Wall clock time and date at job start Tue Mar 31 2020 07:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99832 * 2 1 4 4 H 1.08994 * 112.85196 * 338.30520 * 3 2 1 5 5 C 1.53786 * 113.61365 * 109.50207 * 3 2 1 6 6 C 1.53789 * 87.08085 * 89.11511 * 5 3 2 7 7 H 1.08994 * 113.61411 * 140.06473 * 6 5 3 8 8 N 1.46496 * 113.61624 * 270.88723 * 6 5 3 9 9 C 1.34777 * 119.99637 * 254.13748 * 8 6 5 10 10 O 1.21610 * 120.00083 * 359.97438 * 9 8 6 11 11 C 1.47435 * 119.99766 * 179.97438 * 9 8 6 12 12 C 1.39232 * 120.28401 * 357.32635 * 11 9 8 13 13 C 1.38216 * 120.09011 * 180.23471 * 12 11 9 14 14 C 1.38827 * 120.68013 * 359.78304 * 13 12 11 15 15 C 1.37601 * 120.56804 * 359.95420 * 14 13 12 16 16 C 1.40704 * 119.87971 * 0.02562 * 15 14 13 17 17 C 1.40894 * 120.32560 * 179.97438 * 16 15 14 18 18 H 1.07994 * 119.99798 * 145.89833 * 17 16 15 19 19 C 1.40270 * 120.00051 * 325.89952 * 17 16 15 20 20 N 1.30630 * 120.00195 * 341.10233 * 19 17 16 21 21 Si 1.86799 * 120.00355 * 161.10137 * 19 17 16 22 22 H 1.48495 * 109.47091 * 270.00222 * 21 19 17 23 23 H 1.48506 * 109.47009 * 29.99660 * 21 19 17 24 24 H 1.48500 * 109.47400 * 149.99913 * 21 19 17 25 25 C 1.53781 * 87.17002 * 25.47350 * 6 5 3 26 26 C 1.53007 * 113.61537 * 89.07460 * 25 6 5 27 27 C 1.53004 * 113.61751 * 219.97445 * 25 6 5 28 28 H 1.08995 * 109.46855 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46905 * 300.00274 * 1 2 3 30 30 H 1.09007 * 109.47115 * 59.99945 * 1 2 3 31 31 H 1.08993 * 113.61681 * 334.57110 * 5 3 2 32 32 H 1.08999 * 113.61959 * 203.66105 * 5 3 2 33 33 H 0.96999 * 120.00501 * 74.12976 * 8 6 5 34 34 H 1.07998 * 119.94909 * 359.97438 * 12 11 9 35 35 H 1.07999 * 119.66104 * 179.75908 * 13 12 11 36 36 H 1.07997 * 119.71644 * 179.97438 * 14 13 12 37 37 H 1.08002 * 120.05577 * 180.02562 * 15 14 13 38 38 H 0.97002 * 119.99919 * 354.71387 * 20 19 17 39 39 H 1.09001 * 109.46646 * 59.99458 * 26 25 6 40 40 H 1.09002 * 109.47410 * 179.97438 * 26 25 6 41 41 H 1.09001 * 109.47305 * 300.00156 * 26 25 6 42 42 H 1.09003 * 109.46456 * 60.00220 * 27 25 6 43 43 H 1.08997 * 109.47249 * 179.97438 * 27 25 6 44 44 H 1.08999 * 109.46637 * 300.00381 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3298 2.0717 -0.3713 5 6 2.6905 1.6769 1.3282 6 6 3.9724 1.0481 0.7569 7 1 4.8771 1.6064 0.9971 8 7 4.0975 -0.3848 1.0349 9 6 4.9738 -0.8171 1.9632 10 8 5.6609 -0.0177 2.5697 11 6 5.0993 -2.2591 2.2434 12 6 4.2768 -3.1750 1.5928 13 6 4.3946 -4.5255 1.8622 14 6 5.3321 -4.9863 2.7764 15 6 6.1627 -4.1060 3.4311 16 6 6.0634 -2.7260 3.1747 17 6 6.9087 -1.8162 3.8401 18 1 7.2504 -0.9264 3.3325 19 6 7.3064 -2.0662 5.1618 20 7 6.6323 -2.9084 5.8985 21 14 8.8001 -1.1950 5.8684 22 1 10.0153 -2.0088 5.6114 23 1 8.9490 0.1343 5.2233 24 1 8.6234 -1.0179 7.3322 25 6 3.4102 1.3576 -0.6406 26 6 3.7941 2.7438 -1.1625 27 6 3.6608 0.2464 -1.6621 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.2885 1.1428 2.1891 32 1 2.7677 2.7515 1.4939 33 1 3.5496 -1.0224 0.5510 34 1 3.5429 -2.8292 0.8799 35 1 3.7504 -5.2295 1.3564 36 1 5.4105 -6.0449 2.9753 37 1 6.8894 -4.4736 4.1405 38 1 5.8136 -3.3025 5.5589 39 1 4.8796 2.8209 -1.2241 40 1 3.3629 2.8915 -2.1527 41 1 3.4137 3.5062 -0.4827 42 1 3.1904 -0.6751 -1.3190 43 1 3.2363 0.5344 -2.6238 44 1 4.7337 0.0881 -1.7707 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601299640.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:59 Heat of formation + Delta-G solvation = -64.859481 kcal Electronic energy + Delta-G solvation = -25541.457514 eV Core-core repulsion = 22037.262895 eV Total energy + Delta-G solvation = -3504.194619 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 2.98 seconds Orbital eigenvalues (eV) -41.78212 -40.28100 -38.60762 -37.27827 -35.89603 -34.22659 -31.91544 -31.41319 -31.00256 -28.45354 -27.55900 -27.07674 -25.58839 -23.95990 -23.36891 -22.73052 -21.14263 -20.23713 -19.45513 -18.19448 -17.31316 -16.89732 -16.53170 -16.47255 -16.15406 -16.00810 -15.79261 -15.47344 -15.37331 -14.67473 -14.57316 -14.25697 -14.07473 -13.88969 -13.75042 -13.47247 -13.08524 -13.01065 -12.90278 -12.71494 -12.53753 -12.48449 -12.38879 -12.06102 -11.95355 -11.80735 -11.58109 -11.45691 -11.00812 -10.96142 -10.38904 -10.33719 -9.86477 -9.59788 -9.50267 -9.09634 -6.46669 0.39656 0.89413 1.45149 1.61557 1.76533 2.24722 2.30537 2.34467 2.73573 2.75388 3.45198 3.52522 3.58000 3.87383 4.01249 4.18743 4.24550 4.27198 4.34331 4.43221 4.54384 4.59629 4.61999 4.69879 4.74908 4.78785 4.87256 4.88528 4.90106 4.94276 5.00229 5.10097 5.13017 5.15609 5.37874 5.42486 5.45426 5.63780 5.69204 5.75862 5.90343 5.97940 6.20527 6.32267 6.32880 6.72239 6.86061 6.96037 7.64686 8.03819 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016087 B = 0.004671 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.124417 B = 5993.569045 C = 6999.654191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.388 6.388 3 C 0.084 3.916 4 H 0.103 0.897 5 C -0.177 4.177 6 C 0.118 3.882 7 H 0.069 0.931 8 N -0.701 5.701 9 C 0.557 3.443 10 O -0.582 6.582 11 C -0.282 4.282 12 C -0.042 4.042 13 C -0.243 4.243 14 C -0.071 4.071 15 C -0.225 4.225 16 C 0.096 3.904 17 C -0.510 4.510 18 H 0.080 0.920 19 C -0.003 4.003 20 N -0.818 5.818 21 Si 1.119 2.881 22 H -0.254 1.254 23 H -0.276 1.276 24 H -0.267 1.267 25 C -0.082 4.082 26 C -0.122 4.122 27 C -0.130 4.130 28 H 0.092 0.908 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.115 0.885 33 H 0.406 0.594 34 H 0.125 0.875 35 H 0.136 0.864 36 H 0.127 0.873 37 H 0.091 0.909 38 H 0.282 0.718 39 H 0.059 0.941 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.077 0.923 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.142 7.416 -13.897 19.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.307 6.307 3 C 0.026 3.974 4 H 0.121 0.879 5 C -0.216 4.216 6 C 0.012 3.988 7 H 0.087 0.913 8 N -0.354 5.354 9 C 0.350 3.650 10 O -0.464 6.464 11 C -0.287 4.287 12 C -0.061 4.061 13 C -0.262 4.262 14 C -0.090 4.090 15 C -0.244 4.244 16 C 0.092 3.908 17 C -0.538 4.538 18 H 0.098 0.902 19 C -0.218 4.218 20 N -0.442 5.442 21 Si 0.936 3.064 22 H -0.178 1.178 23 H -0.201 1.201 24 H -0.191 1.191 25 C -0.083 4.083 26 C -0.179 4.179 27 C -0.187 4.187 28 H 0.111 0.889 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.133 0.867 33 H 0.244 0.756 34 H 0.143 0.857 35 H 0.154 0.846 36 H 0.144 0.856 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.644 7.871 -12.105 17.364 hybrid contribution -1.327 -0.457 -1.034 1.743 sum -10.971 7.414 -13.139 18.654 Atomic orbital electron populations 1.22960 0.79417 1.03667 1.00798 1.87796 1.21357 1.27078 1.94451 1.23221 0.94135 0.85498 0.94548 0.87883 1.24001 0.97185 1.02007 0.98370 1.21965 0.97808 0.81877 0.97109 0.91282 1.45455 1.41610 1.07678 1.40700 1.18467 0.78913 0.88784 0.78830 1.90634 1.46776 1.57693 1.51274 1.19821 1.05082 0.91951 1.11875 1.21096 0.95575 0.93439 0.95966 1.20786 1.04891 0.95124 1.05403 1.21153 0.94252 0.98869 0.94678 1.21212 1.04036 0.93087 1.06061 1.17906 0.89177 0.92789 0.90928 1.21127 1.24542 1.07854 1.00257 0.90237 1.28493 1.03965 0.94831 0.94510 1.70468 1.13506 1.21177 1.39061 0.82978 0.71645 0.75695 0.76051 1.17840 1.20081 1.19101 1.22541 0.94211 0.98385 0.93118 1.21570 1.01998 0.92182 1.02160 1.21516 1.00865 0.97874 0.98457 0.88916 0.94022 0.92050 0.93087 0.86697 0.75551 0.85686 0.84610 0.85556 0.89084 0.90543 0.92209 0.89645 0.90967 0.92563 0.90386 0.93747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.86 113.37 1.23 1.67 16 2 O -0.39 -8.96 7.97 -148.98 -1.19 -10.14 16 3 C 0.08 1.76 3.78 31.21 0.12 1.88 16 4 H 0.10 1.54 7.86 -2.39 -0.02 1.52 16 5 C -0.18 -4.74 7.36 31.12 0.23 -4.51 16 6 C 0.12 3.82 3.75 45.52 0.17 3.99 16 7 H 0.07 2.58 7.46 -2.39 -0.02 2.56 16 8 N -0.70 -26.92 4.62 -443.28 -2.05 -28.96 16 9 C 0.56 27.90 7.73 86.67 0.67 28.57 16 10 O -0.58 -33.66 13.17 -4.06 -0.05 -33.72 16 11 C -0.28 -14.53 5.92 -19.70 -0.12 -14.65 16 12 C -0.04 -1.79 9.53 22.50 0.21 -1.57 16 13 C -0.24 -9.73 10.03 22.41 0.22 -9.51 16 14 C -0.07 -3.10 10.01 22.26 0.22 -2.87 16 15 C -0.22 -11.74 7.85 22.72 0.18 -11.56 16 16 C 0.10 5.47 5.18 -21.11 -0.11 5.36 16 17 C -0.51 -30.53 7.67 23.41 0.18 -30.35 16 18 H 0.08 5.06 5.90 -2.91 -0.02 5.04 16 19 C 0.00 -0.16 5.05 85.37 0.43 0.27 16 20 N -0.82 -46.87 12.56 21.88 0.27 -46.60 16 21 Si 1.12 48.52 29.98 68.60 2.06 50.58 16 22 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 25 C -0.08 -1.82 1.34 -51.56 -0.07 -1.89 16 26 C -0.12 -2.00 9.08 71.98 0.65 -1.35 16 27 C -0.13 -2.90 8.44 71.98 0.61 -2.29 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.11 2.51 7.66 -2.39 -0.02 2.49 16 33 H 0.41 14.03 4.12 -92.71 -0.38 13.65 16 34 H 0.13 4.41 6.40 -2.91 -0.02 4.39 16 35 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 36 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 37 H 0.09 4.94 6.92 -2.91 -0.02 4.92 16 38 H 0.28 16.70 6.52 -92.71 -0.60 16.09 16 39 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 1.02 7.34 -2.39 -0.02 1.01 16 42 H 0.06 1.38 5.66 -2.39 -0.01 1.36 16 43 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -72.39 350.30 4.67 -67.72 By element: Atomic # 1 Polarization: 39.13 SS G_CDS: 0.79 Total: 39.92 kcal Atomic # 6 Polarization: -43.63 SS G_CDS: 4.84 Total: -38.80 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -1.77 Total: -75.56 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -1.24 Total: -43.86 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 2.06 Total: 50.58 kcal Total: -72.39 4.67 -67.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601299640.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.858 kcal (2) G-P(sol) polarization free energy of solvation -72.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.98 seconds