Wall clock time and date at job start Tue Mar 31 2020 08:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46803 * 2 1 4 4 C 1.37866 * 120.01671 * 264.99496 * 3 2 1 5 5 C 1.38717 * 120.69119 * 180.02562 * 4 3 2 6 6 C 1.37751 * 120.27504 * 359.97438 * 5 4 3 7 7 C 1.39385 * 119.60314 * 0.02562 * 6 5 4 8 8 C 1.46787 * 134.34907 * 180.02562 * 7 6 5 9 9 C 1.33990 * 106.18746 * 179.97438 * 8 7 6 10 10 C 1.50695 * 124.92141 * 180.02562 * 9 8 7 11 11 N 1.46501 * 109.46704 * 95.66025 * 10 9 8 12 12 C 1.36938 * 119.99729 * 88.42322 * 11 10 9 13 13 H 1.08000 * 120.00253 * 321.56160 * 12 11 10 14 14 C 1.38817 * 120.00216 * 141.55969 * 12 11 10 15 15 N 1.31616 * 119.99766 * 159.51921 * 14 12 11 16 16 Si 1.86801 * 119.99733 * 339.52451 * 14 12 11 17 17 H 1.48506 * 109.47013 * 95.37947 * 16 14 12 18 18 H 1.48501 * 109.46894 * 215.37996 * 16 14 12 19 19 H 1.48498 * 109.47306 * 335.38158 * 16 14 12 20 20 C 1.46501 * 120.00279 * 268.41550 * 11 10 9 21 21 C 1.53010 * 109.46541 * 90.00576 * 20 11 10 22 22 O 1.42894 * 109.47030 * 64.99851 * 21 20 11 23 23 C 1.42899 * 113.99524 * 179.97438 * 22 21 20 24 24 O 1.34447 * 110.15613 * 0.02562 * 9 8 7 25 25 C 1.34832 * 110.90089 * 359.77119 * 24 9 8 26 26 H 1.08995 * 109.47518 * 300.00009 * 1 2 3 27 27 H 1.09002 * 109.46716 * 60.00866 * 1 2 3 28 28 H 1.09004 * 109.46749 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46716 * 119.99134 * 2 1 3 30 30 H 1.08993 * 109.47187 * 239.99299 * 2 1 3 31 31 H 1.08006 * 119.64897 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.86168 * 179.97438 * 5 4 3 33 33 H 1.08008 * 120.20240 * 179.97438 * 6 5 4 34 34 H 1.08004 * 126.90600 * 0.02562 * 8 7 6 35 35 H 1.09003 * 109.47388 * 215.66120 * 10 9 8 36 36 H 1.09003 * 109.47272 * 335.66547 * 10 9 8 37 37 H 0.97000 * 119.99404 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.47121 * 209.99871 * 20 11 10 39 39 H 1.08997 * 109.47012 * 330.00916 * 20 11 10 40 40 H 1.09003 * 109.46374 * 185.00253 * 21 20 11 41 41 H 1.08998 * 109.46661 * 304.99596 * 21 20 11 42 42 H 1.08998 * 109.47909 * 299.99993 * 23 22 21 43 43 H 1.09007 * 109.47382 * 60.00326 * 23 22 21 44 44 H 1.09006 * 109.47312 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3603 2.0364 -1.1892 5 6 2.8245 3.3435 -1.2054 6 6 2.9634 4.0458 -0.0285 7 6 2.6352 3.4350 1.1806 8 6 2.6553 3.8623 2.5847 9 6 2.2189 2.8165 3.2998 10 6 2.0719 2.7980 4.7994 11 7 0.6884 3.1195 5.1584 12 6 -0.2440 2.1211 5.2530 13 1 -0.2311 1.3016 4.5496 14 6 -1.2060 2.1623 6.2529 15 7 -2.3172 1.4684 6.1260 16 14 -0.9234 3.2025 7.7785 17 1 -1.5718 4.5268 7.6016 18 1 -1.5089 2.5185 8.9594 19 1 0.5349 3.3893 7.9871 20 6 0.3026 4.5090 5.4164 21 6 -0.1546 5.1621 4.1104 22 8 -1.3438 4.5192 3.6472 23 6 -1.8574 5.0568 2.4268 24 8 1.9312 1.7862 2.4854 25 6 2.1616 2.1122 1.1975 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 2.2556 1.4949 -2.1178 32 1 3.0779 3.8125 -2.1446 33 1 3.3253 5.0633 -0.0425 34 1 2.9598 4.8263 2.9650 35 1 2.3244 1.8071 5.1770 36 1 2.7424 3.5362 5.2394 37 1 -2.9892 1.4969 6.8249 38 1 -0.5133 4.5314 6.1388 39 1 1.1570 5.0551 5.8160 40 1 -0.3569 6.2190 4.2842 41 1 0.6292 5.0609 3.3597 42 1 -2.0952 6.1114 2.5659 43 1 -1.1090 4.9538 1.6409 44 1 -2.7599 4.5156 2.1428 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597145957.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:12 Heat of formation + Delta-G solvation = -13.555412 kcal Electronic energy + Delta-G solvation = -25854.826173 eV Core-core repulsion = 22352.856265 eV Total energy + Delta-G solvation = -3501.969908 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.28475 -39.24114 -38.86448 -37.29761 -35.39178 -33.94171 -32.84250 -31.65916 -30.24717 -29.99450 -27.54516 -27.23256 -25.05209 -24.54614 -23.40579 -23.02812 -21.75290 -21.31407 -18.77686 -18.27594 -17.76631 -17.53537 -17.00807 -16.92907 -16.43271 -16.30890 -15.87500 -15.53881 -15.25237 -15.14046 -14.76179 -14.46764 -14.20927 -14.05814 -13.84959 -13.76244 -13.33303 -13.09794 -13.00546 -12.96180 -12.76618 -12.68193 -12.43449 -12.35372 -12.13090 -11.90825 -11.73518 -11.58814 -11.45046 -10.88131 -10.60688 -10.35046 -9.41925 -9.00781 -8.74295 -8.09712 -5.54129 0.03813 0.49043 1.35149 1.44008 1.49185 1.56247 2.00299 2.49114 2.80223 3.08353 3.10377 3.47361 3.57310 3.72310 3.93148 4.11782 4.26094 4.26596 4.32940 4.35908 4.40499 4.42256 4.47590 4.48420 4.54727 4.56527 4.58591 4.64185 4.65731 4.76821 4.83029 4.84404 4.94005 4.99211 5.05162 5.10864 5.24875 5.39411 5.51327 5.56234 5.63831 5.89906 5.99363 6.23212 6.41964 6.52627 6.99208 7.64512 7.99981 9.10423 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.005193 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.558022 B = 5390.293992 C = 5712.528076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.078 4.078 3 C -0.090 4.090 4 C -0.100 4.100 5 C -0.131 4.131 6 C -0.090 4.090 7 C -0.142 4.142 8 C -0.223 4.223 9 C 0.031 3.969 10 C 0.204 3.796 11 N -0.593 5.593 12 C -0.238 4.238 13 H 0.018 0.982 14 C -0.015 4.015 15 N -0.952 5.952 16 Si 0.951 3.049 17 H -0.278 1.278 18 H -0.313 1.313 19 H -0.241 1.241 20 C 0.121 3.879 21 C 0.040 3.960 22 O -0.399 6.399 23 C 0.034 3.966 24 O -0.217 6.217 25 C 0.015 3.985 26 H 0.014 0.986 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.107 0.893 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.148 0.852 34 H 0.177 0.823 35 H 0.065 0.935 36 H 0.126 0.874 37 H 0.259 0.741 38 H 0.040 0.960 39 H 0.106 0.894 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.031 0.969 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.257 8.075 -13.404 19.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 C -0.090 4.090 4 C -0.117 4.117 5 C -0.149 4.149 6 C -0.108 4.108 7 C -0.143 4.143 8 C -0.243 4.243 9 C -0.019 4.019 10 C 0.078 3.922 11 N -0.314 5.314 12 C -0.368 4.368 13 H 0.036 0.964 14 C -0.211 4.211 15 N -0.596 5.596 16 Si 0.780 3.220 17 H -0.206 1.206 18 H -0.242 1.242 19 H -0.165 1.165 20 C -0.003 4.003 21 C -0.038 4.038 22 O -0.317 6.317 23 C -0.063 4.063 24 O -0.119 6.119 25 C -0.032 4.032 26 H 0.034 0.966 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.125 0.875 31 H 0.181 0.819 32 H 0.181 0.819 33 H 0.165 0.835 34 H 0.194 0.806 35 H 0.083 0.917 36 H 0.143 0.857 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.124 0.876 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.050 0.950 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.932 7.602 -13.107 19.286 hybrid contribution -0.677 0.247 0.690 0.997 sum 11.255 7.849 -12.418 18.506 Atomic orbital electron populations 1.21685 0.95134 1.02203 1.00851 1.20485 0.95853 0.91901 1.03302 1.19185 1.03413 0.97419 0.89013 1.21172 0.98612 0.95699 0.96249 1.21378 1.00454 0.94367 0.98697 1.20831 0.99426 1.00709 0.89800 1.20301 1.04419 0.94197 0.95416 1.22367 1.10871 1.00655 0.90407 1.24383 0.96152 0.85806 0.95593 1.19880 0.86461 1.02648 0.83201 1.44069 1.05099 1.02242 1.79985 1.18242 1.07727 1.02610 1.08239 0.96399 1.26007 0.95314 0.98995 1.00756 1.70037 1.07830 1.47130 1.34618 0.85753 0.79746 0.77512 0.79030 1.20593 1.24247 1.16466 1.21673 0.99219 0.84783 0.94657 1.23366 0.87123 0.95331 0.97996 1.88204 1.42942 1.60413 1.40182 1.22707 0.98431 0.98667 0.86509 1.84038 1.71650 1.40579 1.15621 1.20115 1.02959 0.95908 0.84264 0.96650 0.91205 0.90982 0.93065 0.87494 0.81948 0.81910 0.83467 0.80570 0.91650 0.85671 0.93244 0.94163 0.87644 0.92300 0.93013 0.92513 0.95044 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.23 9.89 71.98 0.71 -3.52 16 2 C -0.08 -2.19 6.07 29.85 0.18 -2.01 16 3 C -0.09 -2.75 5.14 -19.80 -0.10 -2.86 16 4 C -0.10 -2.27 9.64 22.30 0.22 -2.06 16 5 C -0.13 -2.73 10.03 22.27 0.22 -2.50 16 6 C -0.09 -2.24 10.10 22.43 0.23 -2.01 16 7 C -0.14 -4.69 6.40 -20.21 -0.13 -4.82 16 8 C -0.22 -7.26 9.31 23.54 0.22 -7.04 16 9 C 0.03 1.21 6.55 24.72 0.16 1.37 16 10 C 0.20 7.74 6.22 85.63 0.53 8.28 16 11 N -0.59 -27.41 2.04 -706.31 -1.44 -28.85 16 12 C -0.24 -13.97 9.43 84.03 0.79 -13.18 16 13 H 0.02 1.25 8.06 -2.91 -0.02 1.22 16 14 C -0.02 -0.90 5.33 84.86 0.45 -0.45 16 15 N -0.95 -62.22 13.97 21.65 0.30 -61.92 16 16 Si 0.95 46.29 24.95 68.60 1.71 48.00 16 17 H -0.28 -13.07 6.70 99.48 0.67 -12.40 16 18 H -0.31 -15.64 7.11 99.48 0.71 -14.93 16 19 H -0.24 -10.49 7.11 99.48 0.71 -9.78 16 20 C 0.12 4.86 4.96 86.38 0.43 5.29 16 21 C 0.04 1.52 6.28 71.99 0.45 1.98 16 22 O -0.40 -18.62 10.18 -148.98 -1.52 -20.13 16 23 C 0.03 1.21 11.01 113.37 1.25 2.46 16 24 O -0.22 -9.62 10.58 -9.15 -0.10 -9.71 16 25 C 0.01 0.55 7.10 22.98 0.16 0.72 16 26 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.05 1.62 8.12 -2.39 -0.02 1.61 16 30 H 0.11 2.15 8.05 -2.39 -0.02 2.13 16 31 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 32 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 33 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 34 H 0.18 4.46 8.06 -2.91 -0.02 4.44 16 35 H 0.07 2.60 8.05 -2.39 -0.02 2.58 16 36 H 0.13 3.50 7.86 -2.39 -0.02 3.48 16 37 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 38 H 0.04 1.83 3.24 -2.39 -0.01 1.83 16 39 H 0.11 3.18 7.88 -2.39 -0.02 3.16 16 40 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.05 1.87 6.03 -2.39 -0.01 1.85 16 42 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 Total: -1.00 -79.63 360.90 5.68 -73.95 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.94 Total: 19.02 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: 5.78 Total: -20.36 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -1.14 Total: -90.76 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -1.61 Total: -29.85 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.71 Total: 48.00 kcal Total: -79.63 5.68 -73.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597145957.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.394 kcal (2) G-P(sol) polarization free energy of solvation -79.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds