Wall clock time and date at job start Tue Mar 31 2020 09:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47068 * 2 1 4 4 N 1.46504 * 109.47416 * 240.00119 * 2 1 3 5 5 C 1.34783 * 119.99508 * 59.99716 * 4 2 1 6 6 O 1.21276 * 120.00311 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99725 * 180.02562 * 5 4 2 8 8 C 1.50699 * 109.47069 * 179.97438 * 7 5 4 9 9 C 1.38302 * 119.93257 * 269.72594 * 8 7 5 10 10 C 1.38095 * 120.07208 * 179.72642 * 9 8 7 11 11 C 1.38887 * 119.92770 * 0.56998 * 10 9 8 12 12 O 1.35741 * 120.07140 * 179.68223 * 11 10 9 13 13 C 1.34833 * 117.00173 * 174.48686 * 12 11 10 14 14 H 1.07997 * 119.99691 * 5.06096 * 13 12 11 15 15 C 1.38651 * 119.99982 * 185.05689 * 13 12 11 16 16 N 1.31557 * 120.00309 * 180.02562 * 15 13 12 17 17 Si 1.86808 * 120.00256 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.46799 * 89.99628 * 17 15 13 19 19 H 1.48491 * 109.47347 * 209.99996 * 17 15 13 20 20 H 1.48500 * 109.46971 * 330.00148 * 17 15 13 21 21 C 1.38883 * 119.85840 * 359.70799 * 11 10 9 22 22 C 1.38099 * 119.93203 * 359.97438 * 21 11 10 23 23 C 1.53000 * 109.47301 * 120.00038 * 2 1 3 24 24 C 1.52999 * 117.51703 * 236.28305 * 23 2 1 25 25 C 1.52994 * 117.49830 * 304.91310 * 23 2 1 26 26 H 1.09003 * 109.46744 * 299.99695 * 1 2 3 27 27 H 1.09004 * 109.47194 * 60.00094 * 1 2 3 28 28 H 1.08999 * 109.46919 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47255 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47368 * 299.99680 * 3 2 1 31 31 H 1.08995 * 109.47376 * 60.00363 * 3 2 1 32 32 H 0.96994 * 120.00179 * 240.00415 * 4 2 1 33 33 H 1.09001 * 109.47200 * 300.00537 * 7 5 4 34 34 H 1.09003 * 109.46765 * 60.00158 * 7 5 4 35 35 H 1.08009 * 119.96119 * 359.97438 * 9 8 7 36 36 H 1.07994 * 120.04079 * 180.27419 * 10 9 8 37 37 H 0.96993 * 120.00476 * 179.97438 * 16 15 13 38 38 H 1.07998 * 120.03063 * 179.97438 * 21 11 10 39 39 H 1.08002 * 119.96149 * 180.02562 * 22 21 11 40 40 H 1.08999 * 115.54692 * 90.58567 * 23 2 1 41 41 H 1.09000 * 117.49706 * 214.97142 * 24 23 2 42 42 H 1.08998 * 117.50277 * 359.97438 * 24 23 2 43 43 H 1.09005 * 117.50099 * 359.97369 * 25 23 2 44 44 H 1.08994 * 117.50158 * 145.00072 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 1.6927 -0.2300 -2.4203 6 8 0.9958 0.7562 -2.5316 7 6 2.1946 -0.9407 -3.6508 8 6 1.6918 -0.2306 -4.8812 9 6 0.4857 -0.6012 -5.4475 10 6 0.0195 0.0513 -6.5717 11 6 0.7689 1.0729 -7.1406 12 8 0.3165 1.7120 -8.2495 13 6 1.0344 2.7676 -8.6834 14 1 1.9684 3.0194 -8.2032 15 6 0.5736 3.5295 -9.7462 16 7 1.2743 4.5592 -10.1700 17 14 -1.0422 3.0942 -10.5764 18 1 -2.1540 3.8119 -9.9026 19 1 -0.9883 3.4949 -12.0053 20 1 -1.2688 1.6297 -10.4812 21 6 1.9824 1.4389 -6.5730 22 6 2.4400 0.7868 -5.4449 23 6 2.0400 -0.7212 1.2492 24 6 2.9858 0.0485 2.1733 25 6 1.5432 -0.2200 2.6067 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.5760 -1.4792 -1.1072 33 1 3.2846 -0.9412 -3.6509 34 1 1.8309 -1.9683 -3.6506 35 1 -0.0941 -1.3992 -5.0076 36 1 -0.9245 -0.2355 -7.0108 37 1 0.9522 5.0920 -10.9137 38 1 2.5677 2.2326 -7.0134 39 1 3.3834 1.0713 -5.0028 40 1 2.2062 -1.7928 1.1384 41 1 3.7741 -0.5166 2.6704 42 1 3.2452 1.0689 1.8911 43 1 0.8533 0.6240 2.6098 44 1 1.3826 -0.9616 3.3890 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741609937.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:02 Heat of formation + Delta-G solvation = -35.060729 kcal Electronic energy + Delta-G solvation = -24171.454804 eV Core-core repulsion = 20668.552356 eV Total energy + Delta-G solvation = -3502.902448 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.39850 -40.75533 -39.19080 -38.15610 -35.27284 -34.52386 -33.27074 -31.82524 -31.59227 -28.38979 -28.33354 -26.78856 -24.96325 -23.70136 -23.02871 -22.45127 -20.95123 -20.15404 -19.80405 -19.10279 -18.23919 -17.33718 -16.75961 -16.43697 -16.03993 -15.77494 -15.64166 -15.54645 -15.31445 -15.09909 -14.64246 -14.45388 -14.32419 -14.14988 -14.05773 -13.62916 -13.20517 -13.09751 -13.02750 -12.69110 -12.49239 -12.45115 -12.39600 -12.29093 -11.93872 -11.91199 -11.78943 -11.30100 -11.27838 -11.03741 -10.91922 -10.47627 -9.94405 -9.77963 -8.96691 -8.50891 -6.23379 0.59355 0.63303 1.29437 1.34421 1.50760 1.82181 2.25425 2.27401 2.78224 2.94495 3.06958 3.19292 3.63082 3.88258 3.98415 4.05124 4.08591 4.12116 4.14700 4.18331 4.33780 4.46524 4.50334 4.58545 4.71712 4.72308 4.75672 4.83318 4.87203 4.94293 4.98009 5.00039 5.05525 5.19405 5.26412 5.31091 5.36205 5.38488 5.40500 5.57514 5.73186 5.75139 5.80444 5.91570 6.25841 6.77117 6.83400 7.48232 7.58516 8.61055 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.030613 B = 0.002637 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.437360 B =10617.337661 C =10748.191129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.205 3.795 3 C -0.163 4.163 4 N -0.712 5.712 5 C 0.511 3.489 6 O -0.568 6.568 7 C -0.081 4.081 8 C -0.134 4.134 9 C -0.059 4.059 10 C -0.194 4.194 11 C 0.117 3.883 12 O -0.246 6.246 13 C -0.400 4.400 14 H 0.078 0.922 15 C 0.008 3.992 16 N -0.925 5.925 17 Si 0.972 3.028 18 H -0.268 1.268 19 H -0.264 1.264 20 H -0.262 1.262 21 C -0.238 4.238 22 C -0.065 4.065 23 C -0.159 4.159 24 C -0.180 4.180 25 C -0.169 4.169 26 H 0.069 0.931 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.415 0.585 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.153 0.847 36 H 0.127 0.873 37 H 0.285 0.715 38 H 0.105 0.895 39 H 0.131 0.869 40 H 0.126 0.874 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.015 -16.686 25.777 30.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.119 3.881 3 C -0.221 4.221 4 N -0.366 5.366 5 C 0.299 3.701 6 O -0.447 6.447 7 C -0.121 4.121 8 C -0.135 4.135 9 C -0.077 4.077 10 C -0.213 4.213 11 C 0.068 3.932 12 O -0.154 6.154 13 C -0.476 4.476 14 H 0.096 0.904 15 C -0.190 4.190 16 N -0.566 5.566 17 Si 0.794 3.206 18 H -0.193 1.193 19 H -0.189 1.189 20 H -0.186 1.186 21 C -0.258 4.258 22 C -0.083 4.083 23 C -0.177 4.177 24 C -0.217 4.217 25 C -0.206 4.206 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.253 0.747 33 H 0.141 0.859 34 H 0.150 0.850 35 H 0.170 0.830 36 H 0.145 0.855 37 H 0.094 0.906 38 H 0.123 0.877 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.125 0.875 42 H 0.114 0.886 43 H 0.110 0.890 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.357 -15.858 25.421 30.054 hybrid contribution -0.049 0.544 -0.800 0.969 sum 2.308 -15.313 24.622 29.087 Atomic orbital electron populations 1.22146 0.94945 1.02264 1.02233 1.19684 0.93371 0.91385 0.83630 1.22287 1.01233 0.96425 1.02151 1.46020 1.53948 1.32392 1.04262 1.21053 0.79552 0.84183 0.85341 1.90708 1.38950 1.27833 1.87166 1.20569 1.03683 1.00413 0.87391 1.19298 0.96377 0.99418 0.98391 1.20932 0.94996 0.98557 0.93207 1.20503 1.01451 0.99170 1.00134 1.19675 0.93508 0.93270 0.86718 1.83505 1.51041 1.41949 1.38937 1.20708 1.05043 1.04945 1.16901 0.90400 1.25306 1.02636 0.94276 0.96767 1.69729 1.40638 1.18047 1.28147 0.85198 0.78034 0.79534 0.77800 1.19287 1.18872 1.18632 1.21241 0.98242 1.05043 1.01237 1.20890 0.99577 0.94350 0.93480 1.22388 1.05671 0.99874 0.89764 1.23238 0.93730 1.01939 1.02788 1.23030 0.97413 1.03643 0.96520 0.91183 0.93548 0.91878 0.91832 0.93669 0.91200 0.74750 0.85874 0.84972 0.82988 0.85483 0.90557 0.87724 0.85123 0.85610 0.87491 0.88633 0.89044 0.87224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 8.18 71.98 0.59 -2.48 16 2 C 0.21 3.38 0.92 3.60 0.00 3.38 16 3 C -0.16 -3.30 6.97 71.98 0.50 -2.80 16 4 N -0.71 -10.99 5.11 -422.92 -2.16 -13.15 16 5 C 0.51 11.79 7.24 87.66 0.63 12.43 16 6 O -0.57 -19.35 12.24 -3.02 -0.04 -19.39 16 7 C -0.08 -1.55 5.83 29.10 0.17 -1.38 16 8 C -0.13 -4.13 4.38 -19.84 -0.09 -4.21 16 9 C -0.06 -1.92 9.69 22.25 0.22 -1.70 16 10 C -0.19 -7.91 9.99 22.39 0.22 -7.69 16 11 C 0.12 5.85 6.65 22.58 0.15 6.00 16 12 O -0.25 -14.14 8.59 -22.67 -0.19 -14.33 16 13 C -0.40 -24.70 9.95 67.92 0.68 -24.03 16 14 H 0.08 5.06 5.44 -2.91 -0.02 5.04 16 15 C 0.01 0.49 5.49 84.83 0.47 0.96 16 16 N -0.92 -57.09 13.96 21.61 0.30 -56.79 16 17 Si 0.97 47.20 28.62 68.60 1.96 49.16 16 18 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 20 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 21 C -0.24 -11.25 9.17 22.39 0.21 -11.05 16 22 C -0.06 -2.40 9.69 22.25 0.22 -2.19 16 23 C -0.16 -1.65 5.34 -10.80 -0.06 -1.71 16 24 C -0.18 -1.74 9.50 30.59 0.29 -1.45 16 25 C -0.17 -1.61 9.40 30.59 0.29 -1.32 16 26 H 0.07 1.19 7.00 -2.39 -0.02 1.17 16 27 H 0.05 1.26 6.17 -2.39 -0.01 1.24 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.17 7.23 -2.39 -0.02 1.15 16 30 H 0.04 1.28 6.17 -2.39 -0.01 1.26 16 31 H 0.07 1.23 7.18 -2.39 -0.02 1.21 16 32 H 0.42 3.35 8.40 -92.71 -0.78 2.57 16 33 H 0.12 1.70 8.09 -2.39 -0.02 1.68 16 34 H 0.13 1.58 8.08 -2.39 -0.02 1.56 16 35 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 36 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 37 H 0.28 16.07 8.31 -92.71 -0.77 15.30 16 38 H 0.10 5.42 5.64 -2.91 -0.02 5.40 16 39 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 40 H 0.13 0.89 8.04 -2.39 -0.02 0.87 16 41 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.10 1.09 5.82 -2.39 -0.01 1.08 16 43 H 0.09 0.99 7.08 -2.38 -0.02 0.97 16 44 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -77.75 355.46 4.60 -73.15 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.24 Total: 20.59 kcal Atomic # 6 Polarization: -43.72 SS G_CDS: 4.48 Total: -39.24 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -1.86 Total: -69.94 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.23 Total: -33.72 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.96 Total: 49.16 kcal Total: -77.75 4.60 -73.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741609937.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.088 kcal (2) G-P(sol) polarization free energy of solvation -77.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds