Wall clock time and date at job start Tue Mar 31 2020 09:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47148 * 2 1 4 4 C 1.38543 * 119.80217 * 269.97607 * 3 2 1 5 5 C 1.37787 * 120.29816 * 179.71934 * 4 3 2 6 6 C 1.39712 * 119.91003 * 0.55770 * 5 4 3 7 7 C 1.47530 * 120.19272 * 179.74353 * 6 5 4 8 8 O 1.21588 * 120.00069 * 234.35031 * 7 6 5 9 9 N 1.34776 * 120.00089 * 54.35753 * 7 6 5 10 10 C 1.46920 * 120.63264 * 175.85333 * 9 7 6 11 11 C 1.53194 * 108.77599 * 233.60337 * 10 9 7 12 12 C 1.53035 * 109.31206 * 305.36624 * 11 10 9 13 13 C 1.53037 * 109.54017 * 61.36509 * 12 11 10 14 14 H 1.08996 * 109.50197 * 58.61535 * 13 12 11 15 15 C 1.50694 * 109.49765 * 178.68353 * 13 12 11 16 16 H 1.08000 * 120.00153 * 359.93231 * 15 13 12 17 17 C 1.37881 * 120.00345 * 179.65666 * 15 13 12 18 18 N 1.31513 * 119.99436 * 0.27607 * 17 15 13 19 19 Si 1.86799 * 120.00401 * 180.27140 * 17 15 13 20 20 H 1.48501 * 109.46915 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46696 * 120.00295 * 19 17 15 22 22 H 1.48492 * 109.47173 * 240.00186 * 19 17 15 23 23 C 1.46937 * 120.60385 * 355.86680 * 9 7 6 24 24 C 1.40142 * 119.61312 * 359.46852 * 6 5 4 25 25 O 1.35654 * 120.15111 * 180.23154 * 24 6 5 26 26 C 1.38054 * 119.80458 * 89.99813 * 3 2 1 27 27 H 1.08996 * 109.47077 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47242 * 300.00185 * 1 2 3 29 29 H 1.08992 * 109.46980 * 59.99972 * 1 2 3 30 30 H 1.08997 * 109.47143 * 239.99651 * 2 1 3 31 31 H 1.09007 * 109.47090 * 119.99607 * 2 1 3 32 32 H 1.08000 * 119.85135 * 359.97438 * 4 3 2 33 33 H 1.08000 * 120.04674 * 180.30254 * 5 4 3 34 34 H 1.09003 * 109.58718 * 113.81462 * 10 9 7 35 35 H 1.09001 * 109.58526 * 353.39422 * 10 9 7 36 36 H 1.09003 * 109.49788 * 185.40658 * 11 10 9 37 37 H 1.09003 * 109.52032 * 65.33626 * 11 10 9 38 38 H 1.08998 * 109.46015 * 301.33964 * 12 11 10 39 39 H 1.09005 * 109.45705 * 181.38593 * 12 11 10 40 40 H 0.97004 * 120.00043 * 179.97438 * 18 17 15 41 41 H 1.09007 * 109.61275 * 6.62729 * 23 9 7 42 42 H 1.08994 * 109.56588 * 246.19757 * 23 9 7 43 43 H 0.96694 * 113.99606 * 89.99864 * 25 24 6 44 44 H 1.07999 * 119.96243 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2624 2.0699 -1.2022 5 6 2.7161 3.3708 -1.2141 6 6 2.9569 4.0358 -0.0092 7 6 3.4482 5.4268 -0.0147 8 8 4.4609 5.7163 0.5927 9 7 2.7745 6.3768 -0.6930 10 6 3.1992 7.7820 -0.6343 11 6 2.0031 8.6415 -0.2131 12 6 0.8315 8.3781 -1.1619 13 6 0.4230 6.9059 -1.0743 14 1 0.1457 6.6656 -0.0480 15 6 -0.7513 6.6548 -1.9847 16 1 -1.1661 7.4643 -2.5669 17 6 -1.2927 5.3902 -2.0787 18 7 -0.7877 4.4044 -1.3697 19 14 -2.7436 5.0773 -3.2129 20 1 -3.1207 6.3416 -3.8945 21 1 -2.3678 4.0609 -4.2283 22 1 -3.8952 4.5804 -2.4179 23 6 1.6010 6.0262 -1.5049 24 6 2.7234 3.3756 1.2047 25 8 2.9490 4.0124 2.3810 26 6 2.2610 2.0678 1.1979 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.0812 1.5552 -2.1342 33 1 2.8894 3.8745 -2.1537 34 1 3.5493 8.0993 -1.6167 35 1 4.0022 7.8909 0.0947 36 1 2.2783 9.6953 -0.2585 37 1 1.7112 8.3854 0.8054 38 1 1.1319 8.6116 -2.1833 39 1 -0.0130 9.0067 -0.8792 40 1 -1.1688 3.5148 -1.4355 41 1 1.3493 4.9769 -1.3501 42 1 1.8208 6.1998 -2.5582 43 1 2.1817 4.4918 2.7222 44 1 2.0801 1.5550 2.1310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597906308.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:07 Heat of formation + Delta-G solvation = -67.972465 kcal Electronic energy + Delta-G solvation = -26070.743687 eV Core-core repulsion = 22566.414079 eV Total energy + Delta-G solvation = -3504.329608 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.15566 -38.58985 -36.83107 -36.44993 -33.71785 -33.19746 -31.92677 -30.09188 -29.62890 -28.91606 -25.23732 -24.98898 -23.70022 -22.44926 -21.74302 -21.08934 -19.88308 -18.66326 -17.42526 -16.84099 -16.24082 -15.85269 -15.57915 -15.02072 -14.64766 -14.23823 -14.11376 -13.75644 -13.70016 -13.44386 -13.26868 -12.93069 -12.81542 -12.67465 -12.13640 -12.09456 -11.92208 -11.57072 -11.34065 -11.12879 -11.08997 -10.92126 -10.76650 -10.56495 -10.41064 -10.29694 -10.22637 -9.98186 -9.45704 -9.15755 -8.97846 -8.56961 -8.29922 -8.15716 -7.77594 -6.13443 -4.19073 1.40984 1.69933 3.19770 3.25259 3.29730 3.33457 3.69061 4.04856 4.32771 4.56117 4.94119 5.07497 5.12365 5.23321 5.35961 5.50500 5.53078 5.59503 5.61387 5.69293 5.77015 5.79219 5.98158 6.03002 6.08241 6.16608 6.25562 6.29886 6.35175 6.41196 6.48205 6.60451 6.62723 6.69179 6.78991 6.86220 6.90762 6.92954 7.11876 7.28251 7.47471 7.71508 7.89250 7.99295 8.12017 8.32466 8.80216 8.85659 9.46110 10.92341 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.009872 B = 0.007999 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.643744 B = 3499.527799 C = 5767.442317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.051 4.051 4 C -0.121 4.121 5 C -0.048 4.048 6 C -0.139 4.139 7 C 0.560 3.440 8 O -0.552 6.552 9 N -0.600 5.600 10 C 0.114 3.886 11 C -0.132 4.132 12 C -0.111 4.111 13 C 0.040 3.960 14 H 0.028 0.972 15 C -0.516 4.516 16 H 0.058 0.942 17 C 0.065 3.935 18 N -0.881 5.881 19 Si 0.889 3.111 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.093 3.907 24 C 0.153 3.847 25 O -0.491 6.491 26 C -0.150 4.150 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.262 0.738 41 H 0.129 0.871 42 H 0.044 0.956 43 H 0.389 0.611 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.339 -4.897 1.590 6.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.051 4.051 4 C -0.139 4.139 5 C -0.067 4.067 6 C -0.143 4.143 7 C 0.348 3.652 8 O -0.432 6.432 9 N -0.332 5.332 10 C -0.009 4.009 11 C -0.171 4.171 12 C -0.149 4.149 13 C 0.021 3.979 14 H 0.046 0.954 15 C -0.554 4.554 16 H 0.076 0.924 17 C -0.137 4.137 18 N -0.520 5.520 19 Si 0.717 3.283 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.028 4.028 24 C 0.107 3.893 25 O -0.301 6.301 26 C -0.169 4.169 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.147 0.853 42 H 0.063 0.937 43 H 0.245 0.755 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.399 -5.147 1.872 7.024 hybrid contribution -1.519 0.128 -0.660 1.661 sum 2.880 -5.018 1.212 5.911 Atomic orbital electron populations 1.21736 0.94363 1.01161 1.03104 1.20546 0.96512 0.92474 1.02447 1.19739 0.96819 0.95948 0.92592 1.20778 1.00985 0.94710 0.97439 1.21002 0.95089 0.94151 0.96457 1.20096 1.05325 0.94824 0.94037 1.18206 0.83342 0.85003 0.78672 1.90712 1.25050 1.82375 1.45069 1.48469 1.30562 1.06558 1.47615 1.21485 0.97185 0.81081 1.01149 1.21938 0.96496 0.98177 1.00446 1.21634 0.95744 0.99967 0.97562 1.18955 0.92448 0.88901 0.97608 0.95368 1.21140 1.13969 0.94889 1.25452 0.92364 1.24972 0.96824 0.96311 0.95583 1.69837 1.40991 1.01049 1.40082 0.86583 0.82717 0.78254 0.80759 1.19872 1.20993 1.21056 1.22704 0.82670 1.05584 0.91799 1.18224 0.96137 0.90792 0.84101 1.84744 1.40455 1.69409 1.35462 1.21028 1.02931 0.94682 0.98218 0.92872 0.92406 0.91891 0.91099 0.91320 0.85915 0.85587 0.92292 0.90159 0.92194 0.92280 0.93186 0.93033 0.92826 0.85304 0.93749 0.75485 0.85651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.89 37.16 0.37 -1.39 16 2 C -0.08 -0.97 6.05 -27.88 -0.17 -1.14 16 3 C -0.05 -0.77 5.14 -104.57 -0.54 -1.30 16 4 C -0.12 -1.95 9.67 -39.63 -0.38 -2.33 16 5 C -0.05 -0.88 7.43 -39.20 -0.29 -1.17 16 6 C -0.14 -2.77 4.89 -104.84 -0.51 -3.29 16 7 C 0.56 12.01 6.84 -12.47 -0.09 11.92 16 8 O -0.55 -13.07 16.21 2.65 0.04 -13.03 16 9 N -0.60 -12.28 2.97 -173.99 -0.52 -12.80 16 10 C 0.11 2.06 6.42 -3.71 -0.02 2.03 16 11 C -0.13 -2.28 6.08 -26.61 -0.16 -2.44 16 12 C -0.11 -2.18 5.11 -26.69 -0.14 -2.32 16 13 C 0.04 0.92 2.25 -91.65 -0.21 0.72 16 14 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 15 C -0.52 -12.96 8.57 -34.44 -0.30 -13.25 16 16 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.07 1.63 5.30 -17.82 -0.09 1.54 16 18 N -0.88 -22.09 11.38 55.43 0.63 -21.46 16 19 Si 0.89 19.72 29.54 -169.99 -5.02 14.70 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 C 0.09 2.03 4.50 -3.70 -0.02 2.01 16 24 C 0.15 2.85 6.71 -38.69 -0.26 2.59 16 25 O -0.49 -8.78 12.72 -21.30 -0.27 -9.05 16 26 C -0.15 -2.41 9.62 -39.47 -0.38 -2.79 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 31 H 0.07 0.72 8.08 -51.92 -0.42 0.30 16 32 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.13 2.23 7.38 -52.49 -0.39 1.84 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.46 7.03 -51.93 -0.36 1.10 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.26 6.34 8.31 -40.82 -0.34 6.00 16 41 H 0.13 2.92 2.85 -51.93 -0.15 2.77 16 42 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.39 5.53 9.06 45.56 0.41 5.94 16 44 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 354.67 15.07 5.34 5.34 Total: -1.00 -29.18 354.67 -8.92 -38.10 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -5.94 Total: 8.81 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -3.18 Total: -10.61 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.11 Total: -34.26 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.23 Total: -22.08 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.18 -8.92 -38.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906308.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.876 kcal (2) G-P(sol) polarization free energy of solvation -29.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds