Wall clock time and date at job start Tue Mar 31 2020 09:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47145 * 2 1 4 4 O 1.42904 * 109.44491 * 299.96614 * 3 2 1 5 5 C 1.53038 * 109.45891 * 180.02562 * 3 2 1 6 6 C 1.53192 * 109.31335 * 178.61278 * 5 3 2 7 7 N 1.46929 * 108.77604 * 54.62875 * 6 5 3 8 8 C 1.34775 * 120.63083 * 126.11913 * 7 6 5 9 9 O 1.21618 * 119.99918 * 354.59836 * 8 7 6 10 10 C 1.47428 * 120.00467 * 174.60372 * 8 7 6 11 11 C 1.39224 * 120.27989 * 310.76738 * 10 8 7 12 12 C 1.38221 * 120.09419 * 179.97438 * 11 10 8 13 13 C 1.38826 * 120.67414 * 0.02562 * 12 11 10 14 14 C 1.37606 * 120.57044 * 359.97438 * 13 12 11 15 15 C 1.40702 * 119.87771 * 359.74212 * 14 13 12 16 16 C 1.40895 * 120.32327 * 180.25235 * 15 14 13 17 17 H 1.07997 * 119.99979 * 151.71166 * 16 15 14 18 18 C 1.40268 * 119.99885 * 331.71070 * 16 15 14 19 19 N 1.30622 * 120.00666 * 349.14767 * 18 16 15 20 20 Si 1.86809 * 119.99767 * 169.14927 * 18 16 15 21 21 H 1.48496 * 109.46985 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46915 * 119.99926 * 20 18 16 23 23 H 1.48494 * 109.47250 * 239.99929 * 20 18 16 24 24 C 1.46923 * 118.74010 * 306.39798 * 7 6 5 25 25 C 1.53036 * 109.46383 * 59.92962 * 3 2 1 26 26 H 1.08997 * 109.47371 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46631 * 300.00369 * 1 2 3 28 28 H 1.09000 * 109.47261 * 60.00012 * 1 2 3 29 29 H 1.09000 * 109.47150 * 239.99714 * 2 1 3 30 30 H 1.09002 * 109.47038 * 119.99493 * 2 1 3 31 31 H 0.96701 * 113.99898 * 60.03656 * 4 3 2 32 32 H 1.09001 * 109.50324 * 58.65857 * 5 3 2 33 33 H 1.09007 * 109.49172 * 298.56019 * 5 3 2 34 34 H 1.09000 * 109.58619 * 294.84302 * 6 5 3 35 35 H 1.08994 * 109.58763 * 174.42033 * 6 5 3 36 36 H 1.08005 * 119.95374 * 359.97438 * 11 10 8 37 37 H 1.07997 * 119.66148 * 179.97438 * 12 11 10 38 38 H 1.08001 * 119.71376 * 179.97438 * 13 12 11 39 39 H 1.07999 * 120.05385 * 179.97438 * 14 13 12 40 40 H 0.97001 * 120.00570 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.58562 * 173.39471 * 24 7 6 42 42 H 1.09003 * 109.58244 * 293.81746 * 24 7 6 43 43 H 1.08999 * 109.50103 * 301.34308 * 25 3 2 44 44 H 1.09002 * 109.49383 * 61.43460 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 1.5641 2.1154 -1.1674 5 6 3.5704 1.4422 -0.0006 6 6 4.0774 2.8874 -0.0356 7 7 3.4745 3.6272 1.0815 8 6 4.2481 4.2974 1.9583 9 8 5.4594 4.2139 1.8881 10 6 3.6261 5.1318 3.0026 11 6 2.6350 6.0509 2.6690 12 6 2.0540 6.8308 3.6512 13 6 2.4483 6.7101 4.9768 14 6 3.4253 5.8106 5.3373 15 6 4.0283 5.0006 4.3575 16 6 5.0257 4.0727 4.7169 17 1 5.1650 3.1758 4.1317 18 6 5.8379 4.3139 5.8348 19 7 5.8192 5.4837 6.4157 20 14 6.9464 2.9620 6.4931 21 1 6.7833 1.7407 5.6642 22 1 8.3607 3.4117 6.4398 23 1 6.5761 2.6587 7.8988 24 6 2.0126 3.6174 1.2282 25 6 1.5284 2.1643 1.2487 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.6001 2.1538 -1.2337 32 1 3.9339 0.9078 -0.8784 33 1 3.9344 0.9507 0.9017 34 1 3.7908 3.3524 -0.9789 35 1 5.1628 2.8964 0.0635 36 1 2.3196 6.1547 1.6412 37 1 1.2862 7.5418 3.3846 38 1 1.9843 7.3276 5.7317 39 1 3.7259 5.7239 6.3710 40 1 6.3811 5.6506 7.1885 41 1 1.7358 4.1082 2.1612 42 1 1.5576 4.1420 0.3880 43 1 0.4387 2.1437 1.2600 44 1 1.9114 1.6661 2.1394 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601249808.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:31 Heat of formation + Delta-G solvation = -75.357652 kcal Electronic energy + Delta-G solvation = -25793.226554 eV Core-core repulsion = 22288.576700 eV Total energy + Delta-G solvation = -3504.649854 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.04796 -38.45436 -36.79758 -35.01030 -33.73711 -33.02891 -31.49967 -30.12798 -29.89191 -29.24927 -25.81524 -25.08634 -23.21083 -22.66398 -21.18037 -20.89699 -20.08740 -18.58455 -17.29714 -16.55187 -16.42081 -15.56270 -15.20892 -14.97227 -14.61880 -14.41892 -14.37301 -14.16753 -13.61990 -13.38968 -12.81680 -12.70614 -12.64118 -12.43658 -12.11525 -11.99071 -11.77015 -11.65888 -11.57370 -11.18685 -11.15335 -11.11149 -11.01313 -10.97111 -10.77317 -10.47910 -10.15457 -9.91755 -9.76698 -9.64414 -9.28183 -8.63268 -7.97001 -7.50163 -7.44024 -6.80284 -4.43057 2.50339 2.80292 3.07036 3.14300 3.19722 3.69849 3.92692 3.97170 4.21529 4.59405 4.63196 4.72394 4.81882 5.02998 5.22221 5.33356 5.40601 5.55843 5.57810 5.63262 5.69413 5.74182 5.84653 5.88490 5.96396 5.99583 6.07833 6.13421 6.17892 6.22682 6.28269 6.36336 6.48204 6.60276 6.98096 7.11001 7.19531 7.26308 7.46330 7.63777 7.68912 7.89364 7.97661 8.14315 8.27608 8.55931 8.78973 8.85660 9.28011 10.12290 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015082 B = 0.004980 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.028244 B = 5621.093547 C = 6462.279534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.150 4.150 3 C 0.136 3.864 4 O -0.555 6.555 5 C -0.118 4.118 6 C 0.119 3.881 7 N -0.620 5.620 8 C 0.583 3.417 9 O -0.541 6.541 10 C -0.253 4.253 11 C -0.060 4.060 12 C -0.247 4.247 13 C -0.095 4.095 14 C -0.156 4.156 15 C 0.144 3.856 16 C -0.428 4.428 17 H 0.080 0.920 18 C 0.075 3.925 19 N -0.788 5.788 20 Si 0.914 3.086 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.272 1.272 24 C 0.116 3.884 25 C -0.162 4.162 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.370 0.630 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.124 0.876 40 H 0.282 0.718 41 H 0.099 0.901 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.801 -8.284 -8.291 15.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.187 4.187 3 C 0.095 3.905 4 O -0.361 6.361 5 C -0.156 4.156 6 C -0.004 4.004 7 N -0.356 5.356 8 C 0.375 3.625 9 O -0.418 6.418 10 C -0.258 4.258 11 C -0.079 4.079 12 C -0.266 4.266 13 C -0.114 4.114 14 C -0.175 4.175 15 C 0.140 3.860 16 C -0.456 4.456 17 H 0.098 0.902 18 C -0.144 4.144 19 N -0.413 5.413 20 Si 0.738 3.262 21 H -0.183 1.183 22 H -0.197 1.197 23 H -0.197 1.197 24 C -0.008 4.008 25 C -0.201 4.201 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.217 0.783 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.142 0.858 40 H 0.093 0.907 41 H 0.117 0.883 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.352 -8.128 -8.237 14.271 hybrid contribution -0.183 -0.581 0.421 0.741 sum -8.536 -8.709 -7.816 14.484 Atomic orbital electron populations 1.21853 0.95761 1.02040 1.01915 1.22201 0.96372 0.97362 1.02801 1.21168 0.94434 0.90037 0.84855 1.86560 1.26143 1.79549 1.43839 1.21898 0.92710 0.98301 1.02709 1.21312 0.99304 0.90342 0.89481 1.48101 1.06529 1.52228 1.28693 1.18565 0.86144 0.78121 0.79648 1.90673 1.14441 1.64325 1.72333 1.19418 1.07006 1.06103 0.93265 1.20600 0.94644 0.95687 0.96950 1.20268 1.06554 1.06147 0.93664 1.20802 0.97432 0.98078 0.95103 1.21416 0.96971 0.99179 0.99939 1.17399 0.89606 0.90280 0.88673 1.19644 1.12307 1.05776 1.07897 0.90202 1.25983 0.97149 0.95998 0.95250 1.69703 1.33020 1.21029 1.17557 0.86161 0.79658 0.81539 0.78860 1.18318 1.19702 1.19707 1.21643 0.80648 0.95411 1.03085 1.22667 1.00901 0.97726 0.98759 0.92531 0.92027 0.92664 0.91371 0.91054 0.78296 0.90767 0.90353 0.91748 0.89465 0.89032 0.89164 0.89172 0.85790 0.90677 0.88281 0.92177 0.90698 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.25 37.16 0.34 -0.88 16 2 C -0.15 -1.42 5.20 -26.73 -0.14 -1.56 16 3 C 0.14 1.57 0.73 -90.58 -0.07 1.51 16 4 O -0.55 -6.30 11.66 -35.23 -0.41 -6.72 16 5 C -0.12 -1.59 5.11 -26.61 -0.14 -1.73 16 6 C 0.12 1.96 6.20 -3.71 -0.02 1.94 16 7 N -0.62 -11.69 2.97 -174.04 -0.52 -12.20 16 8 C 0.58 13.86 6.49 -12.52 -0.08 13.77 16 9 O -0.54 -14.72 15.26 5.26 0.08 -14.64 16 10 C -0.25 -6.22 4.84 -104.37 -0.51 -6.72 16 11 C -0.06 -1.31 7.56 -39.22 -0.30 -1.60 16 12 C -0.25 -5.27 10.03 -39.37 -0.39 -5.66 16 13 C -0.10 -2.15 10.01 -39.59 -0.40 -2.55 16 14 C -0.16 -3.95 8.66 -38.88 -0.34 -4.28 16 15 C 0.14 3.84 5.58 -106.54 -0.59 3.25 16 16 C -0.43 -11.66 7.91 -37.81 -0.30 -11.95 16 17 H 0.08 2.23 7.02 -52.49 -0.37 1.86 16 18 C 0.07 1.92 5.26 -17.30 -0.09 1.83 16 19 N -0.79 -20.42 10.81 55.56 0.60 -19.82 16 20 Si 0.91 19.40 29.58 -169.99 -5.03 14.37 16 21 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 C 0.12 1.80 5.07 -3.72 -0.02 1.78 16 25 C -0.16 -2.04 4.77 -26.62 -0.13 -2.17 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.48 6.40 -51.93 -0.33 0.15 16 28 H 0.05 0.37 6.78 -51.93 -0.35 0.02 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.37 2.98 7.33 45.56 0.33 3.31 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.02 7.81 -51.93 -0.41 0.62 16 35 H 0.09 1.59 6.99 -51.93 -0.36 1.23 16 36 H 0.09 1.78 7.39 -52.48 -0.39 1.39 16 37 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.12 3.22 6.18 -52.49 -0.32 2.89 16 40 H 0.28 6.60 8.29 -40.82 -0.34 6.26 16 41 H 0.10 1.72 5.16 -51.93 -0.27 1.45 16 42 H 0.06 0.86 7.81 -51.93 -0.41 0.46 16 43 H 0.07 0.76 6.36 -51.93 -0.33 0.43 16 44 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 342.78 15.07 5.17 5.17 Total: -1.00 -30.51 342.78 -8.99 -39.50 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -5.72 Total: 9.38 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -3.16 Total: -15.04 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: 0.08 Total: -32.03 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.33 Total: -21.36 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.51 -8.99 -39.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601249808.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.860 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds