Wall clock time and date at job start Tue Mar 31 2020 08:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 110.34202 * 2 1 4 4 C 1.54450 * 110.37929 * 237.60621 * 2 1 3 5 5 O 1.44682 * 103.57159 * 263.80014 * 4 2 1 6 6 C 1.44607 * 103.84704 * 321.80024 * 5 4 2 7 7 N 1.47597 * 105.59079 * 40.01801 * 6 5 4 8 8 C 1.34774 * 127.01919 * 155.25871 * 7 6 5 9 9 O 1.21280 * 120.00340 * 179.68150 * 8 7 6 10 10 C 1.50701 * 119.99919 * 359.68528 * 8 7 6 11 11 C 1.52998 * 109.47182 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.46854 * 53.97714 * 11 10 8 13 13 C 1.50697 * 109.47226 * 293.97450 * 11 10 8 14 14 H 1.07996 * 119.99857 * 327.00727 * 13 11 10 15 15 C 1.37882 * 120.00132 * 147.00582 * 13 11 10 16 16 N 1.31504 * 119.99922 * 173.49766 * 15 13 11 17 17 Si 1.86801 * 119.99976 * 353.76833 * 15 13 11 18 18 H 1.48500 * 109.47267 * 274.90899 * 17 15 13 19 19 H 1.48506 * 109.46933 * 34.90530 * 17 15 13 20 20 H 1.48495 * 109.47054 * 154.90253 * 17 15 13 21 21 C 1.50697 * 109.47272 * 173.97321 * 11 10 8 22 22 C 1.38236 * 120.00036 * 65.21665 * 21 11 10 23 23 C 1.38235 * 119.99860 * 179.78660 * 22 21 11 24 24 C 1.38229 * 120.00439 * 0.44566 * 23 22 21 25 25 C 1.38235 * 119.99780 * 359.81010 * 24 23 22 26 26 C 1.38237 * 120.00072 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.46711 * 297.72155 * 1 2 3 28 28 H 1.08996 * 109.47277 * 57.71615 * 1 2 3 29 29 H 1.08998 * 109.47276 * 177.72224 * 1 2 3 30 30 H 1.08995 * 109.47003 * 182.27747 * 3 2 1 31 31 H 1.08995 * 109.47354 * 302.28270 * 3 2 1 32 32 H 1.09003 * 109.46640 * 62.27990 * 3 2 1 33 33 H 1.08998 * 110.60218 * 22.32723 * 4 2 1 34 34 H 1.09003 * 110.60099 * 145.12461 * 4 2 1 35 35 H 1.08999 * 110.34075 * 280.95066 * 6 5 4 36 36 H 1.08997 * 110.17541 * 158.99152 * 6 5 4 37 37 H 1.08995 * 109.47528 * 59.99731 * 10 8 7 38 38 H 1.08998 * 109.47166 * 299.99581 * 10 8 7 39 39 H 0.97010 * 120.00341 * 180.27303 * 16 15 13 40 40 H 1.08002 * 119.99823 * 359.97438 * 22 21 11 41 41 H 1.08001 * 119.99956 * 180.27755 * 23 22 21 42 42 H 1.08004 * 120.00238 * 179.83307 * 24 23 22 43 43 H 1.08001 * 120.00387 * 180.02562 * 25 24 23 44 44 H 1.08004 * 120.00065 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0618 1.4346 0.0000 4 6 2.0678 -0.7757 -1.2225 5 8 2.3284 -2.0984 -0.6975 6 6 2.8526 -1.8481 0.6267 7 7 2.0443 -0.7392 1.1703 8 6 1.8252 -0.4558 2.4695 9 8 1.1396 0.4969 2.7752 10 6 2.4320 -1.3225 3.5426 11 6 2.0318 -0.7862 4.9185 12 1 0.9466 -0.6987 4.9726 13 6 2.6563 0.5688 5.1305 14 1 3.6228 0.7908 4.7029 15 6 1.9937 1.5251 5.8705 16 7 2.5905 2.6596 6.1638 17 14 0.2511 1.2060 6.4629 18 1 -0.7107 1.5747 5.3932 19 1 0.0963 -0.2336 6.7930 20 1 -0.0176 2.0230 7.6734 21 6 2.5132 -1.7339 5.9866 22 6 3.8684 -1.9218 6.1842 23 6 4.3100 -2.7878 7.1670 24 6 3.3965 -3.4730 7.9460 25 6 2.0413 -3.2891 7.7449 26 6 1.5996 -2.4197 6.7651 27 1 -0.3633 0.4781 0.9098 28 1 -0.3633 0.5489 -0.8688 29 1 -0.3634 -1.0268 -0.0408 30 1 3.1509 1.4183 -0.0408 31 1 1.6735 1.9661 -0.8688 32 1 1.7399 1.9414 0.9098 33 1 1.3167 -0.8171 -2.0113 34 1 2.9860 -0.3195 -1.5925 35 1 3.9015 -1.5569 0.5702 36 1 2.7407 -2.7358 1.2493 37 1 3.5179 -1.3091 3.4497 38 1 2.0705 -2.3448 3.4316 39 1 2.1258 3.3309 6.6878 40 1 4.5821 -1.3897 5.5728 41 1 5.3688 -2.9313 7.3244 42 1 3.7416 -4.1516 8.7121 43 1 1.3275 -3.8240 8.3538 44 1 0.5408 -2.2764 6.6077 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597621362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:15 Heat of formation + Delta-G solvation = -45.927542 kcal Electronic energy + Delta-G solvation = -25673.158085 eV Core-core repulsion = 22169.784417 eV Total energy + Delta-G solvation = -3503.373669 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.50490 -38.76715 -37.80305 -34.69740 -33.94511 -32.54519 -31.59530 -30.20842 -28.89919 -27.25339 -26.40693 -26.08258 -24.91132 -22.77905 -21.90933 -21.15307 -19.40256 -18.46395 -16.99972 -16.75564 -16.58746 -15.95704 -15.44250 -14.97087 -14.64135 -14.43561 -14.30525 -13.97477 -13.85570 -13.37216 -13.16917 -13.01473 -12.76725 -12.61347 -12.47329 -12.31183 -11.95851 -11.94028 -11.79044 -11.52884 -11.22040 -11.05571 -10.84966 -10.77705 -10.54418 -10.37256 -10.08426 -9.89748 -9.63614 -9.23850 -8.97448 -8.48295 -8.39097 -8.20536 -7.83172 -6.00575 -3.97579 2.09476 2.13932 3.13894 3.30475 3.42692 3.46590 3.51341 3.81458 4.51153 4.54230 4.57101 4.74502 4.89426 5.14832 5.20388 5.30498 5.38850 5.45155 5.51239 5.51612 5.55647 5.63984 5.68512 5.72040 5.87708 5.91360 5.94378 5.96746 6.06106 6.11168 6.23609 6.31053 6.34693 6.49669 6.54203 6.67623 6.78634 6.85979 6.99361 7.14103 7.26135 7.55834 7.70905 7.81117 7.87703 8.50297 8.84390 8.98412 9.64491 11.12142 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014169 B = 0.005444 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.731250 B = 5142.383902 C = 6297.043105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.130 3.870 3 C -0.154 4.154 4 C 0.046 3.954 5 O -0.372 6.372 6 C 0.264 3.736 7 N -0.646 5.646 8 C 0.542 3.458 9 O -0.488 6.488 10 C -0.114 4.114 11 C 0.057 3.943 12 H 0.049 0.951 13 C -0.489 4.489 14 H 0.071 0.929 15 C 0.086 3.914 16 N -0.898 5.898 17 Si 0.871 3.129 18 H -0.273 1.273 19 H -0.260 1.260 20 H -0.296 1.296 21 C -0.040 4.040 22 C -0.100 4.100 23 C -0.127 4.127 24 C -0.149 4.149 25 C -0.127 4.127 26 C -0.135 4.135 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.262 0.738 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.269 -10.338 -10.585 14.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.045 3.955 3 C -0.212 4.212 4 C -0.031 4.031 5 O -0.288 6.288 6 C 0.103 3.897 7 N -0.392 5.392 8 C 0.332 3.668 9 O -0.359 6.359 10 C -0.154 4.154 11 C 0.038 3.962 12 H 0.067 0.933 13 C -0.526 4.526 14 H 0.089 0.911 15 C -0.117 4.117 16 N -0.535 5.535 17 Si 0.699 3.301 18 H -0.199 1.199 19 H -0.184 1.184 20 H -0.223 1.223 21 C -0.040 4.040 22 C -0.118 4.118 23 C -0.146 4.146 24 C -0.167 4.167 25 C -0.145 4.145 26 C -0.153 4.153 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.137 0.863 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.190 -9.817 -10.309 14.236 hybrid contribution -0.753 0.204 0.527 0.941 sum -0.943 -9.612 -9.782 13.747 Atomic orbital electron populations 1.22059 0.93531 1.02183 1.03275 1.21676 0.95306 0.93147 0.85392 1.22071 1.00910 0.94652 1.03614 1.23879 1.00787 0.82598 0.95854 1.89374 1.84775 1.25981 1.28669 1.23299 0.93056 0.91100 0.82255 1.49670 1.53180 1.30735 1.05597 1.20464 0.80562 0.85725 0.80081 1.90730 1.37033 1.27953 1.80176 1.21716 1.01427 0.97124 0.95139 1.18111 0.97548 0.93976 0.86596 0.93286 1.20565 1.05467 0.93566 1.32967 0.91117 1.24875 0.97339 0.94738 0.94706 1.69891 1.37320 1.07614 1.38707 0.86957 0.86470 0.78818 0.77850 1.19884 1.18434 1.22269 1.20720 0.93159 0.92526 0.97635 1.20962 0.95820 0.97038 0.97972 1.21051 0.98699 0.97997 0.96809 1.20864 0.93434 1.01660 1.00720 1.20963 0.95478 0.99434 0.98606 1.21145 0.99321 0.97513 0.97357 0.90530 0.92000 0.92430 0.92454 0.91959 0.90067 0.88011 0.91061 0.91499 0.88207 0.89665 0.91236 0.92833 0.86255 0.87184 0.87427 0.87391 0.87084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.53 37.16 0.32 -1.75 16 2 C 0.13 1.77 0.95 -130.42 -0.12 1.64 16 3 C -0.15 -2.14 8.58 37.16 0.32 -1.82 16 4 C 0.05 0.49 6.85 37.92 0.26 0.75 16 5 O -0.37 -4.66 11.80 -35.23 -0.42 -5.07 16 6 C 0.26 3.27 7.60 60.45 0.46 3.73 16 7 N -0.65 -10.05 2.89 -160.90 -0.47 -10.52 16 8 C 0.54 10.53 7.29 -10.99 -0.08 10.45 16 9 O -0.49 -11.58 13.07 5.56 0.07 -11.50 16 10 C -0.11 -2.10 4.04 -27.88 -0.11 -2.21 16 11 C 0.06 1.28 1.23 -92.93 -0.11 1.17 16 12 H 0.05 1.18 4.87 -51.93 -0.25 0.93 16 13 C -0.49 -13.19 6.92 -34.44 -0.24 -13.43 16 14 H 0.07 2.06 8.06 -52.49 -0.42 1.64 16 15 C 0.09 2.50 5.47 -17.82 -0.10 2.40 16 16 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 17 Si 0.87 22.58 27.02 -169.99 -4.59 17.99 16 18 H -0.27 -7.25 7.11 56.52 0.40 -6.84 16 19 H -0.26 -6.25 5.14 56.52 0.29 -5.96 16 20 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 21 C -0.04 -0.83 4.77 -104.62 -0.50 -1.32 16 22 C -0.10 -1.93 8.89 -39.58 -0.35 -2.28 16 23 C -0.13 -2.16 10.05 -39.59 -0.40 -2.56 16 24 C -0.15 -2.41 10.05 -39.59 -0.40 -2.80 16 25 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 26 C -0.14 -2.64 8.97 -39.58 -0.35 -2.99 16 27 H 0.08 1.28 6.94 -51.93 -0.36 0.92 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.44 7.06 -51.93 -0.37 1.08 16 33 H 0.10 0.89 7.86 -51.93 -0.41 0.49 16 34 H 0.07 0.66 7.84 -51.93 -0.41 0.26 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.10 1.10 7.60 -51.93 -0.39 0.71 16 37 H 0.09 1.46 7.93 -51.93 -0.41 1.05 16 38 H 0.07 1.09 7.94 -51.93 -0.41 0.68 16 39 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 40 H 0.12 2.28 7.83 -52.49 -0.41 1.87 16 41 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 43 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.11 2.13 7.09 -52.48 -0.37 1.76 16 LS Contribution 352.49 15.07 5.31 5.31 Total: -1.00 -32.96 352.49 -7.97 -40.94 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.85 Total: 3.44 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -1.81 Total: -13.59 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.31 Total: -37.52 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.34 Total: -16.58 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.59 Total: 17.99 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.96 -7.97 -40.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597621362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.989 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds