Wall clock time and date at job start Tue Mar 31 2020 09:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.46808 * 2 1 4 4 C 1.38542 * 119.80588 * 90.00203 * 3 2 1 5 5 C 1.37786 * 120.30253 * 180.29645 * 4 3 2 6 6 C 1.39717 * 119.90623 * 359.44961 * 5 4 3 7 7 C 1.47535 * 120.19174 * 180.27423 * 6 5 4 8 8 O 1.21588 * 119.99611 * 219.46830 * 7 6 5 9 9 N 1.34777 * 120.00045 * 39.47342 * 7 6 5 10 10 C 1.46929 * 120.62806 * 3.59579 * 9 7 6 11 11 C 1.53624 * 108.53894 * 126.37256 * 10 9 7 12 12 C 1.53047 * 109.24412 * 54.85353 * 11 10 9 13 13 C 1.53041 * 109.53946 * 298.51206 * 12 11 10 14 14 H 1.09001 * 109.49531 * 301.41461 * 13 12 11 15 15 C 1.50699 * 109.49660 * 181.31315 * 13 12 11 16 16 H 1.07997 * 120.00273 * 0.16076 * 15 13 12 17 17 C 1.37876 * 119.99738 * 180.15935 * 15 13 12 18 18 N 1.31519 * 120.00150 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99944 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.46998 * 90.00584 * 19 17 15 21 21 H 1.48500 * 109.47044 * 210.00298 * 19 17 15 22 22 H 1.48496 * 109.47317 * 330.00151 * 19 17 15 23 23 C 1.46923 * 120.62794 * 183.88014 * 9 7 6 24 24 C 1.40136 * 119.61223 * 0.54652 * 6 5 4 25 25 O 1.35652 * 120.14672 * 179.75305 * 24 6 5 26 26 C 1.38055 * 119.80524 * 270.01540 * 3 2 1 27 27 H 1.09003 * 109.46854 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47154 * 299.99814 * 1 2 3 29 29 H 1.09001 * 109.46942 * 60.00657 * 1 2 3 30 30 H 1.08997 * 109.47390 * 239.99689 * 2 1 3 31 31 H 1.08997 * 109.47052 * 120.00093 * 2 1 3 32 32 H 1.07998 * 119.85375 * 0.02562 * 4 3 2 33 33 H 1.08000 * 120.05144 * 179.70286 * 5 4 3 34 34 H 1.08991 * 109.58670 * 246.19999 * 10 9 7 35 35 H 1.08999 * 109.58473 * 6.63512 * 10 9 7 36 36 H 1.09008 * 109.63671 * 294.86775 * 11 10 9 37 37 H 1.08994 * 109.46037 * 174.73676 * 11 10 9 38 38 H 1.08999 * 109.46189 * 178.48806 * 12 11 10 39 39 H 1.09001 * 109.44434 * 58.52096 * 12 11 10 40 40 H 0.97005 * 119.99935 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.58939 * 353.37347 * 23 9 7 42 42 H 1.09005 * 109.58554 * 113.79761 * 23 9 7 43 43 H 0.96699 * 114.00121 * 269.97429 * 25 24 6 44 44 H 1.08010 * 119.95773 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2618 2.0701 1.2021 5 6 2.7152 3.3711 1.2141 6 6 2.9559 4.0360 0.0091 7 6 3.4472 5.4272 0.0146 8 8 3.0230 6.2249 -0.7991 9 7 4.3663 5.8137 0.9214 10 6 4.9463 4.8432 1.8598 11 6 6.4771 4.9148 1.7523 12 6 6.9319 6.3582 1.9804 13 6 6.3309 7.2609 0.9005 14 1 6.6456 6.9109 -0.0826 15 6 6.8051 8.6763 1.1070 16 1 7.4709 8.9089 1.9249 17 6 6.3890 9.6744 0.2517 18 7 5.5778 9.3913 -0.7441 19 14 6.9773 11.4289 0.5072 20 1 8.2351 11.6446 -0.2521 21 1 5.9391 12.3744 0.0241 22 1 7.2254 11.6623 1.9525 23 6 4.8025 7.2148 0.9946 24 6 2.7225 3.3758 -1.2047 25 8 2.9477 4.0127 -2.3810 26 6 2.2607 2.0679 -1.1979 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.0805 1.5556 2.1342 33 1 2.8883 3.8750 2.1536 34 1 4.6368 5.0875 2.8759 35 1 4.6071 3.8395 1.6034 36 1 6.7905 4.5870 0.7611 37 1 6.9247 4.2688 2.5075 38 1 8.0196 6.4083 1.9316 39 1 6.5965 6.6935 2.9619 40 1 5.2847 10.0937 -1.3456 41 1 4.3684 7.7763 0.1674 42 1 4.4815 7.6485 1.9417 43 1 2.1801 4.4916 -2.7223 44 1 2.0788 1.5553 -2.1311 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597906307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:55 Heat of formation + Delta-G solvation = -83.248698 kcal Electronic energy + Delta-G solvation = -25240.631662 eV Core-core repulsion = 21735.639626 eV Total energy + Delta-G solvation = -3504.992036 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.71145 -40.05527 -38.39693 -37.87835 -35.56178 -34.65128 -33.39247 -31.76216 -31.03132 -30.34936 -27.13267 -26.62626 -24.88360 -23.94791 -23.23202 -22.42518 -21.51103 -20.24445 -18.80224 -18.66022 -17.99819 -17.38763 -16.74762 -16.55537 -16.47688 -15.71095 -15.62261 -15.39091 -14.91856 -14.77243 -14.56518 -14.52266 -14.36986 -14.03442 -13.86324 -13.50975 -13.45152 -12.92362 -12.89990 -12.67024 -12.47689 -12.29481 -12.28201 -12.21451 -11.82725 -11.73320 -11.66071 -11.57176 -11.14851 -10.97612 -10.64612 -10.53451 -9.80624 -9.64357 -9.38184 -8.11831 -6.30274 -0.12905 0.25845 1.39136 1.39953 1.51210 1.79507 2.17528 2.40993 2.64455 3.15547 3.22362 3.52608 3.81561 3.86998 4.04089 4.12387 4.25806 4.29742 4.32261 4.44932 4.54533 4.56523 4.59270 4.70528 4.77089 4.80908 4.84579 4.96309 5.05485 5.12152 5.14845 5.21927 5.23550 5.26087 5.28267 5.36969 5.45494 5.52978 5.57536 5.62290 5.81549 5.87095 5.97833 6.30372 6.62564 6.71247 6.83041 7.27559 7.40343 8.91490 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.026898 B = 0.003651 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.738597 B = 7666.812746 C = 8302.260512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.040 4.040 4 C -0.125 4.125 5 C -0.071 4.071 6 C -0.183 4.183 7 C 0.542 3.458 8 O -0.587 6.587 9 N -0.604 5.604 10 C 0.093 3.907 11 C -0.128 4.128 12 C -0.104 4.104 13 C 0.038 3.962 14 H -0.022 1.022 15 C -0.536 4.536 16 H 0.065 0.935 17 C 0.007 3.993 18 N -0.916 5.916 19 Si 0.961 3.039 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.259 1.259 23 C 0.126 3.874 24 C 0.137 3.863 25 O -0.511 6.511 26 C -0.152 4.152 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.168 0.832 33 H 0.149 0.851 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.040 0.960 37 H 0.107 0.893 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.259 0.741 41 H 0.075 0.925 42 H 0.042 0.958 43 H 0.405 0.595 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.089 -22.030 6.841 24.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.040 4.040 4 C -0.142 4.142 5 C -0.090 4.090 6 C -0.187 4.187 7 C 0.332 3.668 8 O -0.469 6.469 9 N -0.335 5.335 10 C -0.029 4.029 11 C -0.166 4.166 12 C -0.142 4.142 13 C 0.019 3.981 14 H -0.004 1.004 15 C -0.574 4.574 16 H 0.083 0.917 17 C -0.193 4.193 18 N -0.555 5.555 19 Si 0.786 3.214 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.183 1.183 23 C 0.004 3.996 24 C 0.092 3.908 25 O -0.324 6.324 26 C -0.171 4.171 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.186 0.814 33 H 0.167 0.833 34 H 0.109 0.891 35 H 0.127 0.873 36 H 0.059 0.941 37 H 0.126 0.874 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.060 0.940 43 H 0.264 0.736 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.828 -21.744 6.344 24.310 hybrid contribution 0.004 2.087 -0.832 2.247 sum -8.824 -19.657 5.511 22.241 Atomic orbital electron populations 1.21759 0.93917 1.02744 1.02038 1.20684 0.96614 0.90112 1.04695 1.20325 0.94546 0.97395 0.91781 1.21348 0.99899 0.93607 0.99383 1.21538 0.95949 0.95372 0.96091 1.20397 1.08593 0.93609 0.96075 1.18869 0.79496 0.88206 0.80216 1.90719 1.60296 1.55893 1.39972 1.48419 1.39744 1.10939 1.34349 1.22506 0.93815 0.93251 0.93280 1.22008 0.95386 0.97292 1.01887 1.21519 0.99568 0.94367 0.98739 1.18896 0.91230 0.94578 0.93382 1.00373 1.21518 1.28987 0.93582 1.13346 0.91716 1.25965 0.95016 1.03597 0.94678 1.70125 1.34323 1.34108 1.16946 0.85508 0.77750 0.79181 0.78950 1.20172 1.21316 1.18326 1.21716 0.97819 0.79517 1.00543 1.18790 0.95942 0.92037 0.84072 1.84646 1.42371 1.69746 1.35623 1.21407 1.02050 0.93259 1.00340 0.90707 0.92375 0.93362 0.89992 0.88534 0.81445 0.83303 0.89067 0.87310 0.94121 0.87430 0.92980 0.91856 0.93182 0.90676 0.93970 0.73553 0.83478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.89 71.98 0.71 -0.67 16 2 C -0.08 -0.84 6.05 29.85 0.18 -0.66 16 3 C -0.04 -0.68 5.14 -19.84 -0.10 -0.78 16 4 C -0.12 -2.06 9.67 22.24 0.22 -1.85 16 5 C -0.07 -1.66 7.34 22.52 0.17 -1.50 16 6 C -0.18 -6.13 5.22 -20.01 -0.10 -6.24 16 7 C 0.54 24.35 7.17 86.70 0.62 24.97 16 8 O -0.59 -32.12 15.52 11.48 0.18 -31.94 16 9 N -0.60 -25.99 2.97 -821.83 -2.44 -28.43 16 10 C 0.09 2.84 4.91 86.51 0.42 3.26 16 11 C -0.13 -4.09 6.10 30.82 0.19 -3.90 16 12 C -0.10 -4.19 5.10 30.62 0.16 -4.04 16 13 C 0.04 2.03 2.25 -11.46 -0.03 2.01 16 14 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 15 C -0.54 -30.42 8.56 25.60 0.22 -30.20 16 16 H 0.06 3.50 7.74 -2.91 -0.02 3.47 16 17 C 0.01 0.38 5.30 84.65 0.45 0.83 16 18 N -0.92 -57.82 11.39 21.45 0.24 -57.58 16 19 Si 0.96 45.34 29.54 68.60 2.03 47.37 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 22 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 23 C 0.13 6.60 5.40 86.36 0.47 7.07 16 24 C 0.14 4.32 6.68 22.84 0.15 4.47 16 25 O -0.51 -18.13 12.25 -74.20 -0.91 -19.04 16 26 C -0.15 -3.41 9.62 22.34 0.21 -3.19 16 27 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16 31 H 0.10 0.64 8.08 -2.39 -0.02 0.62 16 32 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.15 3.01 6.38 -2.91 -0.02 3.00 16 34 H 0.09 2.30 8.12 -2.39 -0.02 2.28 16 35 H 0.11 2.77 4.50 -2.39 -0.01 2.76 16 36 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 41 H 0.07 4.71 5.11 -2.39 -0.01 4.70 16 42 H 0.04 2.14 8.14 -2.38 -0.02 2.12 16 43 H 0.41 11.91 9.06 -74.06 -0.67 11.24 16 44 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -80.52 352.18 3.37 -77.14 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.34 Total: 22.88 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 3.93 Total: -10.41 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -2.19 Total: -86.00 kcal Atomic # 8 Polarization: -50.25 SS G_CDS: -0.73 Total: -50.98 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -80.52 3.37 -77.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.105 kcal (2) G-P(sol) polarization free energy of solvation -80.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds