Wall clock time and date at job start Tue Mar 31 2020 08:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47513 * 2 1 4 4 C 1.38232 * 120.00094 * 89.99389 * 3 2 1 5 5 C 1.38235 * 120.00153 * 180.02562 * 4 3 2 6 6 C 1.38235 * 119.99741 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99848 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47343 * 89.99941 * 7 6 5 9 9 O 1.21277 * 120.00244 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00088 * 179.97438 * 8 7 6 11 11 C 1.47021 * 125.64696 * 0.04337 * 10 8 7 12 12 C 1.54326 * 107.27002 * 181.01910 * 11 10 8 13 13 C 1.55151 * 102.94313 * 22.19392 * 12 11 10 14 14 O 1.42901 * 111.00842 * 82.56580 * 13 12 11 15 15 C 1.50698 * 111.00641 * 206.42337 * 13 12 11 16 16 H 1.07993 * 120.00138 * 112.19363 * 15 13 12 17 17 C 1.37875 * 119.99529 * 292.19405 * 15 13 12 18 18 N 1.31514 * 120.00358 * 359.97438 * 17 15 13 19 19 Si 1.86808 * 119.99716 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47110 * 90.00108 * 19 17 15 21 21 H 1.48504 * 109.47044 * 209.99832 * 19 17 15 22 22 H 1.48500 * 109.47158 * 329.99853 * 19 17 15 23 23 C 1.47421 * 125.64852 * 179.97438 * 10 8 7 24 24 C 1.38229 * 120.00031 * 0.25124 * 6 5 4 25 25 C 1.38231 * 120.00301 * 359.47423 * 24 6 5 26 26 H 1.08994 * 109.47227 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47321 * 300.00639 * 1 2 3 28 28 H 1.09008 * 109.46655 * 60.00313 * 1 2 3 29 29 H 1.08997 * 109.47421 * 239.99907 * 2 1 3 30 30 H 1.09008 * 109.47101 * 119.99980 * 2 1 3 31 31 H 1.07998 * 120.00211 * 359.97438 * 4 3 2 32 32 H 1.08001 * 120.00013 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47190 * 329.99636 * 7 6 5 34 34 H 1.09001 * 109.46692 * 210.00070 * 7 6 5 35 35 H 1.08996 * 109.88310 * 300.43775 * 11 10 8 36 36 H 1.09002 * 109.88672 * 61.44815 * 11 10 8 37 37 H 1.09000 * 110.72348 * 263.82382 * 12 11 10 38 38 H 1.09003 * 110.71705 * 140.55404 * 12 11 10 39 39 H 0.96708 * 113.99322 * 67.80350 * 14 13 12 40 40 H 0.96999 * 120.00046 * 179.97438 * 18 17 15 41 41 H 1.09002 * 110.36865 * 37.07626 * 23 10 8 42 42 H 1.09001 * 110.37117 * 274.74944 * 23 10 8 43 43 H 1.08002 * 119.99867 * 179.72791 * 24 6 5 44 44 H 1.07994 * 120.00790 * 180.27224 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7231 3.3759 1.1971 6 6 2.9526 4.0278 -0.0001 7 6 3.4540 5.4490 -0.0001 8 6 4.9609 5.4501 -0.0005 9 8 5.5682 4.4003 -0.0004 10 7 5.6340 6.6178 -0.0012 11 6 5.0268 7.9568 -0.0005 12 6 6.1794 8.9826 -0.0278 13 6 7.3598 8.1635 -0.6134 14 8 7.2943 8.1187 -2.0402 15 6 8.6832 8.7180 -0.1527 16 1 9.3053 8.1438 0.5178 17 6 9.0996 9.9584 -0.5873 18 7 8.3423 10.6574 -1.4042 19 14 10.7398 10.6461 -0.0157 20 1 11.8070 10.2316 -0.9614 21 1 10.6664 12.1287 0.0288 22 1 11.0497 10.1249 1.3398 23 6 7.1009 6.7640 -0.0011 24 6 2.7169 3.3781 -1.1971 25 6 2.2619 2.0728 -1.1972 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 2.0822 1.5636 2.1324 32 1 2.9027 3.8852 2.1324 33 1 3.0905 5.9625 0.8901 34 1 3.0899 5.9626 -0.8899 35 1 4.3999 8.0799 -0.8836 36 1 4.4283 8.0921 0.9004 37 1 6.4120 9.3283 0.9794 38 1 5.9329 9.8224 -0.6776 39 1 7.4499 8.9719 -2.4680 40 1 8.6352 11.5302 -1.7097 41 1 7.5593 5.9900 -0.6167 42 1 7.4868 6.7180 1.0173 43 1 2.8920 3.8889 -2.1324 44 1 2.0819 1.5636 -2.1324 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843376.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:41 Heat of formation + Delta-G solvation = -92.339340 kcal Electronic energy + Delta-G solvation = -24315.279722 eV Core-core repulsion = 20809.893486 eV Total energy + Delta-G solvation = -3505.386235 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 4.50 seconds Orbital eigenvalues (eV) -41.23983 -40.18956 -38.84890 -36.09053 -35.50488 -34.14300 -32.49202 -31.80073 -31.32708 -30.04120 -28.31585 -26.69738 -24.37714 -23.63180 -23.56733 -21.73241 -21.37301 -20.19131 -19.16572 -18.12092 -17.27587 -17.02116 -16.93425 -16.47439 -16.20209 -15.94302 -15.79598 -15.26291 -14.85206 -14.57626 -14.53552 -14.24688 -13.99635 -13.85182 -13.69883 -13.51678 -13.23197 -13.07349 -12.90882 -12.89580 -12.64311 -12.50815 -12.46468 -12.26032 -12.05354 -11.86641 -11.69764 -11.63786 -11.30766 -10.94615 -10.64091 -10.15325 -9.78462 -9.55799 -9.40656 -8.25964 -6.40300 0.40178 0.54074 1.41636 1.44960 1.53416 1.65267 2.09493 2.39680 2.87492 2.99223 3.65425 3.74881 3.88455 3.90230 3.97697 4.07220 4.15619 4.19091 4.37158 4.37838 4.48651 4.50649 4.57401 4.60894 4.61266 4.71680 4.76246 4.77492 4.89731 5.06756 5.10279 5.17505 5.18362 5.24346 5.29850 5.40536 5.44615 5.52926 5.53291 5.70351 5.74355 5.77111 6.05280 6.14917 6.61492 6.66978 7.18349 7.31001 7.45187 8.80367 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.043689 B = 0.002607 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.742362 B =10739.420588 C =10818.328764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C -0.091 4.091 4 C -0.126 4.126 5 C -0.116 4.116 6 C -0.084 4.084 7 C -0.086 4.086 8 C 0.519 3.481 9 O -0.590 6.590 10 N -0.612 5.612 11 C 0.106 3.894 12 C -0.131 4.131 13 C 0.233 3.767 14 O -0.596 6.596 15 C -0.561 4.561 16 H 0.055 0.945 17 C 0.035 3.965 18 N -0.909 5.909 19 Si 0.961 3.039 20 H -0.280 1.280 21 H -0.277 1.277 22 H -0.271 1.271 23 C 0.124 3.876 24 C -0.120 4.120 25 C -0.128 4.128 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.139 0.861 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.381 0.619 40 H 0.273 0.727 41 H 0.041 0.959 42 H 0.070 0.930 43 H 0.122 0.878 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.882 -11.247 3.882 20.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.144 4.144 5 C -0.134 4.134 6 C -0.085 4.085 7 C -0.126 4.126 8 C 0.310 3.690 9 O -0.471 6.471 10 N -0.345 5.345 11 C -0.016 4.016 12 C -0.169 4.169 13 C 0.193 3.807 14 O -0.406 6.406 15 C -0.599 4.599 16 H 0.074 0.926 17 C -0.166 4.166 18 N -0.549 5.549 19 Si 0.787 3.213 20 H -0.206 1.206 21 H -0.202 1.202 22 H -0.196 1.196 23 C 0.001 3.999 24 C -0.138 4.138 25 C -0.145 4.145 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.157 0.843 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.136 0.864 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.233 0.767 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.089 0.911 43 H 0.140 0.860 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.765 -12.310 3.907 21.163 hybrid contribution 1.541 1.298 -0.105 2.017 sum -15.225 -11.012 3.803 19.171 Atomic orbital electron populations 1.21719 0.93786 1.02447 1.01991 1.20584 0.96863 0.91191 1.03442 1.20211 0.98693 0.97297 0.92936 1.21234 1.00107 0.94557 0.98508 1.21202 0.98995 0.95604 0.97576 1.19468 0.99597 0.95293 0.94136 1.20662 0.88886 0.95869 1.07137 1.20943 0.91047 0.81549 0.75469 1.90656 1.71567 1.32168 1.52688 1.48713 1.07346 1.06760 1.71642 1.22229 0.96347 0.80571 1.02479 1.22992 0.95010 0.97570 1.01359 1.19785 0.92888 0.89267 0.78738 1.86089 1.94712 1.38484 1.21342 1.21709 1.05147 1.03082 1.30012 0.92647 1.25616 1.00291 0.96338 0.94321 1.69615 1.38343 1.13546 1.33400 0.85512 0.79629 0.77512 0.78679 1.20644 1.20177 1.19592 1.22122 0.80603 0.97788 0.99347 1.21190 0.99264 0.95721 0.97634 1.21210 1.00278 0.94469 0.98585 0.91035 0.92709 0.92891 0.90584 0.90368 0.84334 0.85309 0.85471 0.86405 0.90710 0.88830 0.91581 0.90949 0.76730 0.91769 0.94033 0.91142 0.86046 0.84680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.89 71.98 0.71 -1.08 16 2 C -0.08 -1.28 6.06 29.85 0.18 -1.10 16 3 C -0.09 -1.96 5.13 -19.87 -0.10 -2.06 16 4 C -0.13 -2.80 9.70 22.27 0.22 -2.59 16 5 C -0.12 -2.89 9.70 22.27 0.22 -2.68 16 6 C -0.08 -2.29 4.37 -19.87 -0.09 -2.38 16 7 C -0.09 -2.23 5.02 29.10 0.15 -2.09 16 8 C 0.52 19.24 7.84 87.66 0.69 19.93 16 9 O -0.59 -26.82 16.29 -3.02 -0.05 -26.87 16 10 N -0.61 -23.63 3.33 -811.76 -2.70 -26.33 16 11 C 0.11 3.46 6.49 86.73 0.56 4.02 16 12 C -0.13 -5.38 5.64 31.78 0.18 -5.20 16 13 C 0.23 11.34 0.89 -10.14 -0.01 11.33 16 14 O -0.60 -31.09 13.18 -148.98 -1.96 -33.06 16 15 C -0.56 -29.41 8.25 25.60 0.21 -29.20 16 16 H 0.06 2.92 7.77 -2.91 -0.02 2.90 16 17 C 0.04 1.79 5.30 84.65 0.45 2.24 16 18 N -0.91 -46.21 10.79 21.45 0.23 -45.97 16 19 Si 0.96 40.94 29.54 68.60 2.03 42.97 16 20 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 23 C 0.12 5.71 6.08 86.86 0.53 6.24 16 24 C -0.12 -3.17 9.70 22.27 0.22 -2.96 16 25 C -0.13 -2.97 9.70 22.27 0.22 -2.75 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 30 H 0.08 1.08 8.09 -2.38 -0.02 1.06 16 31 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 33 H 0.13 2.53 8.09 -2.39 -0.02 2.51 16 34 H 0.12 2.61 8.08 -2.39 -0.02 2.59 16 35 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.07 2.71 8.03 -2.39 -0.02 2.69 16 38 H 0.07 3.12 7.85 -2.39 -0.02 3.10 16 39 H 0.38 20.02 6.93 -74.05 -0.51 19.51 16 40 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 41 H 0.04 2.10 8.04 -2.39 -0.02 2.08 16 42 H 0.07 3.16 8.01 -2.39 -0.02 3.14 16 43 H 0.12 3.02 8.06 -2.91 -0.02 2.99 16 44 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -64.29 364.44 2.34 -61.96 By element: Atomic # 1 Polarization: 37.16 SS G_CDS: 0.47 Total: 37.63 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 4.32 Total: -10.32 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -2.47 Total: -72.30 kcal Atomic # 8 Polarization: -57.91 SS G_CDS: -2.01 Total: -59.92 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -64.29 2.34 -61.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843376.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.384 kcal (2) G-P(sol) polarization free energy of solvation -64.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.50 seconds