Wall clock time and date at job start Tue Mar 31 2020 10:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47334 * 2 1 4 4 C 1.50698 * 109.47037 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00317 * 275.00152 * 4 3 2 6 6 C 1.32998 * 119.99964 * 95.00001 * 4 3 2 7 7 C 1.47105 * 119.99864 * 184.45869 * 6 4 3 8 8 O 1.21609 * 119.99865 * 354.32848 * 7 6 4 9 9 N 1.34777 * 119.99854 * 174.33171 * 7 6 4 10 10 C 1.46498 * 120.00066 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47056 * 179.97438 * 10 9 7 12 12 C 1.38293 * 119.93319 * 269.72633 * 11 10 9 13 13 C 1.38099 * 120.06838 * 179.72444 * 12 11 10 14 14 C 1.38879 * 119.93284 * 0.57103 * 13 12 11 15 15 O 1.35747 * 120.06951 * 179.67982 * 14 13 12 16 16 C 1.34836 * 116.99801 * 174.23497 * 15 14 13 17 17 H 1.08005 * 119.99879 * 5.08519 * 16 15 14 18 18 C 1.38656 * 119.99932 * 185.08502 * 16 15 14 19 19 N 1.31551 * 120.00006 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99946 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46768 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47138 * 119.99485 * 20 18 16 23 23 H 1.48493 * 109.46846 * 240.00037 * 20 18 16 24 24 C 1.38880 * 119.85941 * 359.70651 * 14 13 12 25 25 C 1.38099 * 119.93223 * 359.97438 * 24 14 13 26 26 H 1.08995 * 109.46762 * 300.00004 * 1 2 3 27 27 H 1.09002 * 109.46575 * 60.00134 * 1 2 3 28 28 H 1.09000 * 109.47063 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47330 * 239.99654 * 2 1 3 30 30 H 1.09000 * 109.47060 * 120.00054 * 2 1 3 31 31 H 1.09003 * 109.46933 * 60.00052 * 3 2 1 32 32 H 1.09000 * 109.47092 * 300.00035 * 3 2 1 33 33 H 1.09005 * 109.47160 * 243.99557 * 5 4 3 34 34 H 1.09003 * 109.46916 * 3.98400 * 5 4 3 35 35 H 1.08994 * 109.47820 * 123.98815 * 5 4 3 36 36 H 1.08002 * 120.00016 * 4.45803 * 6 4 3 37 37 H 0.97005 * 120.00026 * 359.97438 * 9 7 6 38 38 H 1.08997 * 109.46935 * 300.00055 * 10 9 7 39 39 H 1.09002 * 109.47218 * 59.99834 * 10 9 7 40 40 H 1.08004 * 119.96403 * 359.97438 * 12 11 10 41 41 H 1.08004 * 120.03595 * 180.26865 * 13 12 11 42 42 H 0.97004 * 120.00190 * 180.02562 * 19 18 16 43 43 H 1.08001 * 120.03598 * 179.97438 * 24 14 13 44 44 H 1.07994 * 119.96983 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3001 1.3288 1.3011 6 6 4.2125 1.5426 -1.1465 7 6 5.6802 1.4440 -1.1564 8 8 6.2920 1.3746 -0.1077 9 7 6.3468 1.4307 -2.3277 10 6 7.8084 1.3320 -2.3376 11 6 8.3026 1.3366 -3.7613 12 6 8.4533 0.1430 -4.4433 13 6 8.9004 0.1443 -5.7499 14 6 9.2102 1.3451 -6.3751 15 8 9.6562 1.3492 -7.6572 16 6 9.8244 2.5520 -8.2430 17 1 9.6856 3.4563 -7.6690 18 6 10.1753 2.6278 -9.5822 19 7 10.3448 1.5263 -10.2812 20 14 10.4090 4.2942 -10.3936 21 1 10.1621 5.3682 -9.3983 22 1 11.7980 4.4043 -10.9071 23 1 9.4520 4.4346 -11.5203 24 6 9.0633 2.5417 -5.6856 25 6 8.6094 2.5342 -4.3814 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 4.8719 2.2411 1.4707 34 1 3.5935 1.1857 2.1187 35 1 4.9792 0.4776 1.2546 36 1 3.6754 1.6963 -2.0708 37 1 5.8587 1.4857 -3.1642 38 1 8.2336 2.1809 -1.8023 39 1 8.1134 0.4057 -1.8506 40 1 8.2171 -0.7909 -3.9549 41 1 9.0138 -0.7879 -6.2835 42 1 10.5907 1.5794 -11.2181 43 1 9.3038 3.4771 -6.1689 44 1 8.4945 3.4644 -3.8448 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727674820.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:50 Heat of formation + Delta-G solvation = -46.304673 kcal Electronic energy + Delta-G solvation = -23051.393211 eV Core-core repulsion = 19548.003189 eV Total energy + Delta-G solvation = -3503.390022 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.85281 -39.06973 -37.14513 -36.57052 -34.39595 -33.02565 -32.37764 -30.32664 -30.13718 -27.86385 -27.34666 -25.79381 -24.62739 -22.31162 -22.05724 -20.94719 -20.61146 -18.85035 -18.07580 -17.16010 -16.90527 -15.93331 -15.35789 -15.18669 -14.78159 -14.62001 -14.54105 -14.17544 -13.87237 -13.71902 -13.68352 -13.39339 -13.23202 -12.86914 -12.79035 -12.54553 -12.13639 -12.02815 -11.83514 -11.67782 -11.62230 -11.57628 -11.39324 -11.01009 -10.96076 -10.78503 -10.68495 -10.48360 -9.58071 -9.43085 -9.36464 -8.91718 -8.78914 -8.28955 -7.32902 -6.53635 -4.12504 1.27992 2.07787 2.12571 3.06804 3.09012 3.14655 3.31975 3.51623 3.89819 4.40687 4.50657 4.56296 4.69758 4.82228 5.00496 5.01237 5.12214 5.16841 5.23038 5.30491 5.39236 5.43126 5.43354 5.48873 5.66165 5.67087 5.72883 5.76411 5.80849 5.91255 5.92716 5.97683 6.11911 6.34679 6.36019 6.38337 6.58030 6.62018 6.80128 6.95625 7.14104 7.27225 7.34709 7.68400 7.72973 7.91226 8.35356 8.91855 9.60162 10.63979 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.022132 B = 0.002202 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.834856 B =12711.346610 C =13090.827917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.092 4.092 4 C -0.035 4.035 5 C -0.115 4.115 6 C -0.229 4.229 7 C 0.539 3.461 8 O -0.550 6.550 9 N -0.719 5.719 10 C 0.180 3.820 11 C -0.214 4.214 12 C -0.055 4.055 13 C -0.195 4.195 14 C 0.160 3.840 15 O -0.174 6.174 16 C -0.393 4.393 17 H 0.094 0.906 18 C 0.040 3.960 19 N -0.859 5.859 20 Si 0.942 3.058 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.237 4.237 25 C -0.051 4.051 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.401 0.599 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.271 0.729 43 H 0.128 0.872 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.191 -0.125 17.278 23.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.129 4.129 4 C -0.037 4.037 5 C -0.171 4.171 6 C -0.249 4.249 7 C 0.329 3.671 8 O -0.431 6.431 9 N -0.370 5.370 10 C 0.058 3.942 11 C -0.215 4.215 12 C -0.074 4.074 13 C -0.215 4.215 14 C 0.106 3.894 15 O -0.077 6.077 16 C -0.469 4.469 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.494 5.494 20 Si 0.767 3.233 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.256 4.256 25 C -0.070 4.070 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.142 0.858 37 H 0.236 0.764 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.130 0.870 41 H 0.136 0.864 42 H 0.081 0.919 43 H 0.146 0.854 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.589 -0.419 17.593 22.859 hybrid contribution -0.061 0.945 -1.059 1.421 sum -14.650 0.526 16.534 22.097 Atomic orbital electron populations 1.21785 0.95447 1.01865 1.01905 1.21476 0.95853 0.95600 1.02722 1.20856 0.90901 0.97895 1.03277 1.22521 0.95359 0.90375 0.95438 1.21023 0.99035 1.04276 0.92760 1.22453 0.93413 1.10094 0.98984 1.18586 0.88047 0.76744 0.83708 1.90751 1.70247 1.50742 1.31366 1.46245 1.08089 1.74240 1.08409 1.19952 0.78844 1.01571 0.93879 1.19226 1.12621 0.93777 0.95889 1.20531 0.96969 0.96625 0.93228 1.20219 1.09214 0.96423 0.95598 1.19437 0.90658 0.93331 0.86023 1.83980 1.70832 1.32626 1.20213 1.21407 1.48911 0.82781 0.93806 0.88871 1.25325 0.96450 0.99449 0.95299 1.70044 1.43149 1.27246 1.08928 0.85625 0.78403 0.79996 0.79292 1.19043 1.20065 1.20066 1.21163 1.10073 0.98623 0.95741 1.20646 0.95981 0.96418 0.93964 0.92684 0.92581 0.92533 0.91571 0.91648 0.90570 0.90728 0.90230 0.93229 0.89643 0.85798 0.76416 0.91676 0.91663 0.86980 0.86375 0.91932 0.85416 0.87410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.12 -0.78 5.92 -26.73 -0.16 -0.93 16 3 C -0.09 -0.64 5.31 -27.88 -0.15 -0.78 16 4 C -0.04 -0.33 5.36 -101.17 -0.54 -0.87 16 5 C -0.11 -1.16 8.36 36.01 0.30 -0.86 16 6 C -0.23 -2.39 9.63 -37.80 -0.36 -2.75 16 7 C 0.54 7.21 7.72 -12.66 -0.10 7.11 16 8 O -0.55 -8.81 13.10 5.27 0.07 -8.74 16 9 N -0.72 -9.26 5.54 -62.67 -0.35 -9.61 16 10 C 0.18 2.56 5.80 -5.19 -0.03 2.53 16 11 C -0.21 -3.46 5.25 -104.57 -0.55 -4.01 16 12 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 13 C -0.20 -3.95 9.99 -39.40 -0.39 -4.34 16 14 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 15 O -0.17 -4.83 9.76 0.04 0.00 -4.83 16 16 C -0.39 -10.70 9.49 30.89 0.29 -10.40 16 17 H 0.09 2.34 5.21 -52.48 -0.27 2.07 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -24.68 13.67 55.48 0.76 -23.92 16 20 Si 0.94 20.05 29.55 -169.99 -5.02 15.02 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 24 C -0.24 -4.93 9.17 -39.39 -0.36 -5.29 16 25 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 26 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.47 8.00 -51.93 -0.42 0.06 16 33 H 0.08 0.90 7.58 -51.93 -0.39 0.51 16 34 H 0.05 0.39 8.01 -51.93 -0.42 -0.02 16 35 H 0.09 1.02 6.84 -51.93 -0.35 0.66 16 36 H 0.12 1.05 8.00 -52.49 -0.42 0.63 16 37 H 0.40 4.64 8.45 -40.82 -0.34 4.30 16 38 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 39 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 40 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 41 H 0.12 2.32 8.06 -52.48 -0.42 1.89 16 42 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.13 2.68 5.64 -52.49 -0.30 2.38 16 44 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 371.59 15.07 5.60 5.60 Total: -1.00 -30.57 371.59 -8.44 -39.01 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.69 Total: 6.69 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -2.81 Total: -19.22 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.41 Total: -33.53 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.07 Total: -13.57 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.57 -8.44 -39.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727674820.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.294 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds