Wall clock time and date at job start Tue Mar 31 2020 09:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50707 * 109.47191 * 2 1 4 4 C 1.38090 * 119.95939 * 265.00116 * 3 2 1 5 5 C 1.38508 * 120.39102 * 180.25373 * 4 3 2 6 6 C 1.37825 * 120.29658 * 359.48804 * 5 4 3 7 7 C 1.39667 * 119.90841 * 0.53336 * 6 5 4 8 8 C 1.47536 * 120.19096 * 179.74478 * 7 6 5 9 9 O 1.21593 * 120.00046 * 233.90825 * 8 7 6 10 10 N 1.34777 * 120.00228 * 53.90664 * 8 7 6 11 11 C 1.46931 * 120.63025 * 5.50798 * 10 8 7 12 12 C 1.53624 * 108.54483 * 126.36560 * 11 10 8 13 13 C 1.53039 * 109.24173 * 54.85485 * 12 11 10 14 14 C 1.53038 * 109.54004 * 298.51009 * 13 12 11 15 15 H 1.08991 * 109.49955 * 301.41594 * 14 13 12 16 16 C 1.50702 * 109.52619 * 181.32891 * 14 13 12 17 17 H 1.08001 * 119.99768 * 0.14979 * 16 14 13 18 18 C 1.37871 * 120.00154 * 180.14392 * 16 14 13 19 19 N 1.31516 * 119.99945 * 0.02562 * 18 16 14 20 20 Si 1.86806 * 119.99967 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47031 * 90.00226 * 20 18 16 22 22 H 1.48503 * 109.46846 * 210.00407 * 20 18 16 23 23 H 1.48502 * 109.46917 * 330.00192 * 20 18 16 24 24 C 1.46928 * 120.63515 * 185.78050 * 10 8 7 25 25 C 1.38663 * 119.95655 * 85.02527 * 3 2 1 26 26 O 1.35658 * 120.15075 * 0.02562 * 25 3 2 27 27 H 1.09000 * 109.47137 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.47129 * 299.99904 * 1 2 3 29 29 H 1.09001 * 109.47595 * 59.99590 * 1 2 3 30 30 H 1.08997 * 109.47064 * 240.00528 * 2 1 3 31 31 H 1.08993 * 109.47393 * 120.00158 * 2 1 3 32 32 H 1.08007 * 119.80665 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.84759 * 179.74765 * 5 4 3 34 34 H 1.08000 * 120.04861 * 180.25698 * 6 5 4 35 35 H 1.08994 * 109.58488 * 246.19929 * 11 10 8 36 36 H 1.09006 * 109.58270 * 6.62612 * 11 10 8 37 37 H 1.09007 * 109.63055 * 294.86662 * 12 11 10 38 38 H 1.08992 * 109.42991 * 174.72630 * 12 11 10 39 39 H 1.08999 * 109.45918 * 178.49070 * 13 12 11 40 40 H 1.08997 * 109.46005 * 58.53469 * 13 12 11 41 41 H 0.97002 * 119.99906 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.58547 * 353.38213 * 24 10 8 43 43 H 1.09002 * 109.58113 * 113.79969 * 24 10 8 44 44 H 0.96702 * 113.99957 * 90.00065 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3605 2.0363 -1.1918 5 6 2.8280 3.3400 -1.2018 6 6 2.9605 4.0402 -0.0220 7 6 2.6326 3.4298 1.1906 8 6 2.7774 4.1716 2.4577 9 8 3.4325 3.6998 3.3670 10 7 2.1835 5.3722 2.6074 11 6 1.2915 5.9011 1.5665 12 6 -0.0515 6.2695 2.2149 13 6 0.1973 7.2328 3.3778 14 6 1.0691 6.5475 4.4326 15 1 0.5720 5.6433 4.7838 16 6 1.2869 7.4847 5.5924 17 1 0.8456 8.4704 5.5804 18 6 2.0494 7.0839 6.6689 19 7 2.5871 5.8838 6.6833 20 14 2.3188 8.2455 8.1069 21 1 1.2435 8.0470 9.1116 22 1 3.6369 7.9641 8.7302 23 1 2.2900 9.6487 7.6217 24 6 2.4204 6.1797 3.8118 25 6 2.1649 2.1084 1.1969 26 8 1.8439 1.5048 2.3686 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.2562 1.4963 -2.1214 33 1 3.0859 3.8114 -2.1386 34 1 3.3215 5.0580 -0.0348 35 1 1.7392 6.7877 1.1177 36 1 1.1330 5.1417 0.8007 37 1 -0.5381 5.3679 2.5871 38 1 -0.6916 6.7500 1.4751 39 1 -0.7556 7.5176 3.8237 40 1 0.7061 8.1234 3.0091 41 1 3.1239 5.6019 7.4405 42 1 3.0071 5.6043 4.5279 43 1 2.9583 7.0886 3.5422 44 1 2.5807 1.0368 2.7847 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597903028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:35 Heat of formation + Delta-G solvation = -88.563795 kcal Electronic energy + Delta-G solvation = -25518.286968 eV Core-core repulsion = 22013.064452 eV Total energy + Delta-G solvation = -3505.222515 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 3.95 seconds Orbital eigenvalues (eV) -41.68997 -40.15774 -38.27843 -37.65642 -35.47157 -34.88346 -33.47470 -31.83584 -31.09033 -29.99961 -27.16314 -26.54684 -24.91171 -24.10577 -23.46520 -22.27712 -21.33838 -20.02096 -19.20151 -18.58458 -17.87858 -17.38131 -16.86112 -16.64582 -16.49994 -15.71325 -15.66514 -15.26292 -14.88627 -14.84429 -14.63485 -14.45809 -14.28620 -14.06871 -13.74114 -13.51822 -13.25188 -12.97417 -12.90089 -12.86014 -12.57219 -12.34346 -12.29759 -12.23557 -11.88432 -11.79380 -11.67137 -11.52218 -11.15475 -10.98528 -10.68192 -10.54277 -9.80133 -9.56251 -9.43398 -8.12072 -6.30612 -0.02024 0.26598 1.39322 1.40129 1.51440 1.71569 2.17714 2.41007 2.64129 3.15425 3.25068 3.51347 3.75885 4.00912 4.01287 4.11464 4.26268 4.27702 4.35257 4.48834 4.52840 4.53863 4.61260 4.66853 4.72777 4.75942 4.82852 5.00890 5.03881 5.06228 5.12920 5.20789 5.22329 5.29670 5.32380 5.39999 5.41910 5.52436 5.54041 5.61089 5.84558 5.86606 5.96805 6.29705 6.60370 6.69129 6.82516 7.24303 7.40084 8.91415 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.003968 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.681525 B = 7055.229118 C = 7410.057330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.075 4.075 3 C -0.116 4.116 4 C -0.078 4.078 5 C -0.117 4.117 6 C -0.083 4.083 7 C -0.168 4.168 8 C 0.547 3.453 9 O -0.590 6.590 10 N -0.603 5.603 11 C 0.105 3.895 12 C -0.127 4.127 13 C -0.104 4.104 14 C 0.038 3.962 15 H -0.022 1.022 16 C -0.537 4.537 17 H 0.065 0.935 18 C 0.008 3.992 19 N -0.917 5.917 20 Si 0.961 3.039 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.259 1.259 24 C 0.126 3.874 25 C 0.128 3.872 26 O -0.507 6.507 27 H 0.071 0.929 28 H 0.031 0.969 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.168 0.832 33 H 0.169 0.831 34 H 0.138 0.862 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.039 0.961 38 H 0.106 0.894 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.259 0.741 42 H 0.075 0.925 43 H 0.043 0.957 44 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.044 -7.603 -22.134 23.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 C -0.116 4.116 4 C -0.096 4.096 5 C -0.135 4.135 6 C -0.102 4.102 7 C -0.172 4.172 8 C 0.336 3.664 9 O -0.471 6.471 10 N -0.334 5.334 11 C -0.017 4.017 12 C -0.165 4.165 13 C -0.141 4.141 14 C 0.019 3.981 15 H -0.004 1.004 16 C -0.575 4.575 17 H 0.083 0.917 18 C -0.191 4.191 19 N -0.555 5.555 20 Si 0.786 3.214 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.183 1.183 24 C 0.004 3.996 25 C 0.082 3.918 26 O -0.320 6.320 27 H 0.090 0.910 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.119 0.881 31 H 0.084 0.916 32 H 0.185 0.815 33 H 0.187 0.813 34 H 0.156 0.844 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.058 0.942 38 H 0.124 0.876 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.061 0.939 44 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -2.162 -7.705 -21.646 23.078 hybrid contribution 0.784 0.285 2.085 2.245 sum -1.379 -7.421 -19.561 20.967 Atomic orbital electron populations 1.21700 0.94526 1.02326 1.01450 1.20458 0.96357 0.90680 1.03749 1.20434 1.01329 0.98034 0.91825 1.21532 0.95529 0.94904 0.97627 1.21466 0.99190 0.94592 0.98223 1.21362 0.97831 1.00525 0.90456 1.20361 1.07094 0.96062 0.93683 1.18894 0.78939 0.80983 0.87555 1.90736 1.43882 1.68658 1.43825 1.48454 1.45496 1.18166 1.21242 1.22138 0.89813 1.00191 0.89560 1.21985 0.96889 0.99141 0.98442 1.21510 0.99199 0.98046 0.95372 1.18896 0.91801 0.94166 0.93257 1.00360 1.21516 1.31899 1.01098 1.02983 0.91712 1.25951 0.95334 0.96550 1.01283 1.70122 1.34073 1.19875 1.31469 0.85510 0.77229 0.79559 0.79100 1.20151 1.21285 1.18315 1.21727 1.00366 0.92774 0.84744 1.18591 0.96918 0.89749 0.86537 1.84676 1.40045 1.71593 1.35643 0.90971 0.94976 0.91729 0.88131 0.91643 0.81467 0.81306 0.84416 0.89312 0.88443 0.94196 0.87575 0.92929 0.91826 0.93163 0.90620 0.93919 0.74101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.89 71.98 0.71 -1.76 16 2 C -0.08 -1.27 5.78 29.85 0.17 -1.10 16 3 C -0.12 -2.50 5.14 -19.80 -0.10 -2.60 16 4 C -0.08 -1.21 9.66 22.30 0.22 -0.99 16 5 C -0.12 -1.86 10.02 22.24 0.22 -1.64 16 6 C -0.08 -1.98 7.76 22.52 0.17 -1.81 16 7 C -0.17 -5.62 4.62 -20.01 -0.09 -5.71 16 8 C 0.55 24.55 6.83 86.70 0.59 25.14 16 9 O -0.59 -32.36 16.17 -0.71 -0.01 -32.37 16 10 N -0.60 -26.19 2.97 -821.79 -2.44 -28.63 16 11 C 0.10 3.32 5.59 86.51 0.48 3.81 16 12 C -0.13 -4.17 6.10 30.82 0.19 -3.98 16 13 C -0.10 -4.22 5.11 30.62 0.16 -4.06 16 14 C 0.04 2.02 2.25 -11.46 -0.03 2.00 16 15 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 16 C -0.54 -30.51 8.56 25.60 0.22 -30.29 16 17 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 18 C 0.01 0.47 5.30 84.65 0.45 0.91 16 19 N -0.92 -57.78 11.39 21.45 0.24 -57.54 16 20 Si 0.96 45.26 29.54 68.60 2.03 47.29 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 23 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 24 C 0.13 6.61 5.41 86.36 0.47 7.08 16 25 C 0.13 3.93 6.67 22.84 0.15 4.08 16 26 O -0.51 -17.50 11.83 -86.44 -1.02 -18.52 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.10 1.10 8.05 -2.39 -0.02 1.08 16 31 H 0.06 1.21 7.69 -2.39 -0.02 1.19 16 32 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 33 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 34 H 0.14 2.98 7.75 -2.91 -0.02 2.96 16 35 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.10 2.66 5.37 -2.38 -0.01 2.65 16 37 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.05 2.09 8.14 -2.39 -0.02 2.08 16 40 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 42 H 0.08 4.75 5.11 -2.39 -0.01 4.73 16 43 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.40 11.75 9.06 -74.06 -0.67 11.07 16 Total: -1.00 -80.35 354.54 3.11 -77.24 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.33 Total: 23.45 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 3.99 Total: -10.92 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -2.19 Total: -86.16 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -1.03 Total: -50.90 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -80.35 3.11 -77.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.327 kcal (2) G-P(sol) polarization free energy of solvation -80.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.95 seconds