Wall clock time and date at job start Tue Mar 31 2020 09:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.46808 * 2 1 4 4 C 1.38542 * 119.80588 * 90.00203 * 3 2 1 5 5 C 1.37786 * 120.30253 * 180.29645 * 4 3 2 6 6 C 1.39717 * 119.90623 * 359.44961 * 5 4 3 7 7 C 1.47535 * 120.19174 * 180.27423 * 6 5 4 8 8 O 1.21588 * 119.99611 * 219.46830 * 7 6 5 9 9 N 1.34777 * 120.00045 * 39.47342 * 7 6 5 10 10 C 1.46929 * 120.62806 * 3.59579 * 9 7 6 11 11 C 1.53624 * 108.53894 * 126.37256 * 10 9 7 12 12 C 1.53047 * 109.24412 * 54.85353 * 11 10 9 13 13 C 1.53041 * 109.53946 * 298.51206 * 12 11 10 14 14 H 1.09001 * 109.49531 * 301.41461 * 13 12 11 15 15 C 1.50699 * 109.49660 * 181.31315 * 13 12 11 16 16 H 1.07997 * 120.00273 * 0.16076 * 15 13 12 17 17 C 1.37876 * 119.99738 * 180.15935 * 15 13 12 18 18 N 1.31519 * 120.00150 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99944 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.46998 * 90.00584 * 19 17 15 21 21 H 1.48500 * 109.47044 * 210.00298 * 19 17 15 22 22 H 1.48496 * 109.47317 * 330.00151 * 19 17 15 23 23 C 1.46923 * 120.62794 * 183.88014 * 9 7 6 24 24 C 1.40136 * 119.61223 * 0.54652 * 6 5 4 25 25 O 1.35652 * 120.14672 * 179.75305 * 24 6 5 26 26 C 1.38055 * 119.80524 * 270.01540 * 3 2 1 27 27 H 1.09003 * 109.46854 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47154 * 299.99814 * 1 2 3 29 29 H 1.09001 * 109.46942 * 60.00657 * 1 2 3 30 30 H 1.08997 * 109.47390 * 239.99689 * 2 1 3 31 31 H 1.08997 * 109.47052 * 120.00093 * 2 1 3 32 32 H 1.07998 * 119.85375 * 0.02562 * 4 3 2 33 33 H 1.08000 * 120.05144 * 179.70286 * 5 4 3 34 34 H 1.08991 * 109.58670 * 246.19999 * 10 9 7 35 35 H 1.08999 * 109.58473 * 6.63512 * 10 9 7 36 36 H 1.09008 * 109.63671 * 294.86775 * 11 10 9 37 37 H 1.08994 * 109.46037 * 174.73676 * 11 10 9 38 38 H 1.08999 * 109.46189 * 178.48806 * 12 11 10 39 39 H 1.09001 * 109.44434 * 58.52096 * 12 11 10 40 40 H 0.97005 * 119.99935 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.58939 * 353.37347 * 23 9 7 42 42 H 1.09005 * 109.58554 * 113.79761 * 23 9 7 43 43 H 0.96699 * 114.00121 * 269.97429 * 25 24 6 44 44 H 1.08010 * 119.95773 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2618 2.0701 1.2021 5 6 2.7152 3.3711 1.2141 6 6 2.9559 4.0360 0.0091 7 6 3.4472 5.4272 0.0146 8 8 3.0230 6.2249 -0.7991 9 7 4.3663 5.8137 0.9214 10 6 4.9463 4.8432 1.8598 11 6 6.4771 4.9148 1.7523 12 6 6.9319 6.3582 1.9804 13 6 6.3309 7.2609 0.9005 14 1 6.6456 6.9109 -0.0826 15 6 6.8051 8.6763 1.1070 16 1 7.4709 8.9089 1.9249 17 6 6.3890 9.6744 0.2517 18 7 5.5778 9.3913 -0.7441 19 14 6.9773 11.4289 0.5072 20 1 8.2351 11.6446 -0.2521 21 1 5.9391 12.3744 0.0241 22 1 7.2254 11.6623 1.9525 23 6 4.8025 7.2148 0.9946 24 6 2.7225 3.3758 -1.2047 25 8 2.9477 4.0127 -2.3810 26 6 2.2607 2.0679 -1.1979 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.0805 1.5556 2.1342 33 1 2.8883 3.8750 2.1536 34 1 4.6368 5.0875 2.8759 35 1 4.6071 3.8395 1.6034 36 1 6.7905 4.5870 0.7611 37 1 6.9247 4.2688 2.5075 38 1 8.0196 6.4083 1.9316 39 1 6.5965 6.6935 2.9619 40 1 5.2847 10.0937 -1.3456 41 1 4.3684 7.7763 0.1674 42 1 4.4815 7.6485 1.9417 43 1 2.1801 4.4916 -2.7223 44 1 2.0788 1.5553 -2.1311 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597906307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:01 Heat of formation + Delta-G solvation = -62.007192 kcal Electronic energy + Delta-G solvation = -25239.710561 eV Core-core repulsion = 21735.639626 eV Total energy + Delta-G solvation = -3504.070935 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.42796 -38.67297 -37.10139 -36.38003 -34.21387 -33.14437 -31.71315 -30.40528 -29.73637 -29.21701 -25.38454 -25.06198 -23.77377 -22.76536 -21.70580 -21.42730 -19.99820 -18.65953 -17.65279 -17.03473 -16.19657 -16.10299 -15.48235 -15.25975 -14.63583 -14.43037 -14.26071 -14.09434 -13.82536 -13.68821 -13.43645 -13.09585 -12.88162 -12.58746 -12.46664 -12.19980 -11.86343 -11.77443 -11.69551 -11.53376 -11.19100 -10.96515 -10.84008 -10.54493 -10.42124 -10.36382 -10.19973 -9.85512 -9.30055 -9.10116 -8.92863 -8.73632 -8.56548 -8.39969 -7.69680 -5.96245 -4.05534 0.94436 1.22539 3.17420 3.32351 3.39664 3.41930 3.60520 3.90794 4.25831 4.45077 4.54317 4.67500 4.88819 4.95860 5.06848 5.14832 5.28807 5.30132 5.33311 5.41450 5.54261 5.61300 5.62034 5.69343 5.77770 5.88413 5.93580 6.00129 6.16746 6.22431 6.30448 6.34324 6.41172 6.63704 6.69943 6.71780 6.88635 7.01033 7.18198 7.31950 7.67481 7.81403 7.90979 8.03272 8.28199 8.41867 8.89011 8.99216 9.59887 11.08752 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.026898 B = 0.003651 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.738597 B = 7666.812746 C = 8302.260512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.054 4.054 4 C -0.139 4.139 5 C -0.074 4.074 6 C -0.152 4.152 7 C 0.553 3.447 8 O -0.529 6.529 9 N -0.598 5.598 10 C 0.097 3.903 11 C -0.134 4.134 12 C -0.110 4.110 13 C 0.040 3.960 14 H 0.029 0.971 15 C -0.521 4.521 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.879 5.879 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.113 3.887 24 C 0.162 3.838 25 O -0.486 6.486 26 C -0.154 4.154 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.127 0.873 33 H 0.136 0.864 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.263 0.737 41 H 0.123 0.877 42 H 0.042 0.958 43 H 0.399 0.601 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.857 -18.767 3.913 21.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.054 4.054 4 C -0.157 4.157 5 C -0.092 4.092 6 C -0.156 4.156 7 C 0.340 3.660 8 O -0.407 6.407 9 N -0.330 5.330 10 C -0.027 4.027 11 C -0.172 4.172 12 C -0.148 4.148 13 C 0.021 3.979 14 H 0.047 0.953 15 C -0.560 4.560 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.516 5.516 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.007 4.007 24 C 0.116 3.884 25 O -0.297 6.297 26 C -0.173 4.173 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.145 0.855 33 H 0.153 0.847 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.141 0.859 42 H 0.061 0.939 43 H 0.257 0.743 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.616 -18.439 3.374 20.630 hybrid contribution -0.024 1.188 0.093 1.191 sum -8.640 -17.251 3.467 19.603 Atomic orbital electron populations 1.21753 0.94537 1.01733 1.02428 1.20582 0.96295 0.92349 1.03102 1.19856 0.96945 0.96048 0.92594 1.20921 1.02155 0.94899 0.97685 1.21382 0.96207 0.94413 0.97226 1.20652 1.05240 0.95890 0.93840 1.18016 0.80193 0.86452 0.81377 1.90772 1.58338 1.53779 1.37793 1.48395 1.39645 1.11688 1.33319 1.22130 0.94524 0.93020 0.92988 1.22028 0.94693 0.99088 1.01396 1.21631 0.99834 0.93049 1.00298 1.18962 0.90558 0.94258 0.94132 0.95295 1.21074 1.29213 0.92274 1.13421 0.92380 1.25066 0.94961 0.99055 0.94999 1.69902 1.32828 1.33065 1.15834 0.86595 0.78436 0.84634 0.78343 1.20698 1.21199 1.19940 1.22303 0.98478 0.77129 1.02740 1.18430 0.94429 0.90662 0.84881 1.84692 1.41172 1.69199 1.34679 1.21224 1.02740 0.94807 0.98510 0.92351 0.92392 0.92471 0.90857 0.90721 0.85491 0.84671 0.91995 0.90066 0.92138 0.92273 0.93039 0.93214 0.92671 0.85869 0.93942 0.74309 0.85159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.62 16 2 C -0.09 -0.64 6.05 -27.88 -0.17 -0.81 16 3 C -0.05 -0.56 5.14 -104.58 -0.54 -1.10 16 4 C -0.14 -1.46 9.67 -39.63 -0.38 -1.84 16 5 C -0.07 -0.96 7.34 -39.19 -0.29 -1.25 16 6 C -0.15 -2.54 5.22 -104.84 -0.55 -3.09 16 7 C 0.55 11.75 7.17 -12.47 -0.09 11.66 16 8 O -0.53 -13.27 15.52 -10.89 -0.17 -13.44 16 9 N -0.60 -12.50 2.97 -173.73 -0.52 -13.01 16 10 C 0.10 1.58 4.91 -3.48 -0.02 1.56 16 11 C -0.13 -2.28 6.10 -26.38 -0.16 -2.44 16 12 C -0.11 -2.25 5.10 -26.69 -0.14 -2.39 16 13 C 0.04 1.01 2.25 -91.65 -0.21 0.81 16 14 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 15 C -0.52 -14.34 8.56 -34.44 -0.29 -14.64 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 18 N -0.88 -26.07 11.39 55.43 0.63 -25.44 16 19 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.11 2.81 5.40 -3.71 -0.02 2.79 16 24 C 0.16 2.51 6.68 -38.70 -0.26 2.25 16 25 O -0.49 -8.02 12.25 -34.84 -0.43 -8.44 16 26 C -0.15 -1.86 9.62 -39.48 -0.38 -2.24 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.14 1.60 6.38 -52.49 -0.33 1.27 16 34 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 35 H 0.08 1.16 4.50 -51.93 -0.23 0.92 16 36 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.12 3.56 5.11 -51.93 -0.27 3.30 16 42 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.40 5.19 9.06 45.56 0.41 5.60 16 44 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -33.23 352.18 -9.28 -42.51 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.87 Total: 5.71 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -3.21 Total: -9.68 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.12 Total: -38.45 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.60 Total: -21.88 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.23 -9.28 -42.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.499 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds