Wall clock time and date at job start Tue Mar 31 2020 09:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47148 * 2 1 4 4 C 1.38543 * 119.80217 * 269.97607 * 3 2 1 5 5 C 1.37787 * 120.29816 * 179.71934 * 4 3 2 6 6 C 1.39712 * 119.91003 * 0.55770 * 5 4 3 7 7 C 1.47530 * 120.19272 * 179.74353 * 6 5 4 8 8 O 1.21588 * 120.00069 * 234.35031 * 7 6 5 9 9 N 1.34776 * 120.00089 * 54.35753 * 7 6 5 10 10 C 1.46920 * 120.63264 * 175.85333 * 9 7 6 11 11 C 1.53194 * 108.77599 * 233.60337 * 10 9 7 12 12 C 1.53035 * 109.31206 * 305.36624 * 11 10 9 13 13 C 1.53037 * 109.54017 * 61.36509 * 12 11 10 14 14 H 1.08996 * 109.50197 * 58.61535 * 13 12 11 15 15 C 1.50694 * 109.49765 * 178.68353 * 13 12 11 16 16 H 1.08000 * 120.00153 * 359.93231 * 15 13 12 17 17 C 1.37881 * 120.00345 * 179.65666 * 15 13 12 18 18 N 1.31513 * 119.99436 * 0.27607 * 17 15 13 19 19 Si 1.86799 * 120.00401 * 180.27140 * 17 15 13 20 20 H 1.48501 * 109.46915 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46696 * 120.00295 * 19 17 15 22 22 H 1.48492 * 109.47173 * 240.00186 * 19 17 15 23 23 C 1.46937 * 120.60385 * 355.86680 * 9 7 6 24 24 C 1.40142 * 119.61312 * 359.46852 * 6 5 4 25 25 O 1.35654 * 120.15111 * 180.23154 * 24 6 5 26 26 C 1.38054 * 119.80458 * 89.99813 * 3 2 1 27 27 H 1.08996 * 109.47077 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47242 * 300.00185 * 1 2 3 29 29 H 1.08992 * 109.46980 * 59.99972 * 1 2 3 30 30 H 1.08997 * 109.47143 * 239.99651 * 2 1 3 31 31 H 1.09007 * 109.47090 * 119.99607 * 2 1 3 32 32 H 1.08000 * 119.85135 * 359.97438 * 4 3 2 33 33 H 1.08000 * 120.04674 * 180.30254 * 5 4 3 34 34 H 1.09003 * 109.58718 * 113.81462 * 10 9 7 35 35 H 1.09001 * 109.58526 * 353.39422 * 10 9 7 36 36 H 1.09003 * 109.49788 * 185.40658 * 11 10 9 37 37 H 1.09003 * 109.52032 * 65.33626 * 11 10 9 38 38 H 1.08998 * 109.46015 * 301.33964 * 12 11 10 39 39 H 1.09005 * 109.45705 * 181.38593 * 12 11 10 40 40 H 0.97004 * 120.00043 * 179.97438 * 18 17 15 41 41 H 1.09007 * 109.61275 * 6.62729 * 23 9 7 42 42 H 1.08994 * 109.56588 * 246.19757 * 23 9 7 43 43 H 0.96694 * 113.99606 * 89.99864 * 25 24 6 44 44 H 1.07999 * 119.96243 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2624 2.0699 -1.2022 5 6 2.7161 3.3708 -1.2141 6 6 2.9569 4.0358 -0.0092 7 6 3.4482 5.4268 -0.0147 8 8 4.4609 5.7163 0.5927 9 7 2.7745 6.3768 -0.6930 10 6 3.1992 7.7820 -0.6343 11 6 2.0031 8.6415 -0.2131 12 6 0.8315 8.3781 -1.1619 13 6 0.4230 6.9059 -1.0743 14 1 0.1457 6.6656 -0.0480 15 6 -0.7513 6.6548 -1.9847 16 1 -1.1661 7.4643 -2.5669 17 6 -1.2927 5.3902 -2.0787 18 7 -0.7877 4.4044 -1.3697 19 14 -2.7436 5.0773 -3.2129 20 1 -3.1207 6.3416 -3.8945 21 1 -2.3678 4.0609 -4.2283 22 1 -3.8952 4.5804 -2.4179 23 6 1.6010 6.0262 -1.5049 24 6 2.7234 3.3756 1.2047 25 8 2.9490 4.0124 2.3810 26 6 2.2610 2.0678 1.1979 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.0812 1.5552 -2.1342 33 1 2.8894 3.8745 -2.1537 34 1 3.5493 8.0993 -1.6167 35 1 4.0022 7.8909 0.0947 36 1 2.2783 9.6953 -0.2585 37 1 1.7112 8.3854 0.8054 38 1 1.1319 8.6116 -2.1833 39 1 -0.0130 9.0067 -0.8792 40 1 -1.1688 3.5148 -1.4355 41 1 1.3493 4.9769 -1.3501 42 1 1.8208 6.1998 -2.5582 43 1 2.1817 4.4918 2.7222 44 1 2.0801 1.5550 2.1310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597906308.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:04 Heat of formation + Delta-G solvation = -84.334332 kcal Electronic energy + Delta-G solvation = -26071.453191 eV Core-core repulsion = 22566.414079 eV Total energy + Delta-G solvation = -3505.039112 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -41.64900 -40.05342 -38.36498 -37.91665 -35.03557 -34.94802 -33.46562 -31.69998 -31.00231 -30.23798 -26.98387 -26.57328 -25.01059 -23.85408 -23.21711 -22.41138 -21.45113 -20.21459 -18.79407 -18.52279 -17.99078 -17.35305 -17.02740 -16.47661 -16.35223 -15.70582 -15.60910 -15.21436 -15.00595 -14.72624 -14.60469 -14.48368 -14.32198 -14.05095 -13.75089 -13.57036 -13.39537 -12.86525 -12.81479 -12.74966 -12.40878 -12.26862 -12.25849 -12.18973 -11.84788 -11.74178 -11.64889 -11.59830 -11.17016 -10.88145 -10.67606 -10.46068 -9.67468 -9.57141 -9.37865 -8.03826 -6.16163 0.04550 0.37743 1.43540 1.48913 1.56928 1.64612 2.16693 2.48019 2.68020 3.22957 3.25548 3.59052 3.87204 3.90338 4.08843 4.12368 4.29270 4.31696 4.34796 4.49305 4.56003 4.57062 4.64456 4.69012 4.80030 4.84093 4.88623 4.99422 5.05187 5.10022 5.14535 5.19712 5.23694 5.26660 5.33746 5.36012 5.46721 5.61332 5.63368 5.67670 5.87535 5.88422 6.02551 6.32640 6.54942 6.71165 6.89870 7.17508 7.50994 9.00118 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.009872 B = 0.007999 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.643744 B = 3499.527799 C = 5767.442317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 C -0.044 4.044 4 C -0.125 4.125 5 C -0.059 4.059 6 C -0.172 4.172 7 C 0.557 3.443 8 O -0.583 6.583 9 N -0.600 5.600 10 C 0.108 3.892 11 C -0.122 4.122 12 C -0.107 4.107 13 C 0.040 3.960 14 H -0.008 1.008 15 C -0.538 4.538 16 H 0.052 0.948 17 C 0.030 3.970 18 N -0.892 5.892 19 Si 0.943 3.057 20 H -0.275 1.275 21 H -0.278 1.278 22 H -0.286 1.286 23 C 0.103 3.897 24 C 0.136 3.864 25 O -0.502 6.502 26 C -0.152 4.152 27 H 0.077 0.923 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.146 0.854 33 H 0.122 0.878 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.047 0.953 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.263 0.737 41 H 0.123 0.877 42 H 0.040 0.960 43 H 0.400 0.600 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.842 -6.036 1.075 6.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.044 4.044 4 C -0.143 4.143 5 C -0.078 4.078 6 C -0.176 4.176 7 C 0.346 3.654 8 O -0.465 6.465 9 N -0.331 5.331 10 C -0.014 4.014 11 C -0.160 4.160 12 C -0.145 4.145 13 C 0.021 3.979 14 H 0.010 0.990 15 C -0.576 4.576 16 H 0.070 0.930 17 C -0.172 4.172 18 N -0.529 5.529 19 Si 0.770 3.230 20 H -0.200 1.200 21 H -0.204 1.204 22 H -0.212 1.212 23 C -0.018 4.018 24 C 0.091 3.909 25 O -0.314 6.314 26 C -0.170 4.170 27 H 0.096 0.904 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.163 0.837 33 H 0.140 0.860 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.141 0.859 42 H 0.059 0.941 43 H 0.258 0.742 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.891 -6.269 1.354 7.502 hybrid contribution -1.402 0.451 -0.482 1.549 sum 2.489 -5.818 0.872 6.388 Atomic orbital electron populations 1.21716 0.94399 1.02373 1.01678 1.20635 0.96214 0.90276 1.04472 1.20188 0.94959 0.97515 0.91742 1.21103 1.00188 0.94015 0.99010 1.21074 0.95772 0.95217 0.95763 1.20185 1.07627 0.94406 0.95361 1.18522 0.82914 0.85861 0.78060 1.90672 1.26281 1.83086 1.46434 1.48506 1.29927 1.07563 1.47101 1.21698 0.97544 0.79989 1.02209 1.21866 0.95011 1.00131 0.98968 1.21547 0.96761 0.97552 0.98591 1.18877 0.92517 0.91464 0.95041 0.98975 1.21358 1.15098 0.95060 1.26110 0.92960 1.25549 0.98729 0.96222 0.96661 1.69932 1.41482 1.01145 1.40385 0.85741 0.80085 0.77949 0.79227 1.19989 1.20410 1.21190 1.22455 0.82724 1.05112 0.91515 1.18519 0.96786 0.91849 0.83790 1.84695 1.41584 1.69756 1.35356 1.21324 1.02151 0.93751 0.99779 0.90376 0.93496 0.93646 0.89170 0.89274 0.83669 0.85996 0.90466 0.90284 0.88520 0.93399 0.92547 0.92921 0.92712 0.85927 0.94133 0.74166 0.83312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.89 71.98 0.71 -2.38 16 2 C -0.08 -1.61 6.05 29.85 0.18 -1.43 16 3 C -0.04 -1.24 5.14 -19.83 -0.10 -1.34 16 4 C -0.13 -3.90 9.67 22.24 0.22 -3.68 16 5 C -0.06 -2.19 7.43 22.52 0.17 -2.02 16 6 C -0.17 -7.01 4.89 -20.01 -0.10 -7.11 16 7 C 0.56 24.53 6.84 86.69 0.59 25.12 16 8 O -0.58 -28.26 16.21 -1.47 -0.02 -28.29 16 9 N -0.60 -24.94 2.97 -822.64 -2.45 -27.38 16 10 C 0.11 3.83 6.42 86.36 0.55 4.39 16 11 C -0.12 -4.06 6.08 30.67 0.19 -3.87 16 12 C -0.11 -4.13 5.11 30.62 0.16 -3.98 16 13 C 0.04 1.88 2.25 -11.46 -0.03 1.86 16 14 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 15 C -0.54 -27.20 8.57 25.60 0.22 -26.98 16 16 H 0.05 2.65 7.74 -2.91 -0.02 2.62 16 17 C 0.03 1.48 5.30 84.66 0.45 1.93 16 18 N -0.89 -44.77 11.38 21.45 0.24 -44.53 16 19 Si 0.94 40.11 29.54 68.60 2.03 42.13 16 20 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 21 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 23 C 0.10 4.58 4.50 86.36 0.39 4.96 16 24 C 0.14 5.10 6.71 22.85 0.15 5.26 16 25 O -0.50 -18.29 12.72 -87.17 -1.11 -19.40 16 26 C -0.15 -4.71 9.62 22.34 0.21 -4.50 16 27 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.54 8.08 -2.39 -0.02 1.52 16 31 H 0.09 1.51 8.08 -2.38 -0.02 1.49 16 32 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 33 H 0.12 4.42 7.38 -2.91 -0.02 4.40 16 34 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.08 2.86 7.03 -2.39 -0.02 2.84 16 36 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.26 12.66 8.31 -92.71 -0.77 11.89 16 41 H 0.12 5.66 2.85 -2.38 -0.01 5.65 16 42 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.40 11.77 9.06 -74.06 -0.67 11.10 16 44 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -62.94 354.67 2.99 -59.95 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: 0.33 Total: 31.28 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 3.97 Total: -13.77 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -2.20 Total: -71.91 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: -1.13 Total: -47.69 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.13 kcal Total: -62.94 2.99 -59.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906308.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.381 kcal (2) G-P(sol) polarization free energy of solvation -62.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds