Wall clock time and date at job start Tue Mar 31 2020 08:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46803 * 2 1 4 4 C 1.37866 * 120.01671 * 264.99496 * 3 2 1 5 5 C 1.38717 * 120.69119 * 180.02562 * 4 3 2 6 6 C 1.37751 * 120.27504 * 359.97438 * 5 4 3 7 7 C 1.39385 * 119.60314 * 0.02562 * 6 5 4 8 8 C 1.46787 * 134.34907 * 180.02562 * 7 6 5 9 9 C 1.33990 * 106.18746 * 179.97438 * 8 7 6 10 10 C 1.50695 * 124.92141 * 180.02562 * 9 8 7 11 11 N 1.46501 * 109.46704 * 95.66025 * 10 9 8 12 12 C 1.36938 * 119.99729 * 88.42322 * 11 10 9 13 13 H 1.08000 * 120.00253 * 321.56160 * 12 11 10 14 14 C 1.38817 * 120.00216 * 141.55969 * 12 11 10 15 15 N 1.31616 * 119.99766 * 159.51921 * 14 12 11 16 16 Si 1.86801 * 119.99733 * 339.52451 * 14 12 11 17 17 H 1.48506 * 109.47013 * 95.37947 * 16 14 12 18 18 H 1.48501 * 109.46894 * 215.37996 * 16 14 12 19 19 H 1.48498 * 109.47306 * 335.38158 * 16 14 12 20 20 C 1.46501 * 120.00279 * 268.41550 * 11 10 9 21 21 C 1.53010 * 109.46541 * 90.00576 * 20 11 10 22 22 O 1.42894 * 109.47030 * 64.99851 * 21 20 11 23 23 C 1.42899 * 113.99524 * 179.97438 * 22 21 20 24 24 O 1.34447 * 110.15613 * 0.02562 * 9 8 7 25 25 C 1.34832 * 110.90089 * 359.77119 * 24 9 8 26 26 H 1.08995 * 109.47518 * 300.00009 * 1 2 3 27 27 H 1.09002 * 109.46716 * 60.00866 * 1 2 3 28 28 H 1.09004 * 109.46749 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46716 * 119.99134 * 2 1 3 30 30 H 1.08993 * 109.47187 * 239.99299 * 2 1 3 31 31 H 1.08006 * 119.64897 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.86168 * 179.97438 * 5 4 3 33 33 H 1.08008 * 120.20240 * 179.97438 * 6 5 4 34 34 H 1.08004 * 126.90600 * 0.02562 * 8 7 6 35 35 H 1.09003 * 109.47388 * 215.66120 * 10 9 8 36 36 H 1.09003 * 109.47272 * 335.66547 * 10 9 8 37 37 H 0.97000 * 119.99404 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.47121 * 209.99871 * 20 11 10 39 39 H 1.08997 * 109.47012 * 330.00916 * 20 11 10 40 40 H 1.09003 * 109.46374 * 185.00253 * 21 20 11 41 41 H 1.08998 * 109.46661 * 304.99596 * 21 20 11 42 42 H 1.08998 * 109.47909 * 299.99993 * 23 22 21 43 43 H 1.09007 * 109.47382 * 60.00326 * 23 22 21 44 44 H 1.09006 * 109.47312 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3603 2.0364 -1.1892 5 6 2.8245 3.3435 -1.2054 6 6 2.9634 4.0458 -0.0285 7 6 2.6352 3.4350 1.1806 8 6 2.6553 3.8623 2.5847 9 6 2.2189 2.8165 3.2998 10 6 2.0719 2.7980 4.7994 11 7 0.6884 3.1195 5.1584 12 6 -0.2440 2.1211 5.2530 13 1 -0.2311 1.3016 4.5496 14 6 -1.2060 2.1623 6.2529 15 7 -2.3172 1.4684 6.1260 16 14 -0.9234 3.2025 7.7785 17 1 -1.5718 4.5268 7.6016 18 1 -1.5089 2.5185 8.9594 19 1 0.5349 3.3893 7.9871 20 6 0.3026 4.5090 5.4164 21 6 -0.1546 5.1621 4.1104 22 8 -1.3438 4.5192 3.6472 23 6 -1.8574 5.0568 2.4268 24 8 1.9312 1.7862 2.4854 25 6 2.1616 2.1122 1.1975 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 2.2556 1.4949 -2.1178 32 1 3.0779 3.8125 -2.1446 33 1 3.3253 5.0633 -0.0425 34 1 2.9598 4.8263 2.9650 35 1 2.3244 1.8071 5.1770 36 1 2.7424 3.5362 5.2394 37 1 -2.9892 1.4969 6.8249 38 1 -0.5133 4.5314 6.1388 39 1 1.1570 5.0551 5.8160 40 1 -0.3569 6.2190 4.2842 41 1 0.6292 5.0609 3.3597 42 1 -2.0952 6.1114 2.5659 43 1 -1.1090 4.9538 1.6409 44 1 -2.7599 4.5156 2.1428 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597145957.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:13 Heat of formation + Delta-G solvation = 6.666045 kcal Electronic energy + Delta-G solvation = -25853.949305 eV Core-core repulsion = 22352.856265 eV Total energy + Delta-G solvation = -3501.093040 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.98656 -37.96357 -37.34806 -35.58876 -34.22691 -32.04253 -31.34852 -30.26557 -28.95477 -28.57877 -25.97576 -25.65270 -23.74435 -22.92274 -22.21907 -21.44541 -20.27358 -20.10832 -17.08176 -16.75997 -16.21152 -16.07924 -15.59740 -15.35370 -15.17245 -14.72223 -14.24628 -14.18998 -14.01124 -13.60505 -13.16582 -12.97240 -12.89992 -12.66961 -12.51951 -12.13577 -11.88214 -11.87176 -11.56184 -11.53596 -11.48094 -11.28157 -10.85734 -10.75715 -10.67432 -10.49406 -10.33732 -9.78427 -9.63351 -9.53448 -8.83533 -8.51888 -8.20617 -7.67806 -6.94269 -5.90577 -3.37634 1.20351 1.64250 2.80044 3.23381 3.34039 3.47370 3.50137 3.93337 4.55377 4.59353 4.74516 4.87578 4.94919 4.97217 5.27131 5.30569 5.43048 5.51899 5.54549 5.58601 5.69366 5.73273 5.74404 5.83250 5.84153 5.99077 6.00654 6.00994 6.04809 6.10078 6.12608 6.15621 6.21556 6.26818 6.38532 6.48165 6.54679 6.59948 6.67758 6.69766 6.84839 7.00424 7.70261 7.95630 8.11080 8.42959 8.96197 9.74621 10.04339 11.24612 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.005193 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.558022 B = 5390.293992 C = 5712.528076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.065 4.065 4 C -0.111 4.111 5 C -0.139 4.139 6 C -0.088 4.088 7 C -0.117 4.117 8 C -0.245 4.245 9 C 0.069 3.931 10 C 0.204 3.796 11 N -0.582 5.582 12 C -0.260 4.260 13 H 0.079 0.921 14 C 0.048 3.952 15 N -0.893 5.893 16 Si 0.877 3.123 17 H -0.286 1.286 18 H -0.302 1.302 19 H -0.270 1.270 20 C 0.130 3.870 21 C 0.040 3.960 22 O -0.346 6.346 23 C 0.033 3.967 24 O -0.177 6.177 25 C 0.051 3.949 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.147 0.853 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.262 0.738 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.026 0.974 41 H 0.045 0.955 42 H 0.025 0.975 43 H 0.028 0.972 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.798 4.909 -11.453 15.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.065 4.065 4 C -0.129 4.129 5 C -0.157 4.157 6 C -0.106 4.106 7 C -0.118 4.118 8 C -0.266 4.266 9 C 0.017 3.983 10 C 0.076 3.924 11 N -0.301 5.301 12 C -0.389 4.389 13 H 0.096 0.904 14 C -0.153 4.153 15 N -0.534 5.534 16 Si 0.707 3.293 17 H -0.214 1.214 18 H -0.230 1.230 19 H -0.195 1.195 20 C 0.004 3.996 21 C -0.039 4.039 22 O -0.264 6.264 23 C -0.064 4.064 24 O -0.076 6.076 25 C 0.003 3.997 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.165 0.835 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.044 0.956 41 H 0.064 0.936 42 H 0.044 0.956 43 H 0.047 0.953 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.411 4.399 -11.136 15.229 hybrid contribution 0.020 1.258 0.384 1.315 sum 9.431 5.657 -10.752 15.380 Atomic orbital electron populations 1.21737 0.94318 1.01807 1.02567 1.20482 0.96660 0.92065 1.02648 1.18775 1.02300 0.96622 0.88805 1.20662 1.00955 0.95213 0.96104 1.20849 1.02476 0.94810 0.97558 1.20404 1.00321 0.99389 0.90520 1.19968 1.03167 0.94417 0.94262 1.22039 1.13404 1.00632 0.90483 1.24546 0.93172 0.84950 0.95629 1.19691 0.87965 1.01964 0.82776 1.44066 1.04365 1.02297 1.79415 1.18605 1.06988 1.02973 1.10296 0.90388 1.25305 0.95816 0.96688 0.97453 1.69861 1.06360 1.43616 1.33529 0.86948 0.78456 0.79476 0.84381 1.21422 1.22998 1.19468 1.21468 0.98168 0.85565 0.94364 1.23307 0.87927 0.94066 0.98583 1.88275 1.41427 1.58381 1.38301 1.22616 0.98697 0.97138 0.87952 1.84121 1.70412 1.39096 1.14003 1.19501 1.01425 0.94263 0.84491 0.91749 0.92914 0.92377 0.90835 0.91180 0.85543 0.86024 0.86268 0.83479 0.90122 0.90218 0.92844 0.91652 0.92427 0.95551 0.93650 0.95609 0.95316 0.90405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.89 37.16 0.37 -1.74 16 2 C -0.08 -1.12 6.07 -27.88 -0.17 -1.29 16 3 C -0.06 -1.00 5.14 -104.52 -0.54 -1.54 16 4 C -0.11 -1.45 9.64 -39.54 -0.38 -1.84 16 5 C -0.14 -1.75 10.03 -39.58 -0.40 -2.14 16 6 C -0.09 -1.25 10.10 -39.33 -0.40 -1.65 16 7 C -0.12 -2.00 6.40 -105.16 -0.67 -2.68 16 8 C -0.25 -4.17 9.31 -37.62 -0.35 -4.52 16 9 C 0.07 1.31 6.55 -35.80 -0.23 1.08 16 10 C 0.20 3.86 6.22 -5.20 -0.03 3.83 16 11 N -0.58 -13.35 2.04 -174.60 -0.36 -13.70 16 12 C -0.26 -7.21 9.43 -15.06 -0.14 -7.35 16 13 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 14 C 0.05 1.39 5.33 -17.43 -0.09 1.29 16 15 N -0.89 -27.44 13.97 55.49 0.78 -26.66 16 16 Si 0.88 21.86 24.95 -169.99 -4.24 17.62 16 17 H -0.29 -7.04 6.70 56.52 0.38 -6.66 16 18 H -0.30 -7.68 7.11 56.52 0.40 -7.27 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 C 0.13 2.74 4.96 -4.04 -0.02 2.72 16 21 C 0.04 0.80 6.28 37.16 0.23 1.04 16 22 O -0.35 -8.03 10.18 -35.23 -0.36 -8.38 16 23 C 0.03 0.61 11.01 101.05 1.11 1.72 16 24 O -0.18 -3.64 10.58 3.85 0.04 -3.60 16 25 C 0.05 0.94 7.10 -38.49 -0.27 0.67 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.08 8.12 -51.93 -0.42 0.66 16 30 H 0.07 0.78 8.05 -51.93 -0.42 0.36 16 31 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 32 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 34 H 0.15 2.13 8.06 -52.48 -0.42 1.71 16 35 H 0.08 1.53 8.05 -51.93 -0.42 1.11 16 36 H 0.08 1.23 7.86 -51.93 -0.41 0.82 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.07 1.54 3.24 -51.93 -0.17 1.38 16 39 H 0.06 1.00 7.88 -51.93 -0.41 0.59 16 40 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.05 0.87 6.03 -51.93 -0.31 0.56 16 42 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 360.90 15.07 5.44 5.44 Total: -1.00 -32.74 360.90 -7.47 -40.22 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.79 Total: 1.48 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -1.99 Total: -12.40 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.42 Total: -40.36 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -0.32 Total: -11.99 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.24 Total: 17.62 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.74 -7.47 -40.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597145957.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.885 kcal (2) G-P(sol) polarization free energy of solvation -32.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds