Wall clock time and date at job start Tue Mar 31 2020 08:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 110.34202 * 2 1 4 4 C 1.54450 * 110.37929 * 237.60621 * 2 1 3 5 5 O 1.44682 * 103.57159 * 263.80014 * 4 2 1 6 6 C 1.44607 * 103.84704 * 321.80024 * 5 4 2 7 7 N 1.47597 * 105.59079 * 40.01801 * 6 5 4 8 8 C 1.34774 * 127.01919 * 155.25871 * 7 6 5 9 9 O 1.21280 * 120.00340 * 179.68150 * 8 7 6 10 10 C 1.50701 * 119.99919 * 359.68528 * 8 7 6 11 11 C 1.52998 * 109.47182 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.46854 * 53.97714 * 11 10 8 13 13 C 1.50697 * 109.47226 * 293.97450 * 11 10 8 14 14 H 1.07996 * 119.99857 * 327.00727 * 13 11 10 15 15 C 1.37882 * 120.00132 * 147.00582 * 13 11 10 16 16 N 1.31504 * 119.99922 * 173.49766 * 15 13 11 17 17 Si 1.86801 * 119.99976 * 353.76833 * 15 13 11 18 18 H 1.48500 * 109.47267 * 274.90899 * 17 15 13 19 19 H 1.48506 * 109.46933 * 34.90530 * 17 15 13 20 20 H 1.48495 * 109.47054 * 154.90253 * 17 15 13 21 21 C 1.50697 * 109.47272 * 173.97321 * 11 10 8 22 22 C 1.38236 * 120.00036 * 65.21665 * 21 11 10 23 23 C 1.38235 * 119.99860 * 179.78660 * 22 21 11 24 24 C 1.38229 * 120.00439 * 0.44566 * 23 22 21 25 25 C 1.38235 * 119.99780 * 359.81010 * 24 23 22 26 26 C 1.38237 * 120.00072 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.46711 * 297.72155 * 1 2 3 28 28 H 1.08996 * 109.47277 * 57.71615 * 1 2 3 29 29 H 1.08998 * 109.47276 * 177.72224 * 1 2 3 30 30 H 1.08995 * 109.47003 * 182.27747 * 3 2 1 31 31 H 1.08995 * 109.47354 * 302.28270 * 3 2 1 32 32 H 1.09003 * 109.46640 * 62.27990 * 3 2 1 33 33 H 1.08998 * 110.60218 * 22.32723 * 4 2 1 34 34 H 1.09003 * 110.60099 * 145.12461 * 4 2 1 35 35 H 1.08999 * 110.34075 * 280.95066 * 6 5 4 36 36 H 1.08997 * 110.17541 * 158.99152 * 6 5 4 37 37 H 1.08995 * 109.47528 * 59.99731 * 10 8 7 38 38 H 1.08998 * 109.47166 * 299.99581 * 10 8 7 39 39 H 0.97010 * 120.00341 * 180.27303 * 16 15 13 40 40 H 1.08002 * 119.99823 * 359.97438 * 22 21 11 41 41 H 1.08001 * 119.99956 * 180.27755 * 23 22 21 42 42 H 1.08004 * 120.00238 * 179.83307 * 24 23 22 43 43 H 1.08001 * 120.00387 * 180.02562 * 25 24 23 44 44 H 1.08004 * 120.00065 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0618 1.4346 0.0000 4 6 2.0678 -0.7757 -1.2225 5 8 2.3284 -2.0984 -0.6975 6 6 2.8526 -1.8481 0.6267 7 7 2.0443 -0.7392 1.1703 8 6 1.8252 -0.4558 2.4695 9 8 1.1396 0.4969 2.7752 10 6 2.4320 -1.3225 3.5426 11 6 2.0318 -0.7862 4.9185 12 1 0.9466 -0.6987 4.9726 13 6 2.6563 0.5688 5.1305 14 1 3.6228 0.7908 4.7029 15 6 1.9937 1.5251 5.8705 16 7 2.5905 2.6596 6.1638 17 14 0.2511 1.2060 6.4629 18 1 -0.7107 1.5747 5.3932 19 1 0.0963 -0.2336 6.7930 20 1 -0.0176 2.0230 7.6734 21 6 2.5132 -1.7339 5.9866 22 6 3.8684 -1.9218 6.1842 23 6 4.3100 -2.7878 7.1670 24 6 3.3965 -3.4730 7.9460 25 6 2.0413 -3.2891 7.7449 26 6 1.5996 -2.4197 6.7651 27 1 -0.3633 0.4781 0.9098 28 1 -0.3633 0.5489 -0.8688 29 1 -0.3634 -1.0268 -0.0408 30 1 3.1509 1.4183 -0.0408 31 1 1.6735 1.9661 -0.8688 32 1 1.7399 1.9414 0.9098 33 1 1.3167 -0.8171 -2.0113 34 1 2.9860 -0.3195 -1.5925 35 1 3.9015 -1.5569 0.5702 36 1 2.7407 -2.7358 1.2493 37 1 3.5179 -1.3091 3.4497 38 1 2.0705 -2.3448 3.4316 39 1 2.1258 3.3309 6.6878 40 1 4.5821 -1.3897 5.5728 41 1 5.3688 -2.9313 7.3244 42 1 3.7416 -4.1516 8.7121 43 1 1.3275 -3.8240 8.3538 44 1 0.5408 -2.2764 6.6077 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597621362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:01 Heat of formation + Delta-G solvation = -67.615859 kcal Electronic energy + Delta-G solvation = -25674.098561 eV Core-core repulsion = 22169.784417 eV Total energy + Delta-G solvation = -3504.314145 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 14.50 seconds Orbital eigenvalues (eV) -41.68358 -40.19953 -39.19865 -36.05877 -35.43687 -34.00978 -33.41761 -31.59870 -30.33501 -28.37490 -27.94219 -27.32405 -26.10847 -24.41514 -23.31482 -22.39430 -20.94326 -19.78934 -19.03196 -18.12265 -17.67153 -17.28747 -16.69851 -16.33090 -16.03598 -16.02815 -15.62083 -15.33591 -15.25869 -14.80514 -14.56030 -14.41120 -14.18382 -14.07913 -13.91027 -13.70236 -13.37175 -13.29384 -13.01567 -12.88437 -12.73117 -12.63699 -12.35617 -12.09536 -11.92336 -11.91177 -11.80434 -11.48591 -11.11811 -11.02647 -10.65459 -10.52664 -9.71410 -9.61331 -9.30695 -8.24074 -6.19822 0.68733 0.73232 1.29471 1.36646 1.39244 1.82455 1.91949 2.39426 2.86109 3.07531 3.22845 3.55911 3.69580 3.84732 4.01057 4.09994 4.13865 4.28145 4.31251 4.39282 4.41446 4.47266 4.53410 4.57006 4.60677 4.62205 4.66894 4.79298 4.84161 4.84909 4.86064 4.98989 5.10887 5.18514 5.22501 5.33189 5.37606 5.40450 5.66198 5.74763 5.77392 5.82751 6.02599 6.32120 6.35946 6.54539 6.78903 7.38717 7.43976 8.92651 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014169 B = 0.005444 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.731250 B = 5142.383902 C = 6297.043105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.117 3.883 3 C -0.149 4.149 4 C 0.054 3.946 5 O -0.377 6.377 6 C 0.259 3.741 7 N -0.646 5.646 8 C 0.537 3.463 9 O -0.545 6.545 10 C -0.108 4.108 11 C 0.059 3.941 12 H 0.030 0.970 13 C -0.463 4.463 14 H 0.036 0.964 15 C 0.025 3.975 16 N -0.951 5.951 17 Si 0.919 3.081 18 H -0.289 1.289 19 H -0.231 1.231 20 H -0.298 1.298 21 C -0.064 4.064 22 C -0.117 4.117 23 C -0.125 4.125 24 C -0.139 4.139 25 C -0.125 4.125 26 C -0.152 4.152 27 H 0.035 0.965 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.031 0.969 33 H 0.128 0.872 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.258 0.742 40 H 0.110 0.890 41 H 0.139 0.861 42 H 0.146 0.854 43 H 0.139 0.861 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.748 -13.898 -11.269 17.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.033 3.967 3 C -0.207 4.207 4 C -0.022 4.022 5 O -0.293 6.293 6 C 0.099 3.901 7 N -0.390 5.390 8 C 0.327 3.673 9 O -0.421 6.421 10 C -0.148 4.148 11 C 0.040 3.960 12 H 0.049 0.951 13 C -0.500 4.500 14 H 0.054 0.946 15 C -0.171 4.171 16 N -0.593 5.593 17 Si 0.746 3.254 18 H -0.216 1.216 19 H -0.154 1.154 20 H -0.225 1.225 21 C -0.065 4.065 22 C -0.135 4.135 23 C -0.143 4.143 24 C -0.157 4.157 25 C -0.142 4.142 26 C -0.171 4.171 27 H 0.054 0.946 28 H 0.109 0.891 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.051 0.949 33 H 0.146 0.854 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.133 0.867 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.067 0.933 40 H 0.128 0.872 41 H 0.157 0.843 42 H 0.164 0.836 43 H 0.157 0.843 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.307 -13.449 -11.035 17.399 hybrid contribution -0.807 1.196 0.641 1.579 sum -0.499 -12.253 -10.394 16.075 Atomic orbital electron populations 1.22004 0.93656 1.02255 1.02551 1.21973 0.95428 0.93255 0.86086 1.22004 1.01150 0.95021 1.02481 1.23994 1.02403 0.81298 0.94531 1.89380 1.84843 1.26727 1.28333 1.23583 0.93279 0.90631 0.82572 1.49615 1.52742 1.31580 1.05051 1.20596 0.79991 0.85105 0.81580 1.90715 1.39658 1.30252 1.81443 1.21621 1.02060 0.98371 0.92755 1.17976 0.95965 0.92356 0.89743 0.95142 1.20766 1.03496 0.95692 1.30085 0.94613 1.25562 1.00584 0.94901 0.96053 1.70025 1.38837 1.08986 1.41409 0.86181 0.82399 0.80200 0.76615 1.21569 1.15367 1.22534 1.20468 0.94238 0.93951 0.97797 1.21001 0.95052 0.98180 0.99256 1.21396 1.00615 0.96693 0.95578 1.21337 0.92841 1.01019 1.00513 1.21328 0.96795 0.98416 0.97701 1.21245 0.98988 0.98620 0.98204 0.94588 0.89054 0.92170 0.92108 0.88898 0.94948 0.85367 0.89023 0.89644 0.86667 0.88559 0.87976 0.93322 0.87231 0.84291 0.83583 0.84283 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 8.53 71.98 0.61 -3.29 16 2 C 0.12 3.07 0.95 3.87 0.00 3.07 16 3 C -0.15 -4.12 8.58 71.98 0.62 -3.51 16 4 C 0.05 0.99 6.85 72.47 0.50 1.48 16 5 O -0.38 -8.21 11.80 -148.98 -1.76 -9.97 16 6 C 0.26 5.79 7.60 127.56 0.97 6.76 16 7 N -0.65 -19.78 2.89 -880.07 -2.55 -22.33 16 8 C 0.54 21.41 7.29 87.66 0.64 22.05 16 9 O -0.55 -27.45 13.07 -3.03 -0.04 -27.49 16 10 C -0.11 -3.99 4.04 29.85 0.12 -3.87 16 11 C 0.06 2.70 1.23 -12.29 -0.02 2.68 16 12 H 0.03 1.50 4.87 -2.39 -0.01 1.49 16 13 C -0.46 -26.16 6.92 25.60 0.18 -25.99 16 14 H 0.04 2.22 8.06 -2.91 -0.02 2.19 16 15 C 0.03 1.54 5.47 84.66 0.46 2.01 16 16 N -0.95 -62.20 13.96 21.45 0.30 -61.90 16 17 Si 0.92 48.58 27.02 68.60 1.85 50.43 16 18 H -0.29 -15.86 7.11 99.48 0.71 -15.15 16 19 H -0.23 -10.93 5.14 99.48 0.51 -10.42 16 20 H -0.30 -15.67 7.11 99.48 0.71 -14.96 16 21 C -0.06 -2.62 4.77 -19.87 -0.09 -2.71 16 22 C -0.12 -4.38 8.89 22.27 0.20 -4.18 16 23 C -0.12 -3.83 10.05 22.27 0.22 -3.60 16 24 C -0.14 -3.88 10.05 22.27 0.22 -3.65 16 25 C -0.12 -3.78 10.05 22.27 0.22 -3.56 16 26 C -0.15 -5.67 8.97 22.27 0.20 -5.47 16 27 H 0.03 1.25 6.94 -2.39 -0.02 1.23 16 28 H 0.09 1.82 8.14 -2.39 -0.02 1.81 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 1.60 8.10 -2.39 -0.02 1.58 16 31 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.03 1.21 7.06 -2.39 -0.02 1.20 16 33 H 0.13 1.70 7.86 -2.39 -0.02 1.68 16 34 H 0.09 1.35 7.84 -2.39 -0.02 1.33 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.12 2.22 7.60 -2.39 -0.02 2.20 16 37 H 0.10 3.30 7.93 -2.39 -0.02 3.28 16 38 H 0.10 3.07 7.94 -2.39 -0.02 3.05 16 39 H 0.26 16.15 8.31 -92.70 -0.77 15.38 16 40 H 0.11 4.21 7.83 -2.91 -0.02 4.19 16 41 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 42 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 43 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 44 H 0.11 3.98 7.09 -2.91 -0.02 3.96 16 Total: -1.00 -77.94 352.49 3.65 -74.29 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.78 Total: 18.73 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: 5.06 Total: -21.77 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -2.25 Total: -84.23 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -1.80 Total: -37.46 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 1.85 Total: 50.43 kcal Total: -77.94 3.65 -74.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597621362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.673 kcal (2) G-P(sol) polarization free energy of solvation -77.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.50 seconds