Wall clock time and date at job start Tue Mar 31 2020 09:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47068 * 2 1 4 4 N 1.46504 * 109.47416 * 240.00119 * 2 1 3 5 5 C 1.34783 * 119.99508 * 59.99716 * 4 2 1 6 6 O 1.21276 * 120.00311 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99725 * 180.02562 * 5 4 2 8 8 C 1.50699 * 109.47069 * 179.97438 * 7 5 4 9 9 C 1.38302 * 119.93257 * 269.72594 * 8 7 5 10 10 C 1.38095 * 120.07208 * 179.72642 * 9 8 7 11 11 C 1.38887 * 119.92770 * 0.56998 * 10 9 8 12 12 O 1.35741 * 120.07140 * 179.68223 * 11 10 9 13 13 C 1.34833 * 117.00173 * 174.48686 * 12 11 10 14 14 H 1.07997 * 119.99691 * 5.06096 * 13 12 11 15 15 C 1.38651 * 119.99982 * 185.05689 * 13 12 11 16 16 N 1.31557 * 120.00309 * 180.02562 * 15 13 12 17 17 Si 1.86808 * 120.00256 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.46799 * 89.99628 * 17 15 13 19 19 H 1.48491 * 109.47347 * 209.99996 * 17 15 13 20 20 H 1.48500 * 109.46971 * 330.00148 * 17 15 13 21 21 C 1.38883 * 119.85840 * 359.70799 * 11 10 9 22 22 C 1.38099 * 119.93203 * 359.97438 * 21 11 10 23 23 C 1.53000 * 109.47301 * 120.00038 * 2 1 3 24 24 C 1.52999 * 117.51703 * 236.28305 * 23 2 1 25 25 C 1.52994 * 117.49830 * 304.91310 * 23 2 1 26 26 H 1.09003 * 109.46744 * 299.99695 * 1 2 3 27 27 H 1.09004 * 109.47194 * 60.00094 * 1 2 3 28 28 H 1.08999 * 109.46919 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47255 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47368 * 299.99680 * 3 2 1 31 31 H 1.08995 * 109.47376 * 60.00363 * 3 2 1 32 32 H 0.96994 * 120.00179 * 240.00415 * 4 2 1 33 33 H 1.09001 * 109.47200 * 300.00537 * 7 5 4 34 34 H 1.09003 * 109.46765 * 60.00158 * 7 5 4 35 35 H 1.08009 * 119.96119 * 359.97438 * 9 8 7 36 36 H 1.07994 * 120.04079 * 180.27419 * 10 9 8 37 37 H 0.96993 * 120.00476 * 179.97438 * 16 15 13 38 38 H 1.07998 * 120.03063 * 179.97438 * 21 11 10 39 39 H 1.08002 * 119.96149 * 180.02562 * 22 21 11 40 40 H 1.08999 * 115.54692 * 90.58567 * 23 2 1 41 41 H 1.09000 * 117.49706 * 214.97142 * 24 23 2 42 42 H 1.08998 * 117.50277 * 359.97438 * 24 23 2 43 43 H 1.09005 * 117.50099 * 359.97369 * 25 23 2 44 44 H 1.08994 * 117.50158 * 145.00072 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 1.6927 -0.2300 -2.4203 6 8 0.9958 0.7562 -2.5316 7 6 2.1946 -0.9407 -3.6508 8 6 1.6918 -0.2306 -4.8812 9 6 0.4857 -0.6012 -5.4475 10 6 0.0195 0.0513 -6.5717 11 6 0.7689 1.0729 -7.1406 12 8 0.3165 1.7120 -8.2495 13 6 1.0344 2.7676 -8.6834 14 1 1.9684 3.0194 -8.2032 15 6 0.5736 3.5295 -9.7462 16 7 1.2743 4.5592 -10.1700 17 14 -1.0422 3.0942 -10.5764 18 1 -2.1540 3.8119 -9.9026 19 1 -0.9883 3.4949 -12.0053 20 1 -1.2688 1.6297 -10.4812 21 6 1.9824 1.4389 -6.5730 22 6 2.4400 0.7868 -5.4449 23 6 2.0400 -0.7212 1.2492 24 6 2.9858 0.0485 2.1733 25 6 1.5432 -0.2200 2.6067 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.5760 -1.4792 -1.1072 33 1 3.2846 -0.9412 -3.6509 34 1 1.8309 -1.9683 -3.6506 35 1 -0.0941 -1.3992 -5.0076 36 1 -0.9245 -0.2355 -7.0108 37 1 0.9522 5.0920 -10.9137 38 1 2.5677 2.2326 -7.0134 39 1 3.3834 1.0713 -5.0028 40 1 2.2062 -1.7928 1.1384 41 1 3.7741 -0.5166 2.6704 42 1 3.2452 1.0689 1.8911 43 1 0.8533 0.6240 2.6098 44 1 1.3826 -0.9616 3.3890 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741609937.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:03 Heat of formation + Delta-G solvation = -14.623729 kcal Electronic energy + Delta-G solvation = -24170.568589 eV Core-core repulsion = 20668.552356 eV Total energy + Delta-G solvation = -3502.016234 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.42508 -39.14896 -38.20655 -36.58851 -34.43503 -32.52354 -31.97143 -30.53399 -30.16730 -27.55147 -26.81161 -24.99575 -24.12849 -22.55192 -22.04525 -21.04033 -19.84492 -19.35655 -17.83826 -17.49382 -17.15008 -16.50180 -15.32195 -15.16091 -14.79457 -14.66660 -14.38071 -13.97434 -13.81187 -13.68638 -13.47968 -13.38140 -12.91866 -12.66386 -12.56581 -12.29380 -12.19607 -12.11983 -11.76834 -11.63573 -11.26141 -11.18564 -11.04787 -10.91463 -10.76871 -10.70586 -10.62460 -10.46074 -10.11403 -9.43498 -9.33332 -9.05847 -8.81270 -8.17771 -7.24766 -6.37126 -4.03408 2.21383 2.21692 2.81190 3.10361 3.25405 3.29535 3.43796 3.50071 4.25368 4.27845 4.50570 4.56101 4.63377 4.76781 4.87650 4.91303 5.06453 5.14631 5.16069 5.26951 5.30341 5.32087 5.50178 5.54204 5.56735 5.66326 5.71612 5.74874 5.77702 5.77863 5.81283 5.84136 6.18699 6.22193 6.26453 6.38948 6.56266 6.62538 6.85351 7.08310 7.28206 7.36546 7.55565 7.68037 7.85679 8.09082 8.39843 8.98420 9.61582 10.70700 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.030613 B = 0.002637 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.437360 B =10617.337661 C =10748.191129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.206 3.794 3 C -0.167 4.167 4 N -0.732 5.732 5 C 0.512 3.488 6 O -0.516 6.516 7 C -0.083 4.083 8 C -0.159 4.159 9 C -0.062 4.062 10 C -0.191 4.191 11 C 0.162 3.838 12 O -0.219 6.219 13 C -0.388 4.388 14 H 0.106 0.894 15 C 0.062 3.938 16 N -0.881 5.881 17 Si 0.905 3.095 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.260 1.260 21 C -0.219 4.219 22 C -0.058 4.058 23 C -0.159 4.159 24 C -0.181 4.181 25 C -0.170 4.170 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.396 0.604 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.279 0.721 38 H 0.132 0.868 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.053 -13.107 22.798 26.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.120 3.880 3 C -0.224 4.224 4 N -0.385 5.385 5 C 0.299 3.701 6 O -0.390 6.390 7 C -0.123 4.123 8 C -0.160 4.160 9 C -0.080 4.080 10 C -0.210 4.210 11 C 0.110 3.890 12 O -0.124 6.124 13 C -0.464 4.464 14 H 0.124 0.876 15 C -0.140 4.140 16 N -0.519 5.519 17 Si 0.731 3.269 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.184 1.184 21 C -0.238 4.238 22 C -0.076 4.076 23 C -0.178 4.178 24 C -0.218 4.218 25 C -0.207 4.207 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.230 0.770 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.089 0.911 38 H 0.150 0.850 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.111 0.889 42 H 0.122 0.878 43 H 0.115 0.885 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.354 -12.216 22.383 25.608 hybrid contribution -0.179 -0.401 -0.238 0.499 sum 2.175 -12.617 22.145 25.580 Atomic orbital electron populations 1.22202 0.94080 1.02135 1.03492 1.19675 0.93995 0.91755 0.82534 1.22338 1.00970 0.95602 1.03538 1.46211 1.54784 1.32274 1.05255 1.20927 0.80180 0.84871 0.84147 1.90683 1.36412 1.25510 1.86393 1.20445 1.01708 0.99393 0.90740 1.18696 0.97754 1.01641 0.97934 1.20393 0.94600 0.98344 0.94690 1.20146 1.01272 1.00180 0.99434 1.19118 0.92039 0.91681 0.86200 1.83567 1.50549 1.41550 1.36713 1.20772 1.05393 1.03739 1.16449 0.87647 1.24464 0.99038 0.94377 0.96163 1.69646 1.38685 1.16676 1.26932 0.86181 0.82484 0.80150 0.78086 1.19899 1.20830 1.18373 1.21220 0.98322 1.04712 0.99570 1.20556 0.98204 0.94179 0.94702 1.22466 1.05111 0.99227 0.90967 1.23197 0.93262 1.02240 1.03120 1.22950 0.97579 1.03525 0.96663 0.92133 0.90025 0.92815 0.92435 0.89924 0.92154 0.77006 0.89006 0.89043 0.87265 0.86610 0.91111 0.85018 0.87596 0.87500 0.88905 0.87816 0.88451 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 8.18 37.16 0.30 -1.40 16 2 C 0.21 1.96 0.92 -131.82 -0.12 1.84 16 3 C -0.17 -1.77 6.97 37.16 0.26 -1.51 16 4 N -0.73 -6.99 5.11 -47.61 -0.24 -7.23 16 5 C 0.51 6.71 7.24 -10.98 -0.08 6.63 16 6 O -0.52 -9.04 12.24 5.56 0.07 -8.98 16 7 C -0.08 -1.00 5.83 -29.03 -0.17 -1.16 16 8 C -0.16 -2.68 4.38 -104.58 -0.46 -3.14 16 9 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 10 C -0.19 -3.96 9.99 -39.39 -0.39 -4.35 16 11 C 0.16 3.88 6.65 -39.10 -0.26 3.62 16 12 O -0.22 -5.95 8.59 0.07 0.00 -5.95 16 13 C -0.39 -11.22 9.95 30.89 0.31 -10.91 16 14 H 0.11 3.11 5.44 -52.49 -0.29 2.83 16 15 C 0.06 1.79 5.49 -17.52 -0.10 1.70 16 16 N -0.88 -25.95 13.96 55.48 0.77 -25.18 16 17 Si 0.91 22.17 28.62 -169.99 -4.86 17.31 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.26 -6.36 7.11 56.52 0.40 -5.96 16 21 C -0.22 -4.92 9.17 -39.39 -0.36 -5.28 16 22 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 23 C -0.16 -1.13 5.34 -90.62 -0.48 -1.61 16 24 C -0.18 -1.17 9.50 -26.73 -0.25 -1.43 16 25 C -0.17 -1.08 9.40 -26.73 -0.25 -1.33 16 26 H 0.06 0.56 7.00 -51.93 -0.36 0.19 16 27 H 0.08 1.12 6.17 -51.93 -0.32 0.80 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.57 7.23 -51.93 -0.38 0.20 16 30 H 0.08 1.16 6.17 -51.93 -0.32 0.84 16 31 H 0.06 0.56 7.18 -51.93 -0.37 0.18 16 32 H 0.40 2.61 8.40 -40.82 -0.34 2.27 16 33 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 34 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 35 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 36 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 37 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.13 3.10 5.64 -52.49 -0.30 2.80 16 39 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.11 0.65 8.04 -51.93 -0.42 0.23 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.72 5.82 -51.93 -0.30 0.42 16 43 H 0.10 0.64 7.08 -51.93 -0.37 0.27 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 355.46 15.07 5.36 5.36 Total: -1.00 -32.59 355.46 -8.01 -40.59 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.27 Total: 5.39 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -2.82 Total: -21.31 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.53 Total: -32.41 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: 0.07 Total: -14.93 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.86 Total: 17.31 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.59 -8.01 -40.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741609937.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.971 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds