Wall clock time and date at job start Tue Mar 31 2020 09:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46498 * 2 1 4 4 O 1.42900 * 109.50073 * 300.06289 * 3 2 1 5 5 C 1.53040 * 109.49383 * 179.97438 * 3 2 1 6 6 C 1.53044 * 109.53717 * 178.68334 * 5 3 2 7 7 C 1.53187 * 109.31073 * 61.36627 * 6 5 3 8 8 N 1.46928 * 108.77822 * 305.36472 * 7 6 5 9 9 C 1.34774 * 120.63107 * 233.58690 * 8 7 6 10 10 O 1.21550 * 120.00061 * 174.47708 * 9 8 7 11 11 C 1.47887 * 119.99942 * 354.48139 * 9 8 7 12 12 C 1.39925 * 120.02182 * 147.01054 * 11 9 8 13 13 C 1.38332 * 120.35704 * 179.97438 * 12 11 9 14 14 C 1.37758 * 120.40967 * 0.02562 * 13 12 11 15 15 C 1.40746 * 120.04028 * 0.02562 * 14 13 12 16 16 C 1.41435 * 120.17752 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00043 * 152.70838 * 16 15 14 18 18 C 1.39943 * 119.99976 * 332.70068 * 16 15 14 19 19 N 1.30827 * 119.99964 * 163.41812 * 18 16 15 20 20 Si 1.86800 * 119.99726 * 343.42038 * 18 16 15 21 21 H 1.48500 * 109.46834 * 95.42229 * 20 18 16 22 22 H 1.48497 * 109.46943 * 215.41646 * 20 18 16 23 23 H 1.48492 * 109.47394 * 335.42200 * 20 18 16 24 24 C 1.38989 * 120.02621 * 326.73466 * 11 9 8 25 25 C 1.46926 * 118.73642 * 53.60862 * 8 7 6 26 26 H 1.08996 * 109.47394 * 299.99868 * 1 2 3 27 27 H 1.09006 * 109.46821 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47156 * 60.00493 * 1 2 3 29 29 H 1.08995 * 109.46965 * 119.99645 * 2 1 3 30 30 H 1.08996 * 109.47688 * 240.00592 * 2 1 3 31 31 H 0.96705 * 113.99697 * 59.99829 * 4 3 2 32 32 H 1.09001 * 109.46158 * 298.70311 * 5 3 2 33 33 H 1.09006 * 109.46010 * 58.66391 * 5 3 2 34 34 H 1.08995 * 109.49786 * 181.31983 * 6 5 3 35 35 H 1.08999 * 109.49956 * 301.38273 * 6 5 3 36 36 H 1.08998 * 109.58763 * 65.15261 * 7 6 5 37 37 H 1.08997 * 109.58599 * 185.57891 * 7 6 5 38 38 H 1.07999 * 119.82479 * 0.02562 * 12 11 9 39 39 H 1.07995 * 119.79459 * 180.02562 * 13 12 11 40 40 H 1.08000 * 119.97723 * 180.02562 * 14 13 12 41 41 H 0.96999 * 119.99821 * 180.02562 * 19 18 16 42 42 H 1.07996 * 120.20051 * 359.97438 * 24 11 9 43 43 H 1.08999 * 109.58604 * 186.60598 * 25 8 7 44 44 H 1.08998 * 109.58592 * 66.18359 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 1.5626 2.1172 -1.1658 5 6 3.5703 1.4434 0.0006 6 6 4.0813 2.8856 -0.0325 7 6 3.5970 3.6236 1.2194 8 7 2.1350 3.5033 1.3035 9 6 1.3616 4.6002 1.4255 10 8 0.1510 4.4970 1.3931 11 6 1.9860 5.9296 1.5988 12 6 1.3711 7.0669 1.0637 13 6 1.9488 8.3139 1.2221 14 6 3.1358 8.4504 1.9077 15 6 3.7695 7.3177 2.4520 16 6 4.9885 7.4545 3.1560 17 1 5.2529 6.7403 3.9218 18 6 5.8521 8.5151 2.8601 19 7 6.8012 8.8398 3.7001 20 14 5.6498 9.4674 1.2659 21 1 4.8311 10.6811 1.5149 22 1 6.9856 9.8676 0.7554 23 1 4.9717 8.6108 0.2602 24 6 3.1809 6.0509 2.2982 25 6 1.5323 2.1643 1.2524 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 0.5985 2.1556 -1.2310 32 1 3.9333 0.9501 0.9023 33 1 3.9340 0.9089 -0.8770 34 1 5.1711 2.8849 -0.0557 35 1 3.6989 3.3868 -0.9216 36 1 4.0516 3.1789 2.1046 37 1 3.8738 4.6758 1.1534 38 1 0.4401 6.9709 0.5248 39 1 1.4662 9.1856 0.8057 40 1 3.5804 9.4273 2.0276 41 1 7.3995 9.5752 3.4952 42 1 3.6564 5.1764 2.7170 43 1 0.4469 2.2536 1.2080 44 1 1.8186 1.6006 2.1403 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601820378.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:18 Heat of formation + Delta-G solvation = -84.791229 kcal Electronic energy + Delta-G solvation = -25620.339935 eV Core-core repulsion = 22115.281011 eV Total energy + Delta-G solvation = -3505.058925 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.70576 -39.93623 -38.85944 -36.80654 -35.53826 -33.98158 -33.30993 -32.46120 -32.11948 -29.85651 -27.22867 -26.94285 -25.28146 -24.12884 -22.62562 -22.38207 -21.30758 -20.62734 -19.12970 -17.99092 -17.83170 -17.71996 -16.79341 -16.54922 -16.42842 -15.88417 -15.59983 -15.47407 -15.07258 -14.74173 -14.61967 -14.41171 -14.33893 -13.88406 -13.83665 -13.61231 -13.42305 -13.20402 -12.97002 -12.84455 -12.67899 -12.47929 -12.33898 -11.95437 -11.94162 -11.88355 -11.64359 -11.49563 -11.28745 -11.20914 -11.00579 -10.67046 -9.69851 -9.58774 -9.42172 -8.91357 -6.52778 0.25377 0.72373 1.27874 1.42011 1.49440 1.80551 2.02066 2.12071 2.61323 3.30093 3.43636 3.49690 3.70006 3.83295 3.86581 4.06419 4.18003 4.24100 4.30978 4.39886 4.43166 4.50816 4.54311 4.61027 4.65788 4.78882 4.86076 4.89263 4.91131 4.93005 5.04110 5.08954 5.14630 5.15865 5.22574 5.32536 5.40104 5.43958 5.58143 5.65037 5.74060 5.84564 6.07326 6.30458 6.33500 6.62987 6.75712 6.77679 7.12920 8.15914 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.022324 B = 0.004222 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.950580 B = 6630.894692 C = 7210.182371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.138 4.138 3 C 0.121 3.879 4 O -0.568 6.568 5 C -0.103 4.103 6 C -0.127 4.127 7 C 0.081 3.919 8 N -0.593 5.593 9 C 0.564 3.436 10 O -0.583 6.583 11 C -0.108 4.108 12 C -0.188 4.188 13 C -0.083 4.083 14 C -0.233 4.233 15 C 0.069 3.931 16 C -0.471 4.471 17 H 0.066 0.934 18 C 0.052 3.948 19 N -0.842 5.842 20 Si 0.960 3.040 21 H -0.260 1.260 22 H -0.279 1.279 23 H -0.249 1.249 24 C -0.177 4.177 25 C 0.081 3.919 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.378 0.622 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.052 0.948 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.134 0.866 40 H 0.104 0.896 41 H 0.295 0.705 42 H 0.127 0.873 43 H 0.084 0.916 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.896 -14.871 -7.894 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.176 4.176 3 C 0.080 3.920 4 O -0.375 6.375 5 C -0.141 4.141 6 C -0.165 4.165 7 C -0.040 4.040 8 N -0.324 5.324 9 C 0.355 3.645 10 O -0.465 6.465 11 C -0.111 4.111 12 C -0.208 4.208 13 C -0.101 4.101 14 C -0.252 4.252 15 C 0.067 3.933 16 C -0.500 4.500 17 H 0.084 0.916 18 C -0.164 4.164 19 N -0.468 5.468 20 Si 0.784 3.216 21 H -0.186 1.186 22 H -0.206 1.206 23 H -0.173 1.173 24 C -0.197 4.197 25 C -0.042 4.042 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.227 0.773 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.131 0.869 39 H 0.152 0.848 40 H 0.121 0.879 41 H 0.106 0.894 42 H 0.145 0.855 43 H 0.102 0.898 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.623 -14.773 -7.883 17.371 hybrid contribution -0.434 0.715 -0.002 0.836 sum -5.057 -14.058 -7.885 16.893 Atomic orbital electron populations 1.21869 0.95310 1.02925 1.01790 1.22095 0.96722 0.94672 1.04118 1.21680 0.95296 0.91301 0.83719 1.86531 1.27183 1.79945 1.43847 1.21589 0.91824 0.96615 1.04049 1.21812 1.01540 0.96166 0.97015 1.22553 0.78450 1.03764 0.99278 1.47840 1.07692 1.05669 1.71152 1.18660 0.85979 0.84891 0.74993 1.90633 1.15182 1.87091 1.53580 1.19675 0.96258 0.92775 1.02366 1.20681 1.01273 0.91730 1.07083 1.20875 0.94836 0.97077 0.97316 1.21307 0.98468 0.97563 1.07849 1.17789 0.93059 0.91684 0.90816 1.19454 1.02389 1.10061 1.18132 0.91616 1.26754 0.93457 0.95892 1.00286 1.69694 1.15789 1.25690 1.35592 0.85576 0.77345 0.79233 0.79423 1.18592 1.20622 1.17278 1.21532 0.96316 0.97013 1.04800 1.22555 0.99633 0.82263 0.99703 0.92890 0.90911 0.92666 0.89328 0.90262 0.77292 0.88501 0.90114 0.89018 0.92939 0.89741 0.88678 0.86903 0.84841 0.87867 0.89437 0.85531 0.89756 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.26 71.98 0.67 -1.59 16 2 C -0.14 -1.96 5.21 30.60 0.16 -1.80 16 3 C 0.12 2.46 0.75 -10.71 -0.01 2.45 16 4 O -0.57 -14.11 12.14 -148.98 -1.81 -15.92 16 5 C -0.10 -1.96 4.92 30.62 0.15 -1.81 16 6 C -0.13 -3.09 5.94 30.67 0.18 -2.91 16 7 C 0.08 2.36 4.74 86.36 0.41 2.77 16 8 N -0.59 -18.87 2.91 -822.28 -2.40 -21.27 16 9 C 0.56 22.55 7.41 86.80 0.64 23.20 16 10 O -0.58 -25.63 16.19 -3.87 -0.06 -25.69 16 11 C -0.11 -4.63 5.36 -20.13 -0.11 -4.74 16 12 C -0.19 -7.96 9.61 22.70 0.22 -7.74 16 13 C -0.08 -3.43 10.01 22.18 0.22 -3.21 16 14 C -0.23 -10.68 7.04 22.77 0.16 -10.52 16 15 C 0.07 3.36 5.19 -21.32 -0.11 3.25 16 16 C -0.47 -24.76 9.59 23.47 0.23 -24.53 16 17 H 0.07 3.67 8.06 -2.91 -0.02 3.64 16 18 C 0.05 2.63 5.44 85.26 0.46 3.09 16 19 N -0.84 -43.91 13.93 21.83 0.30 -43.60 16 20 Si 0.96 40.69 24.40 68.60 1.67 42.36 16 21 H -0.26 -10.51 6.71 99.48 0.67 -9.85 16 22 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.25 -10.76 6.66 99.48 0.66 -10.09 16 24 C -0.18 -7.81 7.10 23.01 0.16 -7.64 16 25 C 0.08 1.99 4.84 86.36 0.42 2.41 16 26 H 0.05 0.83 6.57 -2.39 -0.02 0.81 16 27 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.05 0.78 6.78 -2.39 -0.02 0.77 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.38 8.14 7.34 -74.05 -0.54 7.59 16 32 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.05 1.53 7.61 -2.39 -0.02 1.51 16 36 H 0.08 2.14 8.04 -2.39 -0.02 2.12 16 37 H 0.10 3.33 4.31 -2.39 -0.01 3.32 16 38 H 0.11 4.55 7.96 -2.91 -0.02 4.52 16 39 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 40 H 0.10 4.66 4.26 -2.91 -0.01 4.65 16 41 H 0.30 13.84 8.30 -92.71 -0.77 13.07 16 42 H 0.13 5.15 5.79 -2.91 -0.02 5.14 16 43 H 0.08 2.30 5.61 -2.39 -0.01 2.29 16 44 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -62.45 338.11 1.96 -60.48 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: 0.40 Total: 32.97 kcal Atomic # 6 Polarization: -33.18 SS G_CDS: 3.86 Total: -29.33 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: -2.09 Total: -64.87 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -1.87 Total: -41.61 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 1.67 Total: 42.36 kcal Total: -62.45 1.96 -60.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601820378.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.307 kcal (2) G-P(sol) polarization free energy of solvation -62.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds