Wall clock time and date at job start Tue Mar 31 2020 09:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46498 * 2 1 4 4 O 1.42900 * 109.50073 * 300.06289 * 3 2 1 5 5 C 1.53040 * 109.49383 * 179.97438 * 3 2 1 6 6 C 1.53044 * 109.53717 * 178.68334 * 5 3 2 7 7 C 1.53187 * 109.31073 * 61.36627 * 6 5 3 8 8 N 1.46928 * 108.77822 * 305.36472 * 7 6 5 9 9 C 1.34774 * 120.63107 * 233.58690 * 8 7 6 10 10 O 1.21550 * 120.00061 * 174.47708 * 9 8 7 11 11 C 1.47887 * 119.99942 * 354.48139 * 9 8 7 12 12 C 1.39925 * 120.02182 * 147.01054 * 11 9 8 13 13 C 1.38332 * 120.35704 * 179.97438 * 12 11 9 14 14 C 1.37758 * 120.40967 * 0.02562 * 13 12 11 15 15 C 1.40746 * 120.04028 * 0.02562 * 14 13 12 16 16 C 1.41435 * 120.17752 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00043 * 152.70838 * 16 15 14 18 18 C 1.39943 * 119.99976 * 332.70068 * 16 15 14 19 19 N 1.30827 * 119.99964 * 163.41812 * 18 16 15 20 20 Si 1.86800 * 119.99726 * 343.42038 * 18 16 15 21 21 H 1.48500 * 109.46834 * 95.42229 * 20 18 16 22 22 H 1.48497 * 109.46943 * 215.41646 * 20 18 16 23 23 H 1.48492 * 109.47394 * 335.42200 * 20 18 16 24 24 C 1.38989 * 120.02621 * 326.73466 * 11 9 8 25 25 C 1.46926 * 118.73642 * 53.60862 * 8 7 6 26 26 H 1.08996 * 109.47394 * 299.99868 * 1 2 3 27 27 H 1.09006 * 109.46821 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47156 * 60.00493 * 1 2 3 29 29 H 1.08995 * 109.46965 * 119.99645 * 2 1 3 30 30 H 1.08996 * 109.47688 * 240.00592 * 2 1 3 31 31 H 0.96705 * 113.99697 * 59.99829 * 4 3 2 32 32 H 1.09001 * 109.46158 * 298.70311 * 5 3 2 33 33 H 1.09006 * 109.46010 * 58.66391 * 5 3 2 34 34 H 1.08995 * 109.49786 * 181.31983 * 6 5 3 35 35 H 1.08999 * 109.49956 * 301.38273 * 6 5 3 36 36 H 1.08998 * 109.58763 * 65.15261 * 7 6 5 37 37 H 1.08997 * 109.58599 * 185.57891 * 7 6 5 38 38 H 1.07999 * 119.82479 * 0.02562 * 12 11 9 39 39 H 1.07995 * 119.79459 * 180.02562 * 13 12 11 40 40 H 1.08000 * 119.97723 * 180.02562 * 14 13 12 41 41 H 0.96999 * 119.99821 * 180.02562 * 19 18 16 42 42 H 1.07996 * 120.20051 * 359.97438 * 24 11 9 43 43 H 1.08999 * 109.58604 * 186.60598 * 25 8 7 44 44 H 1.08998 * 109.58592 * 66.18359 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 1.5626 2.1172 -1.1658 5 6 3.5703 1.4434 0.0006 6 6 4.0813 2.8856 -0.0325 7 6 3.5970 3.6236 1.2194 8 7 2.1350 3.5033 1.3035 9 6 1.3616 4.6002 1.4255 10 8 0.1510 4.4970 1.3931 11 6 1.9860 5.9296 1.5988 12 6 1.3711 7.0669 1.0637 13 6 1.9488 8.3139 1.2221 14 6 3.1358 8.4504 1.9077 15 6 3.7695 7.3177 2.4520 16 6 4.9885 7.4545 3.1560 17 1 5.2529 6.7403 3.9218 18 6 5.8521 8.5151 2.8601 19 7 6.8012 8.8398 3.7001 20 14 5.6498 9.4674 1.2659 21 1 4.8311 10.6811 1.5149 22 1 6.9856 9.8676 0.7554 23 1 4.9717 8.6108 0.2602 24 6 3.1809 6.0509 2.2982 25 6 1.5323 2.1643 1.2524 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 0.5985 2.1556 -1.2310 32 1 3.9333 0.9501 0.9023 33 1 3.9340 0.9089 -0.8770 34 1 5.1711 2.8849 -0.0557 35 1 3.6989 3.3868 -0.9216 36 1 4.0516 3.1789 2.1046 37 1 3.8738 4.6758 1.1534 38 1 0.4401 6.9709 0.5248 39 1 1.4662 9.1856 0.8057 40 1 3.5804 9.4273 2.0276 41 1 7.3995 9.5752 3.4952 42 1 3.6564 5.1764 2.7170 43 1 0.4469 2.2536 1.2080 44 1 1.8186 1.6006 2.1403 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601820378.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:19 Heat of formation + Delta-G solvation = -66.739648 kcal Electronic energy + Delta-G solvation = -25619.557160 eV Core-core repulsion = 22115.281011 eV Total energy + Delta-G solvation = -3504.276149 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.40427 -38.60247 -37.21426 -35.57999 -33.69258 -33.07074 -32.21488 -30.73067 -30.49493 -28.76408 -25.79415 -25.28133 -24.31253 -22.57505 -21.46179 -20.81182 -20.18761 -19.21484 -17.51504 -16.82401 -16.27676 -16.08844 -15.57052 -15.24256 -14.78942 -14.60794 -14.49167 -14.10732 -13.76819 -13.53192 -13.26300 -13.08062 -12.75348 -12.61433 -12.48786 -12.38367 -12.11203 -12.01763 -11.69618 -11.51884 -11.24213 -11.20682 -10.94849 -10.83718 -10.77697 -10.45575 -10.31965 -10.05065 -9.89116 -9.73175 -9.42045 -9.08887 -8.30606 -7.80519 -7.76030 -7.04421 -4.60135 1.98511 2.49959 3.03672 3.15398 3.23251 3.26919 3.53240 3.89219 4.18084 4.42564 4.47899 4.62325 4.74040 4.99292 5.05428 5.15303 5.18237 5.28783 5.35316 5.49314 5.52207 5.65181 5.69925 5.73800 5.78235 5.88149 5.91122 5.91218 6.03464 6.08317 6.15409 6.23703 6.32729 6.46127 6.55088 6.66883 6.82869 6.95320 7.19172 7.39957 7.48135 7.63753 7.69006 7.81775 7.88574 8.22081 8.47584 8.66210 8.67796 9.97543 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.022324 B = 0.004222 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.950580 B = 6630.894692 C = 7210.182371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.147 4.147 3 C 0.120 3.880 4 O -0.549 6.549 5 C -0.104 4.104 6 C -0.133 4.133 7 C 0.085 3.915 8 N -0.602 5.602 9 C 0.570 3.430 10 O -0.556 6.556 11 C -0.098 4.098 12 C -0.187 4.187 13 C -0.084 4.084 14 C -0.220 4.220 15 C 0.085 3.915 16 C -0.444 4.444 17 H 0.092 0.908 18 C 0.084 3.916 19 N -0.805 5.805 20 Si 0.911 3.089 21 H -0.271 1.271 22 H -0.291 1.291 23 H -0.242 1.242 24 C -0.184 4.184 25 C 0.087 3.913 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.373 0.627 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.123 0.877 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.287 0.713 42 H 0.116 0.884 43 H 0.094 0.906 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.444 -13.406 -6.670 15.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.185 4.185 3 C 0.078 3.922 4 O -0.355 6.355 5 C -0.142 4.142 6 C -0.171 4.171 7 C -0.037 4.037 8 N -0.334 5.334 9 C 0.362 3.638 10 O -0.436 6.436 11 C -0.101 4.101 12 C -0.208 4.208 13 C -0.102 4.102 14 C -0.239 4.239 15 C 0.082 3.918 16 C -0.472 4.472 17 H 0.110 0.890 18 C -0.136 4.136 19 N -0.429 5.429 20 Si 0.738 3.262 21 H -0.197 1.197 22 H -0.219 1.219 23 H -0.165 1.165 24 C -0.204 4.204 25 C -0.037 4.037 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.221 0.779 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.140 0.860 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.097 0.903 42 H 0.133 0.867 43 H 0.113 0.887 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.190 -13.277 -6.659 15.433 hybrid contribution -0.465 0.380 -0.368 0.705 sum -4.655 -12.897 -7.027 15.407 Atomic orbital electron populations 1.21865 0.95532 1.02179 1.02274 1.22163 0.96587 0.96759 1.02999 1.21569 0.95000 0.90151 0.85431 1.86549 1.26492 1.79372 1.43068 1.21521 0.92239 0.98066 1.02343 1.21875 1.00552 0.95151 0.99492 1.22512 0.79180 1.04830 0.97185 1.47781 1.07283 1.05248 1.73083 1.18835 0.86120 0.84442 0.74408 1.90652 1.14348 1.86706 1.51874 1.19388 0.96391 0.91465 1.02807 1.20369 1.01103 0.91451 1.07833 1.20559 0.95567 0.95954 0.98110 1.21162 0.97683 0.97743 1.07330 1.17646 0.93242 0.90518 0.90436 1.19487 1.00925 1.09453 1.17313 0.88987 1.26168 0.93911 0.95382 0.98124 1.69672 1.14616 1.24427 1.34151 0.86324 0.76836 0.80192 0.82805 1.19701 1.21889 1.16471 1.21409 0.96376 0.97183 1.05457 1.22250 1.00192 0.83752 0.97489 0.92048 0.92289 0.92464 0.90938 0.90967 0.77928 0.90736 0.91303 0.90729 0.90548 0.91670 0.85952 0.87883 0.88132 0.88024 0.90293 0.86659 0.88748 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.26 37.16 0.34 -0.97 16 2 C -0.15 -1.28 5.21 -26.73 -0.14 -1.42 16 3 C 0.12 1.36 0.75 -90.50 -0.07 1.30 16 4 O -0.55 -7.21 12.14 -35.23 -0.43 -7.64 16 5 C -0.10 -1.15 4.92 -26.69 -0.13 -1.28 16 6 C -0.13 -1.73 5.94 -26.61 -0.16 -1.89 16 7 C 0.09 1.29 4.74 -3.71 -0.02 1.27 16 8 N -0.60 -9.91 2.91 -173.87 -0.51 -10.42 16 9 C 0.57 11.54 7.41 -12.31 -0.09 11.44 16 10 O -0.56 -12.33 16.19 5.32 0.09 -12.24 16 11 C -0.10 -2.11 5.36 -105.04 -0.56 -2.68 16 12 C -0.19 -4.08 9.61 -38.92 -0.37 -4.45 16 13 C -0.08 -1.80 10.01 -39.72 -0.40 -2.19 16 14 C -0.22 -5.12 7.04 -38.81 -0.27 -5.39 16 15 C 0.08 2.03 5.19 -106.87 -0.55 1.48 16 16 C -0.44 -11.29 9.59 -37.73 -0.36 -11.66 16 17 H 0.09 2.44 8.06 -52.49 -0.42 2.01 16 18 C 0.08 2.09 5.44 -17.34 -0.09 1.99 16 19 N -0.81 -20.55 13.93 55.55 0.77 -19.78 16 20 Si 0.91 19.89 24.40 -169.99 -4.15 15.74 16 21 H -0.27 -5.77 6.71 56.52 0.38 -5.40 16 22 H -0.29 -6.16 7.11 56.52 0.40 -5.75 16 23 H -0.24 -5.36 6.66 56.52 0.38 -4.99 16 24 C -0.18 -4.04 7.10 -38.44 -0.27 -4.32 16 25 C 0.09 1.15 4.84 -3.71 -0.02 1.13 16 26 H 0.06 0.54 6.57 -51.93 -0.34 0.19 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.45 6.78 -51.93 -0.35 0.10 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.37 4.18 7.34 45.56 0.33 4.51 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.15 7.61 -51.93 -0.40 0.75 16 36 H 0.07 0.89 8.04 -51.93 -0.42 0.47 16 37 H 0.12 2.15 4.31 -51.93 -0.22 1.92 16 38 H 0.10 2.15 7.96 -52.49 -0.42 1.73 16 39 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 40 H 0.10 2.35 4.26 -52.49 -0.22 2.12 16 41 H 0.29 6.63 8.30 -40.82 -0.34 6.30 16 42 H 0.12 2.32 5.79 -52.49 -0.30 2.02 16 43 H 0.09 1.34 5.61 -51.93 -0.29 1.05 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 338.11 15.07 5.10 5.10 Total: -1.00 -28.72 338.11 -7.92 -36.64 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -5.62 Total: 10.22 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -3.17 Total: -17.62 kcal Atomic # 7 Polarization: -30.46 SS G_CDS: 0.27 Total: -30.19 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.34 Total: -19.88 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.15 Total: 15.74 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.72 -7.92 -36.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601820378.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.100 kcal (2) G-P(sol) polarization free energy of solvation -28.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds