Wall clock time and date at job start Tue Mar 31 2020 10:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47120 * 2 1 4 4 C 1.53006 * 109.46925 * 240.00057 * 2 1 3 5 5 C 1.50698 * 109.46949 * 60.00044 * 4 2 1 6 6 H 1.08004 * 120.00105 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00218 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99965 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00295 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47362 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47004 * 120.00555 * 9 7 5 12 12 H 1.48494 * 109.47427 * 240.00174 * 9 7 5 13 13 C 1.53003 * 109.46991 * 120.00476 * 2 1 3 14 14 N 1.46496 * 109.47036 * 299.99508 * 13 2 1 15 15 C 1.39924 * 120.00040 * 180.02562 * 14 13 2 16 16 C 1.39342 * 119.94408 * 359.97438 * 15 14 13 17 17 C 1.37749 * 120.62408 * 179.97438 * 16 15 14 18 18 C 1.38937 * 120.06035 * 0.28536 * 17 16 15 19 19 O 1.34944 * 133.31331 * 179.72121 * 18 17 16 20 20 C 1.34422 * 110.88579 * 179.97438 * 19 18 17 21 21 C 1.50706 * 124.92054 * 179.97438 * 20 19 18 22 22 O 1.42903 * 109.46857 * 269.97481 * 21 20 19 23 23 C 1.34000 * 110.15682 * 359.46728 * 20 19 18 24 24 C 1.40447 * 119.44124 * 359.47359 * 18 17 16 25 25 C 1.38345 * 119.94476 * 180.02562 * 15 14 13 26 26 H 1.09001 * 109.46638 * 299.99769 * 1 2 3 27 27 H 1.08997 * 109.47086 * 59.99785 * 1 2 3 28 28 H 1.08996 * 109.47089 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46806 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47316 * 300.00074 * 3 2 1 31 31 H 1.09001 * 109.47176 * 60.00561 * 3 2 1 32 32 H 1.08997 * 109.47057 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.47313 * 300.00325 * 4 2 1 34 34 H 0.96994 * 120.00402 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.46786 * 179.97438 * 13 2 1 36 36 H 1.09004 * 109.47169 * 59.99723 * 13 2 1 37 37 H 0.97001 * 120.00300 * 0.02562 * 14 13 2 38 38 H 1.07996 * 119.68810 * 359.97438 * 16 15 14 39 39 H 1.08002 * 119.96754 * 180.02562 * 17 16 15 40 40 H 1.08998 * 109.47073 * 29.97500 * 21 20 19 41 41 H 1.09000 * 109.46861 * 149.97612 * 21 20 19 42 42 H 0.96703 * 113.99542 * 179.97438 * 22 21 20 43 43 H 1.07999 * 126.90689 * 179.97438 * 23 20 19 44 44 H 1.08003 * 120.22648 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6271 -1.5508 -3.8528 9 14 1.2478 0.3987 -5.2571 10 1 0.4224 1.5651 -4.8530 11 1 2.4025 0.8662 -6.0655 12 1 0.4235 -0.5351 -6.0656 13 6 2.0400 -0.7214 1.2492 14 7 1.5518 -0.0308 2.4454 15 6 1.8902 -0.5086 3.7162 16 6 2.6913 -1.6417 3.8427 17 6 3.0334 -2.1239 5.0868 18 6 2.5749 -1.4838 6.2315 19 8 2.7348 -1.7190 7.5507 20 6 2.0821 -0.8006 8.2838 21 6 2.0484 -0.7642 9.7900 22 8 0.9371 -1.5297 10.2602 23 6 1.4747 0.0842 7.4813 24 6 1.7715 -0.3385 6.1072 25 6 1.4280 0.1441 4.8451 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 3.1300 -0.7209 -1.2496 33 1 1.6766 -1.7490 -1.2494 34 1 2.8614 -1.8822 -4.7337 35 1 3.1300 -0.7218 1.2490 36 1 1.6766 -1.7491 1.2492 37 1 0.9938 0.7577 2.3565 38 1 3.0473 -2.1466 2.9569 39 1 3.6553 -3.0027 5.1725 40 1 2.9729 -1.1858 10.1844 41 1 1.9472 0.2677 10.1263 42 1 0.8534 -1.5507 11.2234 43 1 0.8775 0.9314 7.7845 44 1 0.8067 1.0223 4.7492 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603433800.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:03 Heat of formation + Delta-G solvation = -53.129745 kcal Electronic energy + Delta-G solvation = -23770.747972 eV Core-core repulsion = 20267.061992 eV Total energy + Delta-G solvation = -3503.685980 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.30572 -40.04811 -38.47143 -37.73252 -35.33528 -34.06821 -33.78538 -31.19960 -30.24557 -28.83403 -27.95882 -27.10669 -26.97199 -24.75701 -23.53432 -22.34536 -21.80833 -19.73651 -18.60838 -18.52927 -18.35265 -18.14305 -17.14028 -16.82798 -16.51473 -15.88221 -15.74559 -15.58984 -15.13793 -14.94251 -14.55262 -14.37700 -14.34456 -14.08207 -13.94317 -13.90621 -13.37957 -13.34294 -12.87885 -12.79159 -12.68910 -12.56289 -12.33460 -12.23197 -11.95864 -11.81850 -11.54394 -11.09837 -11.08637 -10.97124 -10.82470 -10.73150 -10.51276 -9.19277 -8.20240 -8.14382 -6.20974 -0.09050 0.58939 1.32129 1.40405 1.42186 1.53258 1.78469 2.41438 2.53389 2.81771 3.20235 3.33343 3.75214 3.86225 4.00583 4.08823 4.12705 4.14105 4.20936 4.27071 4.31843 4.44853 4.54922 4.61816 4.73052 4.77054 4.77515 4.93829 4.98657 5.08222 5.12639 5.17507 5.28626 5.31707 5.44172 5.50497 5.51727 5.52815 5.55258 5.59241 5.82208 5.90861 6.18106 6.31136 6.42972 6.87550 6.88262 6.94445 7.46343 8.97940 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.046012 B = 0.002289 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.395593 B =12230.646403 C =12556.177567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.121 4.121 4 C 0.041 3.959 5 C -0.513 4.513 6 H 0.068 0.932 7 C -0.005 4.005 8 N -0.936 5.936 9 Si 0.955 3.045 10 H -0.260 1.260 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.145 3.855 14 N -0.732 5.732 15 C 0.205 3.795 16 C -0.168 4.168 17 C -0.063 4.063 18 C -0.028 4.028 19 O -0.210 6.210 20 C 0.016 3.984 21 C 0.155 3.845 22 O -0.590 6.590 23 C -0.200 4.200 24 C -0.100 4.100 25 C -0.171 4.171 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.038 0.962 29 H 0.039 0.961 30 H 0.050 0.950 31 H 0.063 0.937 32 H -0.010 1.010 33 H -0.010 1.010 34 H 0.259 0.741 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.405 0.595 38 H 0.140 0.860 39 H 0.147 0.853 40 H 0.082 0.918 41 H 0.116 0.884 42 H 0.410 0.590 43 H 0.180 0.820 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.747 4.453 27.159 27.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.064 4.064 3 C -0.178 4.178 4 C 0.003 3.997 5 C -0.551 4.551 6 H 0.086 0.914 7 C -0.202 4.202 8 N -0.577 5.577 9 Si 0.781 3.219 10 H -0.184 1.184 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.021 3.979 14 N -0.363 5.363 15 C 0.100 3.900 16 C -0.190 4.190 17 C -0.082 4.082 18 C -0.075 4.075 19 O -0.113 6.113 20 C -0.031 4.031 21 C 0.078 3.922 22 O -0.401 6.401 23 C -0.219 4.219 24 C -0.101 4.101 25 C -0.195 4.195 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.009 0.991 33 H 0.008 0.992 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.242 0.758 38 H 0.157 0.843 39 H 0.165 0.835 40 H 0.100 0.900 41 H 0.134 0.866 42 H 0.263 0.737 43 H 0.197 0.803 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.529 3.929 26.341 26.676 hybrid contribution -0.134 0.325 -0.943 1.006 sum -1.663 4.254 25.398 25.806 Atomic orbital electron populations 1.21674 0.94246 1.00850 1.01058 1.20662 0.96211 0.96112 0.93420 1.21671 0.99952 0.95113 1.01064 1.18973 0.94456 0.94244 0.92024 1.21625 1.30225 1.11942 0.91313 0.91433 1.25901 0.95772 0.95932 1.02552 1.70102 1.38770 1.24842 1.23981 0.85536 0.78057 0.78796 0.79495 1.18422 1.21012 1.21030 1.21263 0.97738 0.95333 0.83574 1.44747 1.57249 1.32987 1.01276 1.17772 0.93671 0.92917 0.85622 1.20687 1.02950 0.98132 0.97193 1.19862 1.00554 1.00307 0.87464 1.19653 1.05186 0.99797 0.82877 1.83882 1.62928 1.48684 1.15768 1.22671 0.96240 0.89141 0.95061 1.20616 0.90770 0.98261 0.82528 1.86506 1.49259 1.74567 1.29817 1.22572 1.05781 1.03986 0.89581 1.19894 0.99631 0.96181 0.94423 1.19908 1.07273 1.03673 0.88642 0.91867 0.93092 0.94267 0.94198 0.93102 0.91849 0.99122 0.99172 0.93179 0.93046 0.93161 0.75751 0.84261 0.83498 0.89998 0.86649 0.73735 0.80285 0.84246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.15 8.05 71.98 0.58 -3.57 16 2 C -0.06 -2.34 0.54 -52.18 -0.03 -2.37 16 3 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 4 C 0.04 2.00 4.04 29.85 0.12 2.12 16 5 C -0.51 -27.31 7.65 25.60 0.20 -27.11 16 6 H 0.07 3.43 5.68 -2.91 -0.02 3.41 16 7 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 8 N -0.94 -56.01 13.29 21.45 0.28 -55.73 16 9 Si 0.96 43.60 29.54 68.60 2.03 45.62 16 10 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 13 C 0.15 4.67 3.80 86.38 0.33 5.00 16 14 N -0.73 -19.86 5.14 -339.31 -1.74 -21.61 16 15 C 0.20 5.64 6.65 38.14 0.25 5.89 16 16 C -0.17 -4.59 9.29 22.42 0.21 -4.38 16 17 C -0.06 -1.67 10.05 22.32 0.22 -1.44 16 18 C -0.03 -0.79 7.41 22.98 0.17 -0.62 16 19 O -0.21 -5.78 10.59 -10.05 -0.11 -5.89 16 20 C 0.02 0.36 6.86 24.72 0.17 0.53 16 21 C 0.16 1.82 7.54 71.24 0.54 2.36 16 22 O -0.59 -7.97 13.64 -148.98 -2.03 -10.00 16 23 C -0.20 -4.43 11.01 23.54 0.26 -4.17 16 24 C -0.10 -2.72 6.39 -20.22 -0.13 -2.85 16 25 C -0.17 -4.46 9.94 22.58 0.22 -4.23 16 26 H 0.06 1.74 6.86 -2.39 -0.02 1.73 16 27 H 0.05 1.89 6.62 -2.39 -0.02 1.88 16 28 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 1.88 6.62 -2.39 -0.02 1.86 16 31 H 0.06 1.73 6.86 -2.39 -0.02 1.72 16 32 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 33 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 34 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 35 H 0.05 1.70 7.94 -2.39 -0.02 1.68 16 36 H 0.05 1.68 7.94 -2.38 -0.02 1.66 16 37 H 0.41 9.86 6.17 -92.71 -0.57 9.28 16 38 H 0.14 3.65 6.70 -2.91 -0.02 3.63 16 39 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 40 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.41 0.72 9.12 -74.06 -0.68 0.04 16 43 H 0.18 2.83 8.06 -2.91 -0.02 2.80 16 44 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -70.23 358.09 2.36 -67.87 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -0.22 Total: 17.91 kcal Atomic # 6 Polarization: -42.33 SS G_CDS: 4.16 Total: -38.18 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -1.46 Total: -77.34 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -2.14 Total: -15.89 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -70.23 2.36 -67.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603433800.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.742 kcal (2) G-P(sol) polarization free energy of solvation -70.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds