Wall clock time and date at job start Tue Mar 31 2020 10:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47334 * 2 1 4 4 C 1.50698 * 109.47037 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00317 * 275.00152 * 4 3 2 6 6 C 1.32998 * 119.99964 * 95.00001 * 4 3 2 7 7 C 1.47105 * 119.99864 * 184.45869 * 6 4 3 8 8 O 1.21609 * 119.99865 * 354.32848 * 7 6 4 9 9 N 1.34777 * 119.99854 * 174.33171 * 7 6 4 10 10 C 1.46498 * 120.00066 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47056 * 179.97438 * 10 9 7 12 12 C 1.38293 * 119.93319 * 269.72633 * 11 10 9 13 13 C 1.38099 * 120.06838 * 179.72444 * 12 11 10 14 14 C 1.38879 * 119.93284 * 0.57103 * 13 12 11 15 15 O 1.35747 * 120.06951 * 179.67982 * 14 13 12 16 16 C 1.34836 * 116.99801 * 174.23497 * 15 14 13 17 17 H 1.08005 * 119.99879 * 5.08519 * 16 15 14 18 18 C 1.38656 * 119.99932 * 185.08502 * 16 15 14 19 19 N 1.31551 * 120.00006 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99946 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46768 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47138 * 119.99485 * 20 18 16 23 23 H 1.48493 * 109.46846 * 240.00037 * 20 18 16 24 24 C 1.38880 * 119.85941 * 359.70651 * 14 13 12 25 25 C 1.38099 * 119.93223 * 359.97438 * 24 14 13 26 26 H 1.08995 * 109.46762 * 300.00004 * 1 2 3 27 27 H 1.09002 * 109.46575 * 60.00134 * 1 2 3 28 28 H 1.09000 * 109.47063 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47330 * 239.99654 * 2 1 3 30 30 H 1.09000 * 109.47060 * 120.00054 * 2 1 3 31 31 H 1.09003 * 109.46933 * 60.00052 * 3 2 1 32 32 H 1.09000 * 109.47092 * 300.00035 * 3 2 1 33 33 H 1.09005 * 109.47160 * 243.99557 * 5 4 3 34 34 H 1.09003 * 109.46916 * 3.98400 * 5 4 3 35 35 H 1.08994 * 109.47820 * 123.98815 * 5 4 3 36 36 H 1.08002 * 120.00016 * 4.45803 * 6 4 3 37 37 H 0.97005 * 120.00026 * 359.97438 * 9 7 6 38 38 H 1.08997 * 109.46935 * 300.00055 * 10 9 7 39 39 H 1.09002 * 109.47218 * 59.99834 * 10 9 7 40 40 H 1.08004 * 119.96403 * 359.97438 * 12 11 10 41 41 H 1.08004 * 120.03595 * 180.26865 * 13 12 11 42 42 H 0.97004 * 120.00190 * 180.02562 * 19 18 16 43 43 H 1.08001 * 120.03598 * 179.97438 * 24 14 13 44 44 H 1.07994 * 119.96983 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3001 1.3288 1.3011 6 6 4.2125 1.5426 -1.1465 7 6 5.6802 1.4440 -1.1564 8 8 6.2920 1.3746 -0.1077 9 7 6.3468 1.4307 -2.3277 10 6 7.8084 1.3320 -2.3376 11 6 8.3026 1.3366 -3.7613 12 6 8.4533 0.1430 -4.4433 13 6 8.9004 0.1443 -5.7499 14 6 9.2102 1.3451 -6.3751 15 8 9.6562 1.3492 -7.6572 16 6 9.8244 2.5520 -8.2430 17 1 9.6856 3.4563 -7.6690 18 6 10.1753 2.6278 -9.5822 19 7 10.3448 1.5263 -10.2812 20 14 10.4090 4.2942 -10.3936 21 1 10.1621 5.3682 -9.3983 22 1 11.7980 4.4043 -10.9071 23 1 9.4520 4.4346 -11.5203 24 6 9.0633 2.5417 -5.6856 25 6 8.6094 2.5342 -4.3814 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 4.8719 2.2411 1.4707 34 1 3.5935 1.1857 2.1187 35 1 4.9792 0.4776 1.2546 36 1 3.6754 1.6963 -2.0708 37 1 5.8587 1.4857 -3.1642 38 1 8.2336 2.1809 -1.8023 39 1 8.1134 0.4057 -1.8506 40 1 8.2171 -0.7909 -3.9549 41 1 9.0138 -0.7879 -6.2835 42 1 10.5907 1.5794 -11.2181 43 1 9.3038 3.4771 -6.1689 44 1 8.4945 3.4644 -3.8448 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727674820.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:49 Heat of formation + Delta-G solvation = -63.824379 kcal Electronic energy + Delta-G solvation = -23052.152923 eV Core-core repulsion = 19548.003189 eV Total energy + Delta-G solvation = -3504.149734 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.05457 -40.58545 -38.59460 -37.46869 -35.61565 -34.28272 -33.67208 -31.86940 -31.56006 -28.86359 -27.96715 -27.52655 -26.02682 -23.66023 -22.98823 -22.18844 -21.74217 -19.93166 -19.70549 -18.84231 -17.95663 -16.94725 -16.62968 -16.33199 -15.99776 -15.98027 -15.71641 -15.52806 -15.35680 -15.02032 -14.59127 -14.46703 -14.37240 -14.18573 -13.98787 -13.65453 -13.44903 -13.14930 -13.04752 -12.70260 -12.55890 -12.52907 -12.36430 -12.23710 -12.20980 -12.09945 -12.09639 -11.48819 -11.21147 -10.85533 -10.58060 -10.27379 -9.84139 -9.76795 -9.01913 -8.49168 -6.17413 0.44615 0.53958 0.56139 1.35553 1.42899 1.53517 2.16354 2.33377 2.41273 2.86508 3.17067 3.47309 3.74584 3.86489 3.92047 4.01723 4.16029 4.18433 4.24112 4.29619 4.44606 4.55323 4.56121 4.69030 4.73843 4.79359 4.83446 4.85168 4.90071 5.02877 5.03584 5.13220 5.14054 5.24618 5.25124 5.27235 5.47606 5.49459 5.52318 5.61311 5.65105 5.67829 5.74020 6.00662 6.14524 6.68152 6.95694 7.33111 7.74789 8.73836 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.022132 B = 0.002202 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.834856 B =12711.346610 C =13090.827917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.088 4.088 4 C -0.024 4.024 5 C -0.114 4.114 6 C -0.242 4.242 7 C 0.536 3.464 8 O -0.581 6.581 9 N -0.715 5.715 10 C 0.186 3.814 11 C -0.182 4.182 12 C -0.045 4.045 13 C -0.204 4.204 14 C 0.122 3.878 15 O -0.229 6.229 16 C -0.413 4.413 17 H 0.104 0.896 18 C -0.023 4.023 19 N -0.919 5.919 20 Si 1.019 2.981 21 H -0.251 1.251 22 H -0.270 1.270 23 H -0.268 1.268 24 C -0.243 4.243 25 C -0.047 4.047 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.146 0.854 37 H 0.410 0.590 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.146 0.854 41 H 0.116 0.884 42 H 0.273 0.727 43 H 0.121 0.879 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.294 0.977 19.622 26.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.126 4.126 4 C -0.026 4.026 5 C -0.170 4.170 6 C -0.263 4.263 7 C 0.328 3.672 8 O -0.464 6.464 9 N -0.366 5.366 10 C 0.063 3.937 11 C -0.183 4.183 12 C -0.063 4.063 13 C -0.223 4.223 14 C 0.071 3.929 15 O -0.135 6.135 16 C -0.489 4.489 17 H 0.121 0.879 18 C -0.220 4.220 19 N -0.556 5.556 20 Si 0.838 3.162 21 H -0.174 1.174 22 H -0.195 1.195 23 H -0.193 1.193 24 C -0.262 4.262 25 C -0.065 4.065 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.163 0.837 37 H 0.245 0.755 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.164 0.836 41 H 0.134 0.866 42 H 0.082 0.918 43 H 0.138 0.862 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.725 0.681 19.988 26.071 hybrid contribution 0.454 0.488 -1.366 1.520 sum -16.271 1.169 18.622 24.756 Atomic orbital electron populations 1.21773 0.94536 1.02164 1.02381 1.21462 0.96606 0.95162 1.02323 1.20900 0.88815 0.98373 1.04462 1.22778 0.96786 0.88387 0.94679 1.20969 0.99163 1.02682 0.94198 1.22492 0.91719 1.11669 1.00402 1.19040 0.89205 0.75908 0.83084 1.90748 1.71098 1.52204 1.32350 1.46091 1.07365 1.74256 1.08916 1.19843 0.79842 1.02144 0.91900 1.19509 1.09272 0.93003 0.96481 1.20872 0.95172 0.98497 0.91750 1.20452 1.09393 0.95544 0.96939 1.19984 0.92160 0.95373 0.85350 1.83950 1.74013 1.33104 1.22436 1.21875 1.49184 0.83311 0.94540 0.87904 1.26595 0.95972 1.03798 0.95674 1.70183 1.46040 1.29996 1.09428 0.84524 0.78486 0.74918 0.78266 1.17414 1.19460 1.19325 1.21244 1.10421 0.97529 0.97035 1.20937 0.94655 0.98306 0.92620 0.92028 0.92297 0.92386 0.92235 0.91874 0.89297 0.89684 0.91650 0.91016 0.91613 0.83652 0.75454 0.91352 0.91133 0.83590 0.86620 0.91786 0.86162 0.84405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 71.98 0.71 -0.55 16 2 C -0.12 -1.24 5.92 30.59 0.18 -1.06 16 3 C -0.09 -0.95 5.31 29.85 0.16 -0.79 16 4 C -0.02 -0.40 5.36 -17.62 -0.09 -0.49 16 5 C -0.11 -2.11 8.36 71.24 0.60 -1.52 16 6 C -0.24 -4.44 9.63 23.43 0.23 -4.21 16 7 C 0.54 13.10 7.72 86.57 0.67 13.77 16 8 O -0.58 -17.70 13.10 -4.06 -0.05 -17.75 16 9 N -0.72 -16.27 5.54 -470.45 -2.61 -18.87 16 10 C 0.19 4.67 5.80 85.63 0.50 5.17 16 11 C -0.18 -5.34 5.25 -19.83 -0.10 -5.44 16 12 C -0.04 -1.40 9.69 22.25 0.22 -1.19 16 13 C -0.20 -8.27 9.99 22.39 0.22 -8.05 16 14 C 0.12 5.86 6.65 22.58 0.15 6.01 16 15 O -0.23 -13.45 9.76 -22.77 -0.22 -13.67 16 16 C -0.41 -23.51 9.49 67.92 0.64 -22.87 16 17 H 0.10 5.36 5.21 -2.91 -0.02 5.34 16 18 C -0.02 -1.26 5.49 84.83 0.47 -0.80 16 19 N -0.92 -55.53 13.67 21.61 0.30 -55.24 16 20 Si 1.02 42.04 29.55 68.60 2.03 44.07 16 21 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 22 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 23 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 24 C -0.24 -10.10 9.17 22.39 0.21 -9.89 16 25 C -0.05 -1.52 9.69 22.25 0.22 -1.30 16 26 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 0.78 8.00 -2.39 -0.02 0.76 16 33 H 0.06 1.41 7.58 -2.38 -0.02 1.39 16 34 H 0.07 0.97 8.01 -2.39 -0.02 0.95 16 35 H 0.07 1.50 6.84 -2.39 -0.02 1.49 16 36 H 0.15 1.99 8.00 -2.91 -0.02 1.97 16 37 H 0.41 8.13 8.45 -92.70 -0.78 7.35 16 38 H 0.07 1.75 8.08 -2.39 -0.02 1.73 16 39 H 0.07 1.77 8.08 -2.39 -0.02 1.76 16 40 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 41 H 0.12 4.66 8.06 -2.91 -0.02 4.63 16 42 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 43 H 0.12 5.11 5.64 -2.91 -0.02 5.10 16 44 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -70.50 371.59 4.61 -65.89 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: 0.21 Total: 28.76 kcal Atomic # 6 Polarization: -38.15 SS G_CDS: 4.96 Total: -33.19 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -2.31 Total: -74.11 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.28 Total: -31.42 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -70.50 4.61 -65.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727674820.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.065 kcal (2) G-P(sol) polarization free energy of solvation -70.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds