Wall clock time and date at job start Tue Mar 31 2020 09:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50707 * 109.47191 * 2 1 4 4 C 1.38090 * 119.95939 * 265.00116 * 3 2 1 5 5 C 1.38508 * 120.39102 * 180.25373 * 4 3 2 6 6 C 1.37825 * 120.29658 * 359.48804 * 5 4 3 7 7 C 1.39667 * 119.90841 * 0.53336 * 6 5 4 8 8 C 1.47536 * 120.19096 * 179.74478 * 7 6 5 9 9 O 1.21593 * 120.00046 * 233.90825 * 8 7 6 10 10 N 1.34777 * 120.00228 * 53.90664 * 8 7 6 11 11 C 1.46931 * 120.63025 * 5.50798 * 10 8 7 12 12 C 1.53624 * 108.54483 * 126.36560 * 11 10 8 13 13 C 1.53039 * 109.24173 * 54.85485 * 12 11 10 14 14 C 1.53038 * 109.54004 * 298.51009 * 13 12 11 15 15 H 1.08991 * 109.49955 * 301.41594 * 14 13 12 16 16 C 1.50702 * 109.52619 * 181.32891 * 14 13 12 17 17 H 1.08001 * 119.99768 * 0.14979 * 16 14 13 18 18 C 1.37871 * 120.00154 * 180.14392 * 16 14 13 19 19 N 1.31516 * 119.99945 * 0.02562 * 18 16 14 20 20 Si 1.86806 * 119.99967 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47031 * 90.00226 * 20 18 16 22 22 H 1.48503 * 109.46846 * 210.00407 * 20 18 16 23 23 H 1.48502 * 109.46917 * 330.00192 * 20 18 16 24 24 C 1.46928 * 120.63515 * 185.78050 * 10 8 7 25 25 C 1.38663 * 119.95655 * 85.02527 * 3 2 1 26 26 O 1.35658 * 120.15075 * 0.02562 * 25 3 2 27 27 H 1.09000 * 109.47137 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.47129 * 299.99904 * 1 2 3 29 29 H 1.09001 * 109.47595 * 59.99590 * 1 2 3 30 30 H 1.08997 * 109.47064 * 240.00528 * 2 1 3 31 31 H 1.08993 * 109.47393 * 120.00158 * 2 1 3 32 32 H 1.08007 * 119.80665 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.84759 * 179.74765 * 5 4 3 34 34 H 1.08000 * 120.04861 * 180.25698 * 6 5 4 35 35 H 1.08994 * 109.58488 * 246.19929 * 11 10 8 36 36 H 1.09006 * 109.58270 * 6.62612 * 11 10 8 37 37 H 1.09007 * 109.63055 * 294.86662 * 12 11 10 38 38 H 1.08992 * 109.42991 * 174.72630 * 12 11 10 39 39 H 1.08999 * 109.45918 * 178.49070 * 13 12 11 40 40 H 1.08997 * 109.46005 * 58.53469 * 13 12 11 41 41 H 0.97002 * 119.99906 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.58547 * 353.38213 * 24 10 8 43 43 H 1.09002 * 109.58113 * 113.79969 * 24 10 8 44 44 H 0.96702 * 113.99957 * 90.00065 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3605 2.0363 -1.1918 5 6 2.8280 3.3400 -1.2018 6 6 2.9605 4.0402 -0.0220 7 6 2.6326 3.4298 1.1906 8 6 2.7774 4.1716 2.4577 9 8 3.4325 3.6998 3.3670 10 7 2.1835 5.3722 2.6074 11 6 1.2915 5.9011 1.5665 12 6 -0.0515 6.2695 2.2149 13 6 0.1973 7.2328 3.3778 14 6 1.0691 6.5475 4.4326 15 1 0.5720 5.6433 4.7838 16 6 1.2869 7.4847 5.5924 17 1 0.8456 8.4704 5.5804 18 6 2.0494 7.0839 6.6689 19 7 2.5871 5.8838 6.6833 20 14 2.3188 8.2455 8.1069 21 1 1.2435 8.0470 9.1116 22 1 3.6369 7.9641 8.7302 23 1 2.2900 9.6487 7.6217 24 6 2.4204 6.1797 3.8118 25 6 2.1649 2.1084 1.1969 26 8 1.8439 1.5048 2.3686 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.2562 1.4963 -2.1214 33 1 3.0859 3.8114 -2.1386 34 1 3.3215 5.0580 -0.0348 35 1 1.7392 6.7877 1.1177 36 1 1.1330 5.1417 0.8007 37 1 -0.5381 5.3679 2.5871 38 1 -0.6916 6.7500 1.4751 39 1 -0.7556 7.5176 3.8237 40 1 0.7061 8.1234 3.0091 41 1 3.1239 5.6019 7.4405 42 1 3.0071 5.6043 4.5279 43 1 2.9583 7.0886 3.5422 44 1 2.5807 1.0368 2.7847 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597903028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:39 Heat of formation + Delta-G solvation = -66.960579 kcal Electronic energy + Delta-G solvation = -25517.350182 eV Core-core repulsion = 22013.064452 eV Total energy + Delta-G solvation = -3504.285730 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.43249 -38.74424 -36.69857 -36.42815 -34.22456 -33.25615 -31.75115 -30.46507 -29.54288 -29.08024 -25.22699 -24.95628 -24.03625 -22.79955 -21.78496 -21.28227 -19.75595 -18.54424 -18.01925 -16.84332 -16.20096 -16.08203 -15.55910 -15.41300 -14.63970 -14.49416 -14.18647 -13.94129 -13.73093 -13.63810 -13.17900 -13.12531 -12.75844 -12.55531 -12.32008 -12.21122 -11.95595 -11.80592 -11.77558 -11.46130 -11.04368 -10.96884 -10.88296 -10.49988 -10.43440 -10.35701 -10.20269 -9.85585 -9.33929 -9.10386 -8.90036 -8.72367 -8.59031 -8.40113 -7.70666 -5.96427 -4.05676 1.02291 1.20400 3.19445 3.32321 3.39601 3.41917 3.53100 3.86534 4.28248 4.44990 4.60865 4.72089 4.88134 5.02609 5.24291 5.29040 5.30267 5.33025 5.39758 5.41510 5.55614 5.65209 5.74076 5.78602 5.83995 5.93074 6.02492 6.15603 6.22607 6.25895 6.30000 6.34986 6.41914 6.63886 6.70103 6.72532 6.88812 7.01267 7.17696 7.31653 7.67164 7.77284 7.90878 8.03067 8.27434 8.41705 8.86704 8.98930 9.59801 11.08617 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.003968 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.681525 B = 7055.229118 C = 7410.057330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 C -0.116 4.116 4 C -0.093 4.093 5 C -0.133 4.133 6 C -0.081 4.081 7 C -0.138 4.138 8 C 0.555 3.445 9 O -0.531 6.531 10 N -0.598 5.598 11 C 0.107 3.893 12 C -0.133 4.133 13 C -0.110 4.110 14 C 0.040 3.960 15 H 0.029 0.971 16 C -0.521 4.521 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.879 5.879 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.113 3.887 25 C 0.154 3.846 26 O -0.485 6.485 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.263 0.737 42 H 0.123 0.877 43 H 0.042 0.958 44 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.354 -8.241 -17.921 19.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.117 4.117 4 C -0.112 4.112 5 C -0.151 4.151 6 C -0.100 4.100 7 C -0.142 4.142 8 C 0.342 3.658 9 O -0.408 6.408 10 N -0.330 5.330 11 C -0.017 4.017 12 C -0.171 4.171 13 C -0.148 4.148 14 C 0.021 3.979 15 H 0.047 0.953 16 C -0.560 4.560 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.007 4.007 25 C 0.107 3.893 26 O -0.296 6.296 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.141 0.859 43 H 0.061 0.939 44 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -1.438 -8.366 -17.387 19.349 hybrid contribution 0.586 0.547 0.849 1.168 sum -0.851 -7.819 -16.538 18.313 Atomic orbital electron populations 1.21726 0.94501 1.01570 1.02484 1.20375 0.96488 0.91848 1.02560 1.20167 1.01910 0.97095 0.92526 1.20999 0.98219 0.94948 0.97005 1.21024 1.01348 0.94780 0.97958 1.21200 0.98050 0.99841 0.90875 1.20619 1.03126 0.95494 0.94978 1.18032 0.80305 0.81194 0.86297 1.90790 1.41456 1.67389 1.41183 1.48422 1.44786 1.18211 1.21533 1.21821 0.90979 0.98500 0.90385 1.22012 0.95849 1.00551 0.98707 1.21626 1.00277 0.97317 0.95570 1.18960 0.90952 0.96128 0.91885 0.95257 1.21079 1.32268 1.00613 1.02018 0.92379 1.25058 0.95598 0.95101 0.98268 1.69901 1.33205 1.17702 1.30867 0.86601 0.77533 0.81198 0.82710 1.20688 1.21199 1.19922 1.22309 1.01460 0.93202 0.83711 1.18234 0.95431 0.89784 0.85806 1.84712 1.39223 1.71267 1.34381 0.92551 0.91900 0.92832 0.91243 0.90896 0.85642 0.85447 0.85228 0.92104 0.90878 0.92125 0.92292 0.93030 0.93211 0.92682 0.85890 0.93930 0.74608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.89 37.15 0.37 -1.03 16 2 C -0.08 -0.73 5.78 -27.88 -0.16 -0.89 16 3 C -0.12 -1.39 5.14 -104.52 -0.54 -1.93 16 4 C -0.09 -0.96 9.66 -39.54 -0.38 -1.34 16 5 C -0.13 -1.39 10.02 -39.63 -0.40 -1.79 16 6 C -0.08 -1.06 7.76 -39.20 -0.30 -1.37 16 7 C -0.14 -2.29 4.62 -104.85 -0.48 -2.77 16 8 C 0.56 11.75 6.83 -12.47 -0.09 11.67 16 9 O -0.53 -13.32 16.17 1.83 0.03 -13.29 16 10 N -0.60 -12.50 2.97 -173.72 -0.52 -13.02 16 11 C 0.11 1.78 5.59 -3.48 -0.02 1.76 16 12 C -0.13 -2.29 6.10 -26.39 -0.16 -2.45 16 13 C -0.11 -2.26 5.11 -26.69 -0.14 -2.40 16 14 C 0.04 1.01 2.25 -91.65 -0.21 0.81 16 15 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 16 C -0.52 -14.33 8.56 -34.44 -0.29 -14.63 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 19 N -0.88 -26.02 11.39 55.43 0.63 -25.39 16 20 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 24 C 0.11 2.80 5.41 -3.71 -0.02 2.78 16 25 C 0.15 2.33 6.67 -38.70 -0.26 2.07 16 26 O -0.48 -7.72 11.83 -22.13 -0.26 -7.99 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.54 8.05 -51.93 -0.42 0.12 16 31 H 0.07 0.70 7.69 -51.93 -0.40 0.30 16 32 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 33 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.13 1.57 7.75 -52.49 -0.41 1.17 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.08 5.37 -51.93 -0.28 0.81 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.12 3.55 5.11 -51.93 -0.27 3.29 16 43 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.40 5.09 9.06 45.56 0.41 5.51 16 LS Contribution 354.54 15.07 5.34 5.34 Total: -1.00 -32.93 354.54 -8.94 -41.86 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -5.97 Total: 5.89 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -3.17 Total: -9.85 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.12 Total: -38.41 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.23 Total: -21.28 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.93 -8.94 -41.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.096 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds