Wall clock time and date at job start Tue Mar 31 2020 10:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.31008 * 120.00073 * 2 1 4 4 C 1.50701 * 119.99947 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46911 * 125.00032 * 4 3 2 6 6 H 1.08998 * 109.46613 * 55.00403 * 5 4 3 7 7 C 1.52998 * 109.46798 * 174.99920 * 5 4 3 8 8 O 1.42902 * 109.47408 * 55.00412 * 7 5 4 9 9 N 1.46499 * 109.46937 * 294.99791 * 5 4 3 10 10 C 1.34784 * 119.99630 * 154.99943 * 9 5 4 11 11 O 1.21281 * 119.99942 * 0.02562 * 10 9 5 12 12 C 1.50701 * 119.99890 * 180.02562 * 10 9 5 13 13 C 1.50699 * 109.46671 * 179.97438 * 12 10 9 14 14 C 1.37632 * 120.13067 * 264.99771 * 13 12 10 15 15 C 1.38616 * 120.25141 * 180.30341 * 14 13 12 16 16 C 1.38657 * 120.49769 * 359.44449 * 15 14 13 17 17 C 1.37599 * 120.24996 * 0.55619 * 16 15 14 18 18 C 1.40698 * 120.12520 * 85.02739 * 13 12 10 19 19 C 1.41401 * 120.24431 * 359.94844 * 18 13 12 20 20 H 1.07996 * 120.00140 * 329.79416 * 19 18 13 21 21 C 1.39943 * 119.99611 * 149.80024 * 19 18 13 22 22 N 1.30828 * 120.00177 * 162.08912 * 21 19 18 23 23 Si 1.86803 * 120.00186 * 342.08044 * 21 19 18 24 24 H 1.48499 * 109.47049 * 95.39710 * 23 21 19 25 25 H 1.48502 * 109.46957 * 215.39592 * 23 21 19 26 26 H 1.48500 * 109.46884 * 335.39299 * 23 21 19 27 27 H 1.09003 * 109.47316 * 300.00214 * 1 2 3 28 28 H 1.09000 * 109.46877 * 60.00038 * 1 2 3 29 29 H 1.08996 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.00368 * 180.02562 * 2 1 3 31 31 H 1.07996 * 119.99785 * 0.02562 * 3 2 1 32 32 H 1.09009 * 109.47356 * 5.00354 * 4 3 2 33 33 H 1.08997 * 109.46988 * 245.00162 * 4 3 2 34 34 H 1.09002 * 109.46897 * 174.99680 * 7 5 4 35 35 H 1.08997 * 109.47244 * 294.99918 * 7 5 4 36 36 H 0.96699 * 114.00307 * 179.97438 * 8 7 5 37 37 H 0.96991 * 120.00549 * 335.00559 * 9 5 4 38 38 H 1.08999 * 109.47141 * 60.00010 * 12 10 9 39 39 H 1.08995 * 109.46651 * 299.99957 * 12 10 9 40 40 H 1.08001 * 119.87446 * 0.02562 * 14 13 12 41 41 H 1.07997 * 119.74655 * 179.70453 * 15 14 13 42 42 H 1.07996 * 119.87456 * 180.30205 * 16 15 14 43 43 H 1.07999 * 120.12771 * 179.75037 * 17 16 15 44 44 H 0.96989 * 120.00516 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1620 1.1346 0.0000 4 6 3.6690 1.1345 0.0006 5 6 4.1794 1.9617 -1.1811 6 1 3.7448 2.9604 -1.1400 7 6 5.7042 2.0657 -1.1098 8 8 6.2687 0.7544 -1.0462 9 7 3.7924 1.3116 -2.4356 10 6 3.6659 2.0414 -3.5616 11 8 3.8731 3.2361 -3.5364 12 6 3.2672 1.3729 -4.8520 13 6 3.1968 2.4024 -5.9502 14 6 1.9948 2.9928 -6.2678 15 6 1.9260 3.9355 -7.2817 16 6 3.0666 4.3031 -7.9793 17 6 4.2790 3.7260 -7.6789 18 6 4.3596 2.7634 -6.6553 19 6 5.6002 2.1639 -6.3375 20 1 5.7985 1.8358 -5.3278 21 6 6.5711 1.9960 -7.3312 22 7 7.8173 1.7778 -6.9981 23 14 6.0877 2.0831 -9.1335 24 1 6.3245 3.4575 -9.6437 25 1 6.9051 1.1184 -9.9124 26 1 4.6495 1.7425 -9.2773 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 2.0470 -0.9353 -0.0004 31 1 1.6220 2.0698 0.0004 32 1 4.0324 0.1107 -0.0887 33 1 4.0320 1.5690 0.9320 34 1 6.0753 2.5782 -1.9974 35 1 5.9889 2.6275 -0.2202 36 1 7.2345 0.7438 -0.9993 37 1 3.6270 0.3561 -2.4558 38 1 2.2908 0.9034 -4.7315 39 1 4.0056 0.6142 -5.1114 40 1 1.1009 2.7172 -5.7280 41 1 0.9777 4.3901 -7.5274 42 1 3.0024 5.0422 -8.7641 43 1 5.1654 4.0108 -8.2262 44 1 8.4902 1.6611 -7.6868 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771611537.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:45 Heat of formation + Delta-G solvation = -68.144163 kcal Electronic energy + Delta-G solvation = -24850.939626 eV Core-core repulsion = 21346.602572 eV Total energy + Delta-G solvation = -3504.337054 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -39.48759 -37.90796 -36.88998 -35.74410 -33.82358 -33.52819 -31.91978 -30.69701 -30.24289 -28.13471 -26.67153 -24.78953 -24.42462 -21.58458 -21.15825 -20.19137 -19.63986 -19.21029 -17.32809 -17.28821 -16.34467 -16.00164 -15.56713 -15.04874 -14.49657 -14.45913 -14.13784 -14.00445 -13.68433 -13.54089 -13.43386 -13.08369 -12.84733 -12.65931 -12.52892 -12.04576 -12.01463 -11.81094 -11.62523 -11.34343 -11.11693 -11.02297 -10.84678 -10.75453 -10.67157 -10.19856 -9.88280 -9.65372 -9.50078 -9.14301 -9.07267 -8.96883 -8.56812 -7.53465 -7.43528 -6.88172 -4.41458 2.16267 2.62739 2.77610 3.16266 3.24444 3.36451 3.41709 3.73004 4.03715 4.43860 4.57888 4.65438 4.99433 5.05885 5.28601 5.34629 5.39822 5.45963 5.48686 5.53795 5.66533 5.76496 5.81460 5.84031 5.93984 6.00465 6.05358 6.15741 6.21019 6.25896 6.37050 6.62747 6.66203 6.76005 6.78418 6.96068 7.01502 7.26892 7.49673 7.72597 7.73174 7.80860 7.97047 8.08679 8.21267 8.42799 8.75210 8.88772 8.95729 10.14207 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.004476 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.681400 B = 6253.646909 C = 7468.952909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.167 4.167 3 C -0.153 4.153 4 C -0.092 4.092 5 C 0.156 3.844 6 H 0.096 0.904 7 C 0.061 3.939 8 O -0.569 6.569 9 N -0.727 5.727 10 C 0.518 3.482 11 O -0.528 6.528 12 C -0.075 4.075 13 C -0.163 4.163 14 C -0.070 4.070 15 C -0.242 4.242 16 C -0.081 4.081 17 C -0.234 4.234 18 C 0.109 3.891 19 C -0.443 4.443 20 H 0.089 0.911 21 C 0.085 3.915 22 N -0.811 5.811 23 Si 0.909 3.091 24 H -0.272 1.272 25 H -0.293 1.293 26 H -0.244 1.244 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.377 0.623 37 H 0.397 0.603 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.935 -4.617 11.751 14.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.185 4.185 3 C -0.171 4.171 4 C -0.130 4.130 5 C 0.051 3.949 6 H 0.114 0.886 7 C -0.018 4.018 8 O -0.374 6.374 9 N -0.380 5.380 10 C 0.306 3.694 11 O -0.402 6.402 12 C -0.114 4.114 13 C -0.165 4.165 14 C -0.088 4.088 15 C -0.261 4.261 16 C -0.099 4.099 17 C -0.253 4.253 18 C 0.106 3.894 19 C -0.472 4.472 20 H 0.107 0.893 21 C -0.133 4.133 22 N -0.436 5.436 23 Si 0.736 3.264 24 H -0.198 1.198 25 H -0.220 1.220 26 H -0.167 1.167 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.224 0.776 37 H 0.231 0.769 38 H 0.095 0.905 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.116 0.884 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.134 -3.965 11.721 14.282 hybrid contribution 0.640 -0.085 -0.759 0.996 sum -6.494 -4.050 10.962 13.369 Atomic orbital electron populations 1.20827 0.93391 1.02066 1.01829 1.22818 0.96008 0.97924 1.01736 1.22807 0.95620 0.98220 1.00468 1.20883 0.92564 1.01941 0.97606 1.20858 0.92056 0.97901 0.84123 0.88649 1.22682 0.94356 0.84409 1.00328 1.86409 1.25241 1.28294 1.97489 1.46002 1.72158 1.11703 1.08174 1.21063 0.75956 0.87554 0.84842 1.90671 1.48873 1.15289 1.85396 1.20289 1.01848 0.98617 0.90689 1.19085 0.93198 1.02540 1.01660 1.20427 0.95853 0.96147 0.96421 1.20322 0.96931 1.05732 1.03136 1.20587 0.93292 0.98092 0.97964 1.20993 0.96575 1.02924 1.04806 1.17487 0.92199 0.89728 0.89939 1.19411 0.95593 1.34213 0.97972 0.89302 1.26140 0.93778 0.91331 1.02059 1.69703 1.01575 1.35435 1.36884 0.86357 0.80824 0.77956 0.81295 1.19809 1.22027 1.16711 0.92064 0.91717 0.92284 0.87524 0.87576 0.90164 0.90114 0.92349 0.93503 0.77626 0.76923 0.90486 0.88250 0.89160 0.89076 0.89078 0.88385 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 10.17 36.00 0.37 -0.70 16 2 C -0.17 -1.63 9.87 -36.03 -0.36 -1.98 16 3 C -0.15 -1.62 8.88 -36.03 -0.32 -1.94 16 4 C -0.09 -1.00 4.92 -27.88 -0.14 -1.14 16 5 C 0.16 2.15 2.36 -67.93 -0.16 1.99 16 6 H 0.10 1.43 7.58 -51.93 -0.39 1.04 16 7 C 0.06 0.85 6.85 37.16 0.25 1.11 16 8 O -0.57 -7.51 12.83 -35.23 -0.45 -7.96 16 9 N -0.73 -11.23 4.74 -53.80 -0.25 -11.49 16 10 C 0.52 10.26 7.41 -10.98 -0.08 10.18 16 11 O -0.53 -12.65 15.70 5.56 0.09 -12.56 16 12 C -0.07 -1.47 5.19 -29.03 -0.15 -1.62 16 13 C -0.16 -3.83 4.43 -103.92 -0.46 -4.29 16 14 C -0.07 -1.55 9.66 -39.66 -0.38 -1.93 16 15 C -0.24 -5.31 10.05 -39.29 -0.39 -5.71 16 16 C -0.08 -1.86 10.02 -39.66 -0.40 -2.26 16 17 C -0.23 -5.94 7.17 -38.87 -0.28 -6.22 16 18 C 0.11 2.85 5.10 -106.82 -0.54 2.31 16 19 C -0.44 -12.09 8.56 -37.74 -0.32 -12.41 16 20 H 0.09 2.56 7.00 -52.49 -0.37 2.19 16 21 C 0.09 2.26 5.41 -17.34 -0.09 2.17 16 22 N -0.81 -21.84 13.93 55.55 0.77 -21.07 16 23 Si 0.91 21.19 24.52 -169.99 -4.17 17.02 16 24 H -0.27 -6.24 6.71 56.52 0.38 -5.86 16 25 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.24 -5.80 6.86 56.52 0.39 -5.41 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.11 0.98 7.84 -52.49 -0.41 0.57 16 31 H 0.11 1.15 8.05 -52.49 -0.42 0.72 16 32 H 0.08 0.89 7.38 -51.92 -0.38 0.51 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.38 3.66 9.12 45.56 0.42 4.08 16 37 H 0.40 5.37 8.60 -40.82 -0.35 5.02 16 38 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 39 H 0.10 1.98 7.14 -51.93 -0.37 1.61 16 40 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 42 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 43 H 0.10 2.48 4.77 -52.49 -0.25 2.23 16 44 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 LS Contribution 365.26 15.07 5.50 5.50 Total: -1.00 -31.80 365.26 -7.90 -39.70 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -5.93 Total: 13.30 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -3.46 Total: -22.44 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.52 Total: -32.56 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.36 Total: -20.52 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.17 Total: 17.02 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.80 -7.90 -39.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771611537.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.447 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds