5.538 19 Si 0.731 3.269 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.002 4.002 24 C -0.120 4.120 25 C -0.135 4.135 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.237 0.763 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.138 0.862 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.071 -12.104 3.085 19.575 hybrid contribution 1.005 1.300 0.176 1.652 sum -14.066 -10.804 3.261 18.034 Atomic orbital electron populations 1.21745 0.94900 1.01461 1.02189 1.20521 0.95989 0.92910 1.02713 1.19831 0.99744 0.96039 0.93292 1.20911 1.00577 0.94758 0.97351 1.20948 0.98879 0.94881 0.97387 1.19328 0.98379 0.94913 0.93542 1.20661 0.93249 0.95065 1.04928 1.20010 0.89063 0.82710 0.77031 1.90683 1.70214 1.30720 1.50908 1.48624 1.08654 1.05422 1.71427 1.22161 0.97508 0.83006 0.99657 1.23201 0.94965 0.97425 1.02217 1.19588 0.92127 0.87969 0.79536 1.86103 1.94622 1.38625 1.20114 1.21486 1.03937 1.02481 1.29400 0.91642 1.24995 0.97565 0.96233 0.94255 1.69558 1.37445 1.13424 1.33376 0.86395 0.83249 0.77908 0.79311 1.20370 1.21030 1.19693 1.22376 0.78290 0.99428 1.00103 1.20981 0.98637 0.94868 0.97506 1.20926 1.00485 0.94716 0.97382 0.92595 0.92602 0.92587 0.91170 0.91196 0.86381 0.86324 0.88378 0.88240 0.92381 0.92863 0.91348 0.89866 0.76259 0.92063 0.91165 0.91204 0.86210 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.89 37.16 0.37 -0.71 16 2 C -0.08 -0.73 6.06 -27.88 -0.17 -0.90 16 3 C -0.09 -1.02 5.13 -104.62 -0.54 -1.56 16 4 C -0.12 -1.41 9.70 -39.58 -0.38 -1.79 16 5 C -0.10 -1.36 9.70 -39.58 -0.38 -1.74 16 6 C -0.06 -0.87 4.37 -104.62 -0.46 -1.33 16 7 C -0.10 -1.39 5.02 -29.03 -0.15 -1.53 16 8 C 0.52 9.91 7.84 -10.99 -0.09 9.82 16 9 O -0.55 -12.29 16.29 5.56 0.09 -12.20 16 10 N -0.61 -11.99 3.33 -170.51 -0.57 -12.56 16 11 C 0.10 1.75 6.49 -3.06 -0.02 1.73 16 12 C -0.14 -2.92 5.64 -24.90 -0.14 -3.06 16 13 C 0.25 5.96 0.89 -89.61 -0.08 5.88 16 14 O -0.58 -14.95 13.18 -35.23 -0.46 -15.42 16 15 C -0.53 -13.79 8.25 -34.44 -0.28 -14.07 16 16 H 0.07 1.68 7.77 -52.49 -0.41 1.28 16 17 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 18 N -0.90 -22.85 10.79 55.43 0.60 -22.25 16 19 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 C 0.12 2.69 6.08 -2.52 -0.02 2.68 16 24 C -0.10 -1.38 9.70 -39.59 -0.38 -1.77 16 25 C -0.12 -1.42 9.70 -39.58 -0.38 -1.81 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 30 H 0.07 0.56 8.09 -51.92 -0.42 0.14 16 31 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 32 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.10 1.15 8.09 -51.93 -0.42 0.73 16 34 H 0.10 1.24 8.08 -51.93 -0.42 0.82 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.43 8.03 -51.93 -0.42 1.01 16 38 H 0.08 1.82 7.85 -51.93 -0.41 1.41 16 39 H 0.39 9.92 6.93 45.56 0.32 10.23 16 40 H 0.27 6.56 8.31 -40.82 -0.34 6.23 16 41 H 0.07 1.70 8.04 -51.93 -0.42 1.28 16 42 H 0.07 1.52 8.01 -51.93 -0.42 1.11 16 43 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 44 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 364.44 15.07 5.49 5.49 Total: -1.00 -29.46 364.44 -9.44 -38.90 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -6.37 Total: 11.51 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -3.20 Total: -8.45 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.03 Total: -34.81 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.37 Total: -27.62 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.46 -9.44 -38.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843376.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.510 kcal (2) G-P(sol) polarization free energy of solvation -29.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 26.27 seconds