Wall clock time and date at job start Tue Mar 31 2020 07:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99832 * 2 1 4 4 H 1.08994 * 112.85196 * 338.30520 * 3 2 1 5 5 C 1.53786 * 113.61365 * 109.50207 * 3 2 1 6 6 C 1.53789 * 87.08085 * 89.11511 * 5 3 2 7 7 H 1.08994 * 113.61411 * 140.06473 * 6 5 3 8 8 N 1.46496 * 113.61624 * 270.88723 * 6 5 3 9 9 C 1.34777 * 119.99637 * 254.13748 * 8 6 5 10 10 O 1.21610 * 120.00083 * 359.97438 * 9 8 6 11 11 C 1.47435 * 119.99766 * 179.97438 * 9 8 6 12 12 C 1.39232 * 120.28401 * 357.32635 * 11 9 8 13 13 C 1.38216 * 120.09011 * 180.23471 * 12 11 9 14 14 C 1.38827 * 120.68013 * 359.78304 * 13 12 11 15 15 C 1.37601 * 120.56804 * 359.95420 * 14 13 12 16 16 C 1.40704 * 119.87971 * 0.02562 * 15 14 13 17 17 C 1.40894 * 120.32560 * 179.97438 * 16 15 14 18 18 H 1.07994 * 119.99798 * 145.89833 * 17 16 15 19 19 C 1.40270 * 120.00051 * 325.89952 * 17 16 15 20 20 N 1.30630 * 120.00195 * 341.10233 * 19 17 16 21 21 Si 1.86799 * 120.00355 * 161.10137 * 19 17 16 22 22 H 1.48495 * 109.47091 * 270.00222 * 21 19 17 23 23 H 1.48506 * 109.47009 * 29.99660 * 21 19 17 24 24 H 1.48500 * 109.47400 * 149.99913 * 21 19 17 25 25 C 1.53781 * 87.17002 * 25.47350 * 6 5 3 26 26 C 1.53007 * 113.61537 * 89.07460 * 25 6 5 27 27 C 1.53004 * 113.61751 * 219.97445 * 25 6 5 28 28 H 1.08995 * 109.46855 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46905 * 300.00274 * 1 2 3 30 30 H 1.09007 * 109.47115 * 59.99945 * 1 2 3 31 31 H 1.08993 * 113.61681 * 334.57110 * 5 3 2 32 32 H 1.08999 * 113.61959 * 203.66105 * 5 3 2 33 33 H 0.96999 * 120.00501 * 74.12976 * 8 6 5 34 34 H 1.07998 * 119.94909 * 359.97438 * 12 11 9 35 35 H 1.07999 * 119.66104 * 179.75908 * 13 12 11 36 36 H 1.07997 * 119.71644 * 179.97438 * 14 13 12 37 37 H 1.08002 * 120.05577 * 180.02562 * 15 14 13 38 38 H 0.97002 * 119.99919 * 354.71387 * 20 19 17 39 39 H 1.09001 * 109.46646 * 59.99458 * 26 25 6 40 40 H 1.09002 * 109.47410 * 179.97438 * 26 25 6 41 41 H 1.09001 * 109.47305 * 300.00156 * 26 25 6 42 42 H 1.09003 * 109.46456 * 60.00220 * 27 25 6 43 43 H 1.08997 * 109.47249 * 179.97438 * 27 25 6 44 44 H 1.08999 * 109.46637 * 300.00381 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3298 2.0717 -0.3713 5 6 2.6905 1.6769 1.3282 6 6 3.9724 1.0481 0.7569 7 1 4.8771 1.6064 0.9971 8 7 4.0975 -0.3848 1.0349 9 6 4.9738 -0.8171 1.9632 10 8 5.6609 -0.0177 2.5697 11 6 5.0993 -2.2591 2.2434 12 6 4.2768 -3.1750 1.5928 13 6 4.3946 -4.5255 1.8622 14 6 5.3321 -4.9863 2.7764 15 6 6.1627 -4.1060 3.4311 16 6 6.0634 -2.7260 3.1747 17 6 6.9087 -1.8162 3.8401 18 1 7.2504 -0.9264 3.3325 19 6 7.3064 -2.0662 5.1618 20 7 6.6323 -2.9084 5.8985 21 14 8.8001 -1.1950 5.8684 22 1 10.0153 -2.0088 5.6114 23 1 8.9490 0.1343 5.2233 24 1 8.6234 -1.0179 7.3322 25 6 3.4102 1.3576 -0.6406 26 6 3.7941 2.7438 -1.1625 27 6 3.6608 0.2464 -1.6621 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.2885 1.1428 2.1891 32 1 2.7677 2.7515 1.4939 33 1 3.5496 -1.0224 0.5510 34 1 3.5429 -2.8292 0.8799 35 1 3.7504 -5.2295 1.3564 36 1 5.4105 -6.0449 2.9753 37 1 6.8894 -4.4736 4.1405 38 1 5.8136 -3.3025 5.5589 39 1 4.8796 2.8209 -1.2241 40 1 3.3629 2.8915 -2.1527 41 1 3.4137 3.5062 -0.4827 42 1 3.1904 -0.6751 -1.3190 43 1 3.2363 0.5344 -2.6238 44 1 4.7337 0.0881 -1.7707 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601299640.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:02 Heat of formation + Delta-G solvation = -46.662403 kcal Electronic energy + Delta-G solvation = -25540.668430 eV Core-core repulsion = 22037.262895 eV Total energy + Delta-G solvation = -3503.405535 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 3.33 seconds Orbital eigenvalues (eV) -40.57478 -38.53350 -36.87950 -36.15278 -33.97421 -32.57757 -30.56213 -29.76219 -29.20824 -27.61486 -26.57452 -25.32048 -24.21662 -22.56317 -21.97579 -20.86247 -19.38225 -18.73553 -17.83990 -16.79218 -16.04939 -15.55621 -15.38120 -15.18497 -14.68481 -14.27090 -14.13018 -13.81159 -13.70532 -13.40679 -13.25947 -13.00413 -12.72558 -12.47213 -12.22881 -12.18073 -11.90963 -11.81684 -11.56671 -11.44466 -11.09941 -10.87930 -10.83599 -10.68414 -10.49774 -10.33973 -10.12521 -9.92935 -9.54649 -9.44120 -9.03354 -8.42866 -8.21627 -7.72666 -7.54536 -7.08270 -4.40466 2.30756 2.78916 3.22850 3.34628 3.44871 3.47084 3.99756 4.08045 4.10883 4.54341 4.56187 4.69194 4.94604 4.97922 5.15814 5.19118 5.26028 5.33701 5.53480 5.54944 5.58883 5.63497 5.72808 5.83896 5.88691 5.92915 5.96649 6.04040 6.12705 6.19481 6.25365 6.36034 6.42188 6.62733 6.78260 7.05320 7.15586 7.31344 7.36409 7.56036 7.67960 7.78772 7.95453 8.16701 8.28180 8.52785 8.80124 8.92787 9.47290 10.09699 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016087 B = 0.004671 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.124417 B = 5993.569045 C = 6999.654191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.364 6.364 3 C 0.072 3.928 4 H 0.070 0.930 5 C -0.179 4.179 6 C 0.147 3.853 7 H 0.096 0.904 8 N -0.721 5.721 9 C 0.565 3.435 10 O -0.540 6.540 11 C -0.263 4.263 12 C -0.042 4.042 13 C -0.260 4.260 14 C -0.076 4.076 15 C -0.202 4.202 16 C 0.121 3.879 17 C -0.467 4.467 18 H 0.106 0.894 19 C 0.031 3.969 20 N -0.797 5.797 21 Si 1.073 2.927 22 H -0.275 1.275 23 H -0.273 1.273 24 H -0.277 1.277 25 C -0.096 4.096 26 C -0.123 4.123 27 C -0.130 4.130 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.398 0.602 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.298 0.702 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.051 0.949 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.948 7.398 -11.447 16.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.282 6.282 3 C 0.014 3.986 4 H 0.088 0.912 5 C -0.218 4.218 6 C 0.040 3.960 7 H 0.114 0.886 8 N -0.376 5.376 9 C 0.359 3.641 10 O -0.419 6.419 11 C -0.267 4.267 12 C -0.061 4.061 13 C -0.279 4.279 14 C -0.095 4.095 15 C -0.222 4.222 16 C 0.117 3.883 17 C -0.494 4.494 18 H 0.124 0.876 19 C -0.190 4.190 20 N -0.420 5.420 21 Si 0.896 3.104 22 H -0.201 1.201 23 H -0.198 1.198 24 H -0.202 1.202 25 C -0.097 4.097 26 C -0.181 4.181 27 C -0.188 4.188 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.235 0.765 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.399 7.867 -9.606 14.454 hybrid contribution -1.804 -0.380 -1.588 2.433 sum -9.203 7.487 -11.194 16.311 Atomic orbital electron populations 1.22771 0.81105 1.02746 0.99675 1.87833 1.19425 1.26481 1.94467 1.23277 0.93832 0.84866 0.96661 0.91225 1.23967 0.98558 1.01157 0.98092 1.21572 0.97600 0.83973 0.92895 0.88604 1.45694 1.43373 1.05895 1.42590 1.18390 0.78382 0.89136 0.78225 1.90660 1.44935 1.56889 1.49404 1.19409 1.04905 0.90471 1.11961 1.20748 0.95853 0.93425 0.96054 1.20236 1.05939 0.94674 1.07073 1.20736 0.95417 0.97505 0.95810 1.21243 1.02758 0.93190 1.04965 1.17514 0.88717 0.91867 0.90236 1.21212 1.21445 1.07728 0.99040 0.87622 1.27251 1.02224 0.94918 0.94655 1.70357 1.13404 1.19090 1.39174 0.83522 0.73888 0.76610 0.76336 1.20106 1.19775 1.20219 1.22548 0.94628 0.96904 0.95653 1.21532 1.02143 0.93779 1.00642 1.21518 1.01724 0.98293 0.97224 0.89581 0.94122 0.94262 0.90391 0.88959 0.76502 0.89022 0.88969 0.88958 0.87572 0.88804 0.91498 0.92165 0.92167 0.91442 0.93011 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.86 101.05 1.10 1.42 16 2 O -0.36 -4.68 7.97 -35.23 -0.28 -4.96 16 3 C 0.07 0.86 3.78 -25.77 -0.10 0.76 16 4 H 0.07 0.69 7.86 -51.93 -0.41 0.28 16 5 C -0.18 -2.47 7.36 -25.91 -0.19 -2.66 16 6 C 0.15 2.35 3.75 -67.12 -0.25 2.10 16 7 H 0.10 1.70 7.46 -51.93 -0.39 1.31 16 8 N -0.72 -13.66 4.62 -54.09 -0.25 -13.91 16 9 C 0.56 13.56 7.73 -12.52 -0.10 13.46 16 10 O -0.54 -14.62 13.17 5.27 0.07 -14.55 16 11 C -0.26 -6.59 5.92 -104.36 -0.62 -7.21 16 12 C -0.04 -0.92 9.53 -39.22 -0.37 -1.30 16 13 C -0.26 -5.62 10.03 -39.37 -0.39 -6.02 16 14 C -0.08 -1.72 10.01 -39.60 -0.40 -2.11 16 15 C -0.20 -5.16 7.85 -38.88 -0.31 -5.46 16 16 C 0.12 3.30 5.18 -106.54 -0.55 2.75 16 17 C -0.47 -13.10 7.67 -37.81 -0.29 -13.39 16 18 H 0.11 3.10 5.90 -52.49 -0.31 2.79 16 19 C 0.03 0.82 5.05 -17.30 -0.09 0.73 16 20 N -0.80 -21.74 12.56 55.56 0.70 -21.05 16 21 Si 1.07 23.02 29.98 -169.99 -5.10 17.92 16 22 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 25 C -0.10 -1.17 1.34 -153.55 -0.21 -1.38 16 26 C -0.12 -1.19 9.08 37.16 0.34 -0.85 16 27 C -0.13 -1.60 8.44 37.16 0.31 -1.29 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.09 1.08 7.66 -51.93 -0.40 0.68 16 33 H 0.40 7.03 4.12 -40.82 -0.17 6.87 16 34 H 0.09 1.75 6.40 -52.49 -0.34 1.41 16 35 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 37 H 0.11 2.75 6.92 -52.49 -0.36 2.39 16 38 H 0.30 8.34 6.52 -40.82 -0.27 8.07 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.52 7.34 -51.93 -0.38 0.14 16 42 H 0.07 0.90 5.66 -51.93 -0.29 0.61 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 350.30 15.07 5.28 5.28 Total: -1.00 -30.65 350.30 -8.03 -38.68 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -6.34 Total: 13.05 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -2.11 Total: -20.46 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.45 Total: -34.96 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.21 Total: -19.51 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.10 Total: 17.92 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.65 -8.03 -38.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601299640.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.981 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.33 seconds