Wall clock time and date at job start Tue Mar 31 2020 09:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47145 * 2 1 4 4 O 1.42904 * 109.44491 * 299.96614 * 3 2 1 5 5 C 1.53038 * 109.45891 * 180.02562 * 3 2 1 6 6 C 1.53192 * 109.31335 * 178.61278 * 5 3 2 7 7 N 1.46929 * 108.77604 * 54.62875 * 6 5 3 8 8 C 1.34775 * 120.63083 * 126.11913 * 7 6 5 9 9 O 1.21618 * 119.99918 * 354.59836 * 8 7 6 10 10 C 1.47428 * 120.00467 * 174.60372 * 8 7 6 11 11 C 1.39224 * 120.27989 * 310.76738 * 10 8 7 12 12 C 1.38221 * 120.09419 * 179.97438 * 11 10 8 13 13 C 1.38826 * 120.67414 * 0.02562 * 12 11 10 14 14 C 1.37606 * 120.57044 * 359.97438 * 13 12 11 15 15 C 1.40702 * 119.87771 * 359.74212 * 14 13 12 16 16 C 1.40895 * 120.32327 * 180.25235 * 15 14 13 17 17 H 1.07997 * 119.99979 * 151.71166 * 16 15 14 18 18 C 1.40268 * 119.99885 * 331.71070 * 16 15 14 19 19 N 1.30622 * 120.00666 * 349.14767 * 18 16 15 20 20 Si 1.86809 * 119.99767 * 169.14927 * 18 16 15 21 21 H 1.48496 * 109.46985 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46915 * 119.99926 * 20 18 16 23 23 H 1.48494 * 109.47250 * 239.99929 * 20 18 16 24 24 C 1.46923 * 118.74010 * 306.39798 * 7 6 5 25 25 C 1.53036 * 109.46383 * 59.92962 * 3 2 1 26 26 H 1.08997 * 109.47371 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46631 * 300.00369 * 1 2 3 28 28 H 1.09000 * 109.47261 * 60.00012 * 1 2 3 29 29 H 1.09000 * 109.47150 * 239.99714 * 2 1 3 30 30 H 1.09002 * 109.47038 * 119.99493 * 2 1 3 31 31 H 0.96701 * 113.99898 * 60.03656 * 4 3 2 32 32 H 1.09001 * 109.50324 * 58.65857 * 5 3 2 33 33 H 1.09007 * 109.49172 * 298.56019 * 5 3 2 34 34 H 1.09000 * 109.58619 * 294.84302 * 6 5 3 35 35 H 1.08994 * 109.58763 * 174.42033 * 6 5 3 36 36 H 1.08005 * 119.95374 * 359.97438 * 11 10 8 37 37 H 1.07997 * 119.66148 * 179.97438 * 12 11 10 38 38 H 1.08001 * 119.71376 * 179.97438 * 13 12 11 39 39 H 1.07999 * 120.05385 * 179.97438 * 14 13 12 40 40 H 0.97001 * 120.00570 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.58562 * 173.39471 * 24 7 6 42 42 H 1.09003 * 109.58244 * 293.81746 * 24 7 6 43 43 H 1.08999 * 109.50103 * 301.34308 * 25 3 2 44 44 H 1.09002 * 109.49383 * 61.43460 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 1.5641 2.1154 -1.1674 5 6 3.5704 1.4422 -0.0006 6 6 4.0774 2.8874 -0.0356 7 7 3.4745 3.6272 1.0815 8 6 4.2481 4.2974 1.9583 9 8 5.4594 4.2139 1.8881 10 6 3.6261 5.1318 3.0026 11 6 2.6350 6.0509 2.6690 12 6 2.0540 6.8308 3.6512 13 6 2.4483 6.7101 4.9768 14 6 3.4253 5.8106 5.3373 15 6 4.0283 5.0006 4.3575 16 6 5.0257 4.0727 4.7169 17 1 5.1650 3.1758 4.1317 18 6 5.8379 4.3139 5.8348 19 7 5.8192 5.4837 6.4157 20 14 6.9464 2.9620 6.4931 21 1 6.7833 1.7407 5.6642 22 1 8.3607 3.4117 6.4398 23 1 6.5761 2.6587 7.8988 24 6 2.0126 3.6174 1.2282 25 6 1.5284 2.1643 1.2487 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.6001 2.1538 -1.2337 32 1 3.9339 0.9078 -0.8784 33 1 3.9344 0.9507 0.9017 34 1 3.7908 3.3524 -0.9789 35 1 5.1628 2.8964 0.0635 36 1 2.3196 6.1547 1.6412 37 1 1.2862 7.5418 3.3846 38 1 1.9843 7.3276 5.7317 39 1 3.7259 5.7239 6.3710 40 1 6.3811 5.6506 7.1885 41 1 1.7358 4.1082 2.1612 42 1 1.5576 4.1420 0.3880 43 1 0.4387 2.1437 1.2600 44 1 1.9114 1.6661 2.1394 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601249808.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:30 Heat of formation + Delta-G solvation = -94.479177 kcal Electronic energy + Delta-G solvation = -25794.055726 eV Core-core repulsion = 22288.576700 eV Total energy + Delta-G solvation = -3505.479026 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.42651 -39.89669 -38.56455 -36.47492 -35.59650 -33.89388 -32.85018 -31.75252 -31.32222 -30.85773 -27.49960 -26.46644 -24.44561 -24.10339 -22.82224 -22.37652 -21.23749 -20.12034 -19.15163 -18.10550 -17.47930 -17.27675 -16.88284 -16.22327 -16.06014 -15.78433 -15.52026 -15.29717 -15.13813 -14.91430 -14.47837 -14.28440 -14.10849 -13.54726 -13.49715 -13.41018 -13.21097 -12.95336 -12.83689 -12.76066 -12.66083 -12.48339 -12.24666 -12.21672 -12.08803 -11.85611 -11.76540 -11.50473 -11.19357 -11.15417 -10.71488 -10.46528 -9.55568 -9.31117 -9.29747 -8.68572 -6.41446 0.65141 1.00194 1.30438 1.44969 1.46055 2.03567 2.16533 2.29994 2.70961 3.31993 3.64994 3.69513 3.72132 3.86022 4.06670 4.16428 4.31244 4.36492 4.38958 4.51005 4.54405 4.59435 4.61324 4.67953 4.82933 4.85040 4.89346 5.01444 5.01961 5.05082 5.07670 5.16919 5.17713 5.24399 5.34769 5.37934 5.47806 5.58023 5.76831 5.86738 6.01647 6.11017 6.28343 6.53244 6.66722 6.86572 6.93558 6.94252 7.49142 8.26415 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015082 B = 0.004980 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.028244 B = 5621.093547 C = 6462.279534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.144 4.144 3 C 0.145 3.855 4 O -0.562 6.562 5 C -0.117 4.117 6 C 0.116 3.884 7 N -0.611 5.611 8 C 0.574 3.426 9 O -0.592 6.592 10 C -0.268 4.268 11 C -0.057 4.057 12 C -0.233 4.233 13 C -0.093 4.093 14 C -0.181 4.181 15 C 0.114 3.886 16 C -0.465 4.465 17 H 0.055 0.945 18 C 0.036 3.964 19 N -0.818 5.818 20 Si 0.977 3.023 21 H -0.269 1.269 22 H -0.267 1.267 23 H -0.250 1.250 24 C 0.110 3.890 25 C -0.156 4.156 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.387 0.613 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.120 0.880 37 H 0.131 0.869 38 H 0.120 0.880 39 H 0.109 0.891 40 H 0.291 0.709 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.108 0.892 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.487 -8.537 -9.566 17.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.182 4.182 3 C 0.104 3.896 4 O -0.371 6.371 5 C -0.155 4.155 6 C -0.006 4.006 7 N -0.345 5.345 8 C 0.367 3.633 9 O -0.473 6.473 10 C -0.272 4.272 11 C -0.075 4.075 12 C -0.252 4.252 13 C -0.111 4.111 14 C -0.200 4.200 15 C 0.110 3.890 16 C -0.495 4.495 17 H 0.073 0.927 18 C -0.180 4.180 19 N -0.444 5.444 20 Si 0.798 3.202 21 H -0.193 1.193 22 H -0.192 1.192 23 H -0.173 1.173 24 C -0.012 4.012 25 C -0.195 4.195 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.237 0.763 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.138 0.862 39 H 0.127 0.873 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.126 0.874 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.116 -8.387 -9.535 16.877 hybrid contribution 0.493 -0.401 0.659 0.916 sum -10.623 -8.788 -8.877 16.397 Atomic orbital electron populations 1.21850 0.93982 1.02866 1.02648 1.22128 0.97868 0.95442 1.02770 1.20968 0.92732 0.91395 0.84491 1.86525 1.27931 1.79507 1.43148 1.21879 0.94744 0.95906 1.02935 1.21440 0.97942 0.92295 0.88924 1.48109 1.07851 1.50667 1.27826 1.18648 0.85800 0.78573 0.80318 1.90630 1.16523 1.66242 1.73895 1.19706 1.07638 1.06986 0.92896 1.20892 0.93524 0.94466 0.98637 1.20743 1.06208 1.05520 0.92757 1.21159 0.96181 0.97105 0.96695 1.21377 0.98667 1.00828 0.99144 1.17741 0.90117 0.91018 0.90098 1.19618 1.14429 1.05941 1.09471 0.92672 1.26699 0.98102 0.98136 0.95023 1.69727 1.34170 1.22199 1.18289 0.85239 0.77796 0.78213 0.78948 1.19328 1.19223 1.17350 1.21863 0.78425 0.97828 1.03053 1.22649 1.02821 0.95369 0.98633 0.91790 0.91993 0.91151 0.90890 0.91697 0.76267 0.88876 0.91784 0.90387 0.92090 0.86226 0.85091 0.86195 0.87305 0.89848 0.90018 0.89854 0.87373 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.25 71.98 0.67 -1.19 16 2 C -0.14 -2.36 5.20 30.60 0.16 -2.20 16 3 C 0.14 3.02 0.73 -10.77 -0.01 3.01 16 4 O -0.56 -10.75 11.66 -148.98 -1.74 -12.49 16 5 C -0.12 -3.07 5.11 30.67 0.16 -2.92 16 6 C 0.12 3.87 6.20 86.36 0.54 4.41 16 7 N -0.61 -23.24 2.97 -822.78 -2.45 -25.69 16 8 C 0.57 28.41 6.49 86.66 0.56 28.97 16 9 O -0.59 -34.26 15.26 -4.09 -0.06 -34.32 16 10 C -0.27 -13.45 4.84 -19.70 -0.10 -13.55 16 11 C -0.06 -2.38 7.56 22.50 0.17 -2.21 16 12 C -0.23 -9.28 10.03 22.41 0.22 -9.05 16 13 C -0.09 -4.06 10.01 22.26 0.22 -3.83 16 14 C -0.18 -9.38 8.66 22.72 0.20 -9.18 16 15 C 0.11 6.32 5.58 -21.11 -0.12 6.20 16 16 C -0.47 -27.00 7.91 23.41 0.19 -26.82 16 17 H 0.06 3.34 7.02 -2.91 -0.02 3.32 16 18 C 0.04 1.91 5.26 85.37 0.45 2.36 16 19 N -0.82 -44.06 10.81 21.88 0.24 -43.83 16 20 Si 0.98 41.47 29.58 68.60 2.03 43.50 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 23 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 24 C 0.11 3.27 5.07 86.36 0.44 3.71 16 25 C -0.16 -3.64 4.77 30.67 0.15 -3.50 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.74 6.40 -2.39 -0.02 0.72 16 28 H 0.07 0.63 6.78 -2.39 -0.02 0.61 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.39 4.48 7.33 -74.06 -0.54 3.93 16 32 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.08 2.39 7.81 -2.39 -0.02 2.37 16 35 H 0.06 2.34 6.99 -2.39 -0.02 2.33 16 36 H 0.12 4.30 7.39 -2.91 -0.02 4.28 16 37 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 38 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 39 H 0.11 5.89 6.18 -2.91 -0.02 5.87 16 40 H 0.29 14.02 8.29 -92.71 -0.77 13.25 16 41 H 0.08 2.74 5.16 -2.39 -0.01 2.73 16 42 H 0.08 2.12 7.81 -2.39 -0.02 2.10 16 43 H 0.11 1.82 6.36 -2.39 -0.02 1.80 16 44 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -70.78 342.78 2.38 -68.40 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: 0.47 Total: 30.19 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 3.89 Total: -25.76 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: -2.21 Total: -69.51 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -1.80 Total: -46.81 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -70.78 2.38 -68.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601249808.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.081 kcal (2) G-P(sol) polarization free energy of solvation -70.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds