Wall clock time and date at job start Tue Mar 31 2020 09:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47057 * 2 1 4 4 C 1.53002 * 109.50822 * 60.10896 * 3 2 1 5 5 C 1.53303 * 109.50969 * 180.25404 * 3 2 1 6 6 N 1.47149 * 108.38347 * 172.22992 * 5 3 2 7 7 C 1.34779 * 120.98403 * 129.44524 * 6 5 3 8 8 O 1.21606 * 119.99600 * 354.68898 * 7 6 5 9 9 C 1.47435 * 120.00077 * 174.68425 * 7 6 5 10 10 C 1.39221 * 120.28132 * 311.86858 * 9 7 6 11 11 C 1.38228 * 120.08975 * 179.72046 * 10 9 7 12 12 C 1.38829 * 120.67236 * 0.56024 * 11 10 9 13 13 C 1.37598 * 120.57053 * 359.71744 * 12 11 10 14 14 C 1.40705 * 119.88398 * 0.02562 * 13 12 11 15 15 C 1.40882 * 120.32752 * 179.97438 * 14 13 12 16 16 H 1.08006 * 120.00278 * 151.62104 * 15 14 13 17 17 C 1.40278 * 120.00374 * 331.62303 * 15 14 13 18 18 N 1.30623 * 119.99549 * 349.30810 * 17 15 14 19 19 Si 1.86800 * 120.00215 * 169.31063 * 17 15 14 20 20 H 1.48495 * 109.47224 * 60.00134 * 19 17 15 21 21 H 1.48502 * 109.46896 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47065 * 299.99892 * 19 17 15 23 23 C 1.47159 * 118.03668 * 309.46810 * 6 5 3 24 24 C 1.53291 * 108.38397 * 50.53389 * 23 6 5 25 25 O 1.42953 * 109.51587 * 300.00490 * 3 2 1 26 26 H 1.08992 * 109.47213 * 59.99036 * 1 2 3 27 27 H 1.08997 * 109.47264 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46587 * 299.99352 * 1 2 3 29 29 H 1.09001 * 109.47020 * 120.00982 * 2 1 3 30 30 H 1.09002 * 109.46652 * 240.00156 * 2 1 3 31 31 H 1.09002 * 109.47436 * 59.99922 * 4 3 2 32 32 H 1.09012 * 109.46604 * 179.97438 * 4 3 2 33 33 H 1.08997 * 109.47351 * 299.99306 * 4 3 2 34 34 H 1.08997 * 109.68237 * 291.95096 * 5 3 2 35 35 H 1.09004 * 109.67714 * 52.50928 * 5 3 2 36 36 H 1.08002 * 119.95593 * 359.97438 * 10 9 7 37 37 H 1.08000 * 119.66152 * 180.25900 * 11 10 9 38 38 H 1.07997 * 119.71303 * 179.74716 * 12 11 10 39 39 H 1.07998 * 120.05798 * 180.02562 * 13 12 11 40 40 H 0.97006 * 120.00141 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.67508 * 290.81326 * 23 6 5 42 42 H 1.08993 * 109.68121 * 170.26034 * 23 6 5 43 43 H 1.09000 * 109.51466 * 187.77647 * 24 23 6 44 44 H 1.09003 * 109.55464 * 67.64935 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5327 2.1638 1.2503 5 6 3.5731 1.4435 -0.0064 6 7 4.0354 2.8277 -0.1951 7 6 4.9539 3.3707 0.6283 8 8 5.3419 2.7505 1.5997 9 6 5.4884 4.7165 0.3511 10 6 5.9342 5.0456 -0.9261 11 6 6.4292 6.3103 -1.1829 12 6 6.4994 7.2617 -0.1743 13 6 6.0718 6.9642 1.0993 14 6 5.5587 5.6857 1.3858 15 6 5.1187 5.3709 2.6866 16 1 4.3441 4.6322 2.8308 17 6 5.6866 6.0169 3.7948 18 7 6.7576 6.7497 3.6454 19 14 4.9114 5.8292 5.4839 20 1 4.9052 4.3951 5.8691 21 1 5.6964 6.6047 6.4777 22 1 3.5168 6.3382 5.4478 23 6 3.4648 3.6018 -1.3090 24 6 1.9372 3.4955 -1.2391 25 8 1.5640 2.1173 -1.1668 26 1 -0.3633 0.5139 -0.8898 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8934 -0.5140 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8976 1.6497 2.1396 32 1 1.8968 3.1913 1.2499 33 1 0.4428 2.1642 1.2525 34 1 3.9444 1.0587 0.9434 35 1 3.9371 0.8203 -0.8232 36 1 5.8894 4.3129 -1.7183 37 1 6.7692 6.5595 -2.1773 38 1 6.8927 8.2438 -0.3912 39 1 6.1298 7.7107 1.8776 40 1 7.1502 7.1967 4.4116 41 1 3.8181 3.1957 -2.2569 42 1 3.7646 4.6460 -1.2219 43 1 1.4998 3.9449 -2.1306 44 1 1.5754 4.0176 -0.3533 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601511349.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:59 Heat of formation + Delta-G solvation = -78.293899 kcal Electronic energy + Delta-G solvation = -26020.133734 eV Core-core repulsion = 22515.356555 eV Total energy + Delta-G solvation = -3504.777179 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.64517 -39.97343 -38.50937 -36.12587 -35.54063 -35.23732 -32.08854 -31.58945 -30.82454 -29.83591 -28.03533 -27.12908 -25.18443 -24.33651 -22.98711 -22.71587 -20.72081 -20.12674 -19.14670 -18.17934 -17.51928 -17.31371 -16.87514 -16.68795 -16.11588 -15.93310 -15.74509 -15.33200 -14.95757 -14.87555 -14.47789 -14.43196 -14.13330 -13.95094 -13.53360 -13.25206 -13.17548 -13.05505 -12.92865 -12.86711 -12.79539 -12.55757 -12.37696 -12.23969 -11.95011 -11.83394 -11.68646 -11.56830 -11.37302 -11.15353 -10.97687 -10.51019 -9.53398 -9.33431 -9.29532 -8.70146 -6.42891 0.62307 0.99798 1.29229 1.40332 1.47051 1.95035 2.14615 2.17886 2.69254 2.73910 3.58750 3.64664 3.80423 3.82667 3.98080 4.09807 4.19176 4.37636 4.39078 4.40054 4.53745 4.56466 4.60486 4.63880 4.67778 4.71880 4.84914 4.88022 4.88847 5.02704 5.05923 5.09469 5.14650 5.22709 5.30472 5.33325 5.50494 5.54724 5.62671 5.84920 5.98597 6.09782 6.18636 6.25752 6.46058 6.62892 6.84268 6.92356 7.43263 8.24359 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014559 B = 0.005540 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.747257 B = 5053.078582 C = 6364.765076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 C 0.109 3.891 4 C -0.172 4.172 5 C 0.088 3.912 6 N -0.616 5.616 7 C 0.579 3.421 8 O -0.585 6.585 9 C -0.272 4.272 10 C -0.056 4.056 11 C -0.234 4.234 12 C -0.092 4.092 13 C -0.182 4.182 14 C 0.115 3.885 15 C -0.464 4.464 16 H 0.056 0.944 17 C 0.037 3.963 18 N -0.816 5.816 19 Si 0.974 3.026 20 H -0.274 1.274 21 H -0.256 1.256 22 H -0.254 1.254 23 C 0.073 3.927 24 C 0.047 3.953 25 O -0.370 6.370 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.036 0.964 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.121 0.879 37 H 0.131 0.869 38 H 0.120 0.880 39 H 0.109 0.891 40 H 0.291 0.709 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.135 0.865 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.546 -6.416 -8.663 15.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.141 4.141 3 C 0.069 3.931 4 C -0.229 4.229 5 C -0.035 4.035 6 N -0.350 5.350 7 C 0.372 3.628 8 O -0.466 6.466 9 C -0.276 4.276 10 C -0.074 4.074 11 C -0.253 4.253 12 C -0.110 4.110 13 C -0.201 4.201 14 C 0.112 3.888 15 C -0.493 4.493 16 H 0.075 0.925 17 C -0.179 4.179 18 N -0.442 5.442 19 Si 0.795 3.205 20 H -0.199 1.199 21 H -0.180 1.180 22 H -0.178 1.178 23 C -0.050 4.050 24 C -0.030 4.030 25 O -0.289 6.289 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.139 0.861 37 H 0.149 0.851 38 H 0.138 0.862 39 H 0.127 0.873 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.153 0.847 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.270 -6.690 -8.156 14.723 hybrid contribution 0.422 0.270 1.295 1.389 sum -9.849 -6.420 -6.861 13.612 Atomic orbital electron populations 1.21698 0.94037 1.02270 1.02089 1.21493 0.97759 0.91358 1.03532 1.21865 0.90981 0.94699 0.85536 1.22354 1.02410 1.00218 0.97932 1.22320 0.95176 0.83063 1.02947 1.48113 1.41630 1.13986 1.31272 1.18581 0.77795 0.85868 0.80520 1.90639 1.61680 1.64232 1.30042 1.19675 1.17574 0.93532 0.96848 1.20908 0.96442 0.96414 0.93662 1.20747 1.10882 0.94304 0.99369 1.21162 0.97806 0.99111 0.92960 1.21382 1.05874 0.96496 0.96345 1.17723 0.88346 0.90737 0.91991 1.19580 1.18914 1.19048 0.91763 0.92532 1.26686 0.93932 0.92405 1.04871 1.69717 1.16053 1.23756 1.34673 0.85382 0.79798 0.79079 0.76280 1.19924 1.17983 1.17819 1.22658 0.94779 0.98194 0.89347 1.23095 0.93152 0.83189 1.03602 1.87931 1.75736 1.22952 1.42237 0.92438 0.91217 0.92828 0.89865 0.90171 0.92210 0.94521 0.89958 0.90622 0.89902 0.86087 0.85114 0.86248 0.87326 0.89799 0.89229 0.88694 0.84707 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.42 71.98 0.68 -1.85 16 2 C -0.10 -2.09 5.21 30.60 0.16 -1.93 16 3 C 0.11 2.88 0.79 -10.69 -0.01 2.87 16 4 C -0.17 -4.99 7.74 71.98 0.56 -4.44 16 5 C 0.09 2.78 5.32 86.36 0.46 3.23 16 6 N -0.62 -22.68 2.54 -821.20 -2.09 -24.76 16 7 C 0.58 27.73 6.56 86.67 0.57 28.30 16 8 O -0.59 -32.81 15.19 -4.05 -0.06 -32.87 16 9 C -0.27 -13.33 4.88 -19.70 -0.10 -13.43 16 10 C -0.06 -2.28 7.59 22.50 0.17 -2.11 16 11 C -0.23 -9.14 10.03 22.41 0.22 -8.91 16 12 C -0.09 -3.96 10.01 22.26 0.22 -3.74 16 13 C -0.18 -9.30 8.66 22.72 0.20 -9.10 16 14 C 0.12 6.32 5.58 -21.11 -0.12 6.20 16 15 C -0.46 -26.49 7.89 23.41 0.18 -26.30 16 16 H 0.06 3.35 6.96 -2.91 -0.02 3.33 16 17 C 0.04 1.94 5.26 85.37 0.45 2.39 16 18 N -0.82 -43.49 10.81 21.88 0.24 -43.25 16 19 Si 0.97 40.97 29.58 68.60 2.03 43.00 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 21 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 22 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 23 C 0.07 2.12 5.37 86.35 0.46 2.58 16 24 C 0.05 1.17 6.60 72.08 0.48 1.64 16 25 O -0.37 -9.50 9.55 -148.98 -1.42 -10.93 16 26 H 0.06 1.08 7.68 -2.39 -0.02 1.06 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.05 0.96 6.44 -2.38 -0.02 0.95 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.04 1.27 6.12 -2.38 -0.01 1.26 16 33 H 0.08 2.03 6.44 -2.39 -0.02 2.02 16 34 H 0.08 2.73 7.06 -2.39 -0.02 2.71 16 35 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.12 4.19 7.30 -2.91 -0.02 4.17 16 37 H 0.13 4.11 8.06 -2.91 -0.02 4.08 16 38 H 0.12 4.39 8.06 -2.91 -0.02 4.36 16 39 H 0.11 5.82 6.19 -2.91 -0.02 5.80 16 40 H 0.29 13.97 8.29 -92.70 -0.77 13.21 16 41 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.09 3.05 5.34 -2.39 -0.01 3.03 16 43 H 0.14 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.05 1.29 6.26 -2.39 -0.01 1.27 16 Total: -1.00 -67.60 343.08 4.28 -63.32 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 1.00 Total: 30.07 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 4.59 Total: -24.57 kcal Atomic # 7 Polarization: -66.17 SS G_CDS: -1.85 Total: -68.02 kcal Atomic # 8 Polarization: -42.31 SS G_CDS: -1.48 Total: -43.79 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -67.60 4.28 -63.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601511349.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.977 kcal (2) G-P(sol) polarization free energy of solvation -67.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds