Wall clock time and date at job start Tue Mar 31 2020 10:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47120 * 2 1 4 4 C 1.53006 * 109.46925 * 240.00057 * 2 1 3 5 5 C 1.50698 * 109.46949 * 60.00044 * 4 2 1 6 6 H 1.08004 * 120.00105 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00218 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99965 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00295 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47362 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47004 * 120.00555 * 9 7 5 12 12 H 1.48494 * 109.47427 * 240.00174 * 9 7 5 13 13 C 1.53003 * 109.46991 * 120.00476 * 2 1 3 14 14 N 1.46496 * 109.47036 * 299.99508 * 13 2 1 15 15 C 1.39924 * 120.00040 * 180.02562 * 14 13 2 16 16 C 1.39342 * 119.94408 * 359.97438 * 15 14 13 17 17 C 1.37749 * 120.62408 * 179.97438 * 16 15 14 18 18 C 1.38937 * 120.06035 * 0.28536 * 17 16 15 19 19 O 1.34944 * 133.31331 * 179.72121 * 18 17 16 20 20 C 1.34422 * 110.88579 * 179.97438 * 19 18 17 21 21 C 1.50706 * 124.92054 * 179.97438 * 20 19 18 22 22 O 1.42903 * 109.46857 * 269.97481 * 21 20 19 23 23 C 1.34000 * 110.15682 * 359.46728 * 20 19 18 24 24 C 1.40447 * 119.44124 * 359.47359 * 18 17 16 25 25 C 1.38345 * 119.94476 * 180.02562 * 15 14 13 26 26 H 1.09001 * 109.46638 * 299.99769 * 1 2 3 27 27 H 1.08997 * 109.47086 * 59.99785 * 1 2 3 28 28 H 1.08996 * 109.47089 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46806 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47316 * 300.00074 * 3 2 1 31 31 H 1.09001 * 109.47176 * 60.00561 * 3 2 1 32 32 H 1.08997 * 109.47057 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.47313 * 300.00325 * 4 2 1 34 34 H 0.96994 * 120.00402 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.46786 * 179.97438 * 13 2 1 36 36 H 1.09004 * 109.47169 * 59.99723 * 13 2 1 37 37 H 0.97001 * 120.00300 * 0.02562 * 14 13 2 38 38 H 1.07996 * 119.68810 * 359.97438 * 16 15 14 39 39 H 1.08002 * 119.96754 * 180.02562 * 17 16 15 40 40 H 1.08998 * 109.47073 * 29.97500 * 21 20 19 41 41 H 1.09000 * 109.46861 * 149.97612 * 21 20 19 42 42 H 0.96703 * 113.99542 * 179.97438 * 22 21 20 43 43 H 1.07999 * 126.90689 * 179.97438 * 23 20 19 44 44 H 1.08003 * 120.22648 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6271 -1.5508 -3.8528 9 14 1.2478 0.3987 -5.2571 10 1 0.4224 1.5651 -4.8530 11 1 2.4025 0.8662 -6.0655 12 1 0.4235 -0.5351 -6.0656 13 6 2.0400 -0.7214 1.2492 14 7 1.5518 -0.0308 2.4454 15 6 1.8902 -0.5086 3.7162 16 6 2.6913 -1.6417 3.8427 17 6 3.0334 -2.1239 5.0868 18 6 2.5749 -1.4838 6.2315 19 8 2.7348 -1.7190 7.5507 20 6 2.0821 -0.8006 8.2838 21 6 2.0484 -0.7642 9.7900 22 8 0.9371 -1.5297 10.2602 23 6 1.4747 0.0842 7.4813 24 6 1.7715 -0.3385 6.1072 25 6 1.4280 0.1441 4.8451 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 3.1300 -0.7209 -1.2496 33 1 1.6766 -1.7490 -1.2494 34 1 2.8614 -1.8822 -4.7337 35 1 3.1300 -0.7218 1.2490 36 1 1.6766 -1.7491 1.2492 37 1 0.9938 0.7577 2.3565 38 1 3.0473 -2.1466 2.9569 39 1 3.6553 -3.0027 5.1725 40 1 2.9729 -1.1858 10.1844 41 1 1.9472 0.2677 10.1263 42 1 0.8534 -1.5507 11.2234 43 1 0.8775 0.9314 7.7845 44 1 0.8067 1.0223 4.7492 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603433800.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:04 Heat of formation + Delta-G solvation = -32.518652 kcal Electronic energy + Delta-G solvation = -23769.854208 eV Core-core repulsion = 20267.061992 eV Total energy + Delta-G solvation = -3502.792216 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.33971 -38.85606 -37.36087 -36.92818 -33.88519 -32.87554 -32.21866 -30.30850 -29.03264 -27.04702 -26.50590 -26.19986 -25.68650 -22.95388 -22.52818 -21.29726 -20.80500 -18.26503 -18.05332 -17.45979 -17.11375 -16.39780 -16.07595 -15.85193 -15.05384 -14.82625 -14.49119 -14.36130 -14.12921 -13.68083 -13.41576 -13.11471 -12.94715 -12.90082 -12.85676 -12.26352 -12.15866 -12.07125 -11.95231 -11.18702 -11.03953 -10.92775 -10.84707 -10.66254 -10.59703 -10.38242 -10.24603 -10.13220 -9.95682 -9.55011 -9.22545 -8.94312 -8.38887 -8.22480 -7.08706 -6.03048 -4.03912 0.87931 1.66869 2.22875 2.65689 3.28394 3.36674 3.39206 3.66397 3.87602 4.02872 4.43162 4.44230 4.71916 4.74229 4.79673 5.04547 5.12654 5.32823 5.33458 5.40667 5.51010 5.57138 5.58456 5.75216 5.88121 6.07417 6.15003 6.17015 6.21991 6.29436 6.36459 6.37574 6.47414 6.58271 6.62966 6.65325 7.02742 7.06196 7.08938 7.09867 7.20284 7.55863 7.59861 7.72527 7.95833 7.97536 8.38424 9.00963 9.59458 11.08459 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.046012 B = 0.002289 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.395593 B =12230.646403 C =12556.177567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.070 4.070 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.131 3.869 14 N -0.737 5.737 15 C 0.215 3.785 16 C -0.156 4.156 17 C -0.061 4.061 18 C -0.004 4.004 19 O -0.193 6.193 20 C 0.024 3.976 21 C 0.154 3.846 22 O -0.565 6.565 23 C -0.190 4.190 24 C -0.083 4.083 25 C -0.170 4.170 26 H 0.030 0.970 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.029 0.971 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.259 0.741 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.399 0.601 38 H 0.138 0.862 39 H 0.130 0.870 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.386 0.614 43 H 0.154 0.846 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.733 2.776 25.188 25.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.071 4.071 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.007 3.993 14 N -0.366 5.366 15 C 0.110 3.890 16 C -0.178 4.178 17 C -0.080 4.080 18 C -0.052 4.052 19 O -0.096 6.096 20 C -0.024 4.024 21 C 0.077 3.923 22 O -0.372 6.372 23 C -0.209 4.209 24 C -0.085 4.085 25 C -0.195 4.195 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.235 0.765 38 H 0.155 0.845 39 H 0.148 0.852 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.235 0.765 43 H 0.171 0.829 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.499 2.234 24.322 24.429 hybrid contribution -0.463 0.884 -0.477 1.107 sum -0.962 3.119 23.844 24.067 Atomic orbital electron populations 1.21747 0.95292 1.01110 1.00236 1.20854 0.95478 0.95848 0.94888 1.21746 1.00432 0.95955 1.00235 1.19102 0.96266 0.95194 0.89619 1.21223 1.31052 1.12035 0.90515 0.92226 1.25017 0.95327 0.95108 0.99126 1.69965 1.37060 1.23075 1.23347 0.86586 0.78614 0.79689 0.83404 1.19804 1.21133 1.21122 1.21616 0.98133 0.95804 0.83719 1.45022 1.56842 1.32830 1.01945 1.17674 0.93152 0.92516 0.85648 1.20574 1.02540 0.97839 0.96850 1.19646 1.00679 0.99874 0.87782 1.19336 1.04475 0.99104 0.82293 1.83883 1.62249 1.47631 1.15816 1.21700 0.97554 0.90176 0.92992 1.20363 0.90227 0.96233 0.85468 1.86587 1.49035 1.74209 1.27356 1.22216 1.05143 1.02895 0.90677 1.19512 0.99635 0.96065 0.93251 1.19731 1.07408 1.03309 0.89008 0.95148 0.91564 0.93430 0.93442 0.91561 0.95156 0.96402 0.96394 0.93098 0.92553 0.92558 0.76482 0.84453 0.85220 0.91509 0.90033 0.76515 0.82854 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 2 C -0.07 -1.30 0.54 -154.51 -0.08 -1.39 16 3 C -0.13 -2.23 8.05 37.15 0.30 -1.93 16 4 C 0.04 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.41 7.65 -34.44 -0.26 -13.68 16 6 H 0.06 1.52 5.68 -52.48 -0.30 1.23 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 9 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.13 2.12 3.80 -4.04 -0.02 2.11 16 14 N -0.74 -10.56 5.14 -58.60 -0.30 -10.86 16 15 C 0.22 3.08 6.65 -83.71 -0.56 2.52 16 16 C -0.16 -2.15 9.29 -39.35 -0.37 -2.52 16 17 C -0.06 -0.81 10.05 -39.50 -0.40 -1.21 16 18 C 0.00 -0.06 7.41 -38.49 -0.29 -0.35 16 19 O -0.19 -2.74 10.59 3.60 0.04 -2.70 16 20 C 0.02 0.28 6.86 -35.80 -0.25 0.04 16 21 C 0.15 1.12 7.54 36.01 0.27 1.39 16 22 O -0.56 -4.50 13.64 -35.23 -0.48 -4.99 16 23 C -0.19 -2.28 11.01 -37.61 -0.41 -2.70 16 24 C -0.08 -1.18 6.39 -105.16 -0.67 -1.85 16 25 C -0.17 -2.35 9.94 -39.10 -0.39 -2.74 16 26 H 0.03 0.45 6.86 -51.93 -0.36 0.10 16 27 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 31 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.06 0.92 7.94 -51.93 -0.41 0.51 16 36 H 0.06 0.93 7.94 -51.93 -0.41 0.52 16 37 H 0.40 5.37 6.17 -40.82 -0.25 5.12 16 38 H 0.14 1.78 6.70 -52.49 -0.35 1.43 16 39 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.39 0.85 9.12 45.56 0.42 1.27 16 43 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 44 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 LS Contribution 358.09 15.07 5.40 5.40 Total: -1.00 -32.01 358.09 -8.31 -40.32 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.65 Total: 4.16 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -3.03 Total: -22.08 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.44 Total: -36.21 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.44 Total: -7.68 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.01 -8.31 -40.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603433800.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.799 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds