Wall clock time and date at job start Tue Mar 31 2020 10:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.31008 * 119.99659 * 2 1 4 4 C 1.50701 * 119.99947 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.46911 * 125.00032 * 4 3 2 6 6 H 1.08998 * 109.46613 * 55.00403 * 5 4 3 7 7 C 1.52998 * 109.46798 * 174.99920 * 5 4 3 8 8 O 1.42902 * 109.47408 * 55.00412 * 7 5 4 9 9 N 1.46499 * 109.46937 * 294.99791 * 5 4 3 10 10 C 1.34784 * 119.99630 * 154.99943 * 9 5 4 11 11 O 1.21281 * 119.99942 * 0.02562 * 10 9 5 12 12 C 1.50701 * 119.99890 * 180.02562 * 10 9 5 13 13 C 1.50699 * 109.46671 * 179.97438 * 12 10 9 14 14 C 1.37632 * 120.13067 * 264.99771 * 13 12 10 15 15 C 1.38616 * 120.25141 * 180.30341 * 14 13 12 16 16 C 1.38657 * 120.49769 * 359.44449 * 15 14 13 17 17 C 1.37599 * 120.24996 * 0.55619 * 16 15 14 18 18 C 1.40698 * 120.12520 * 85.02739 * 13 12 10 19 19 C 1.41401 * 120.24431 * 359.94844 * 18 13 12 20 20 H 1.07996 * 120.00140 * 329.79416 * 19 18 13 21 21 C 1.39943 * 119.99611 * 149.80024 * 19 18 13 22 22 N 1.30828 * 120.00177 * 162.08912 * 21 19 18 23 23 Si 1.86803 * 120.00186 * 342.08044 * 21 19 18 24 24 H 1.48499 * 109.47049 * 95.39710 * 23 21 19 25 25 H 1.48502 * 109.46957 * 215.39592 * 23 21 19 26 26 H 1.48500 * 109.46884 * 335.39299 * 23 21 19 27 27 H 1.09004 * 109.47232 * 60.00274 * 1 2 3 28 28 H 1.09005 * 109.46985 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47220 * 299.99792 * 1 2 3 30 30 H 1.07991 * 120.00426 * 180.02562 * 2 1 3 31 31 H 1.07996 * 119.99785 * 180.02562 * 3 2 1 32 32 H 1.09009 * 109.47356 * 5.00354 * 4 3 2 33 33 H 1.08997 * 109.46988 * 245.00162 * 4 3 2 34 34 H 1.09002 * 109.46897 * 174.99680 * 7 5 4 35 35 H 1.08997 * 109.47244 * 294.99918 * 7 5 4 36 36 H 0.96699 * 114.00307 * 179.97438 * 8 7 5 37 37 H 0.96991 * 120.00549 * 335.00559 * 9 5 4 38 38 H 1.08999 * 109.47141 * 60.00010 * 12 10 9 39 39 H 1.08995 * 109.46651 * 299.99957 * 12 10 9 40 40 H 1.08001 * 119.87446 * 0.02562 * 14 13 12 41 41 H 1.07997 * 119.74655 * 179.70453 * 15 14 13 42 42 H 1.07996 * 119.87456 * 180.30205 * 16 15 14 43 43 H 1.07999 * 120.12771 * 179.75037 * 17 16 15 44 44 H 0.96989 * 120.00516 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1346 0.0000 4 6 1.4084 2.4397 -0.0006 5 6 1.8694 3.2953 1.1811 6 1 2.9517 3.4183 1.1400 7 6 1.1971 4.6678 1.1098 8 8 -0.2207 4.5010 1.0462 9 7 1.5000 2.6350 2.4356 10 6 2.1953 2.8905 3.5616 11 8 3.1263 3.6673 3.5364 12 6 1.8157 2.2108 4.8520 13 6 2.7425 2.6647 5.9502 14 6 3.8548 1.9190 6.2678 15 6 4.7056 2.3308 7.2817 16 6 4.4536 3.5024 7.9793 17 6 3.3475 4.2638 7.6789 18 6 2.4737 3.8523 6.6553 19 6 1.3342 4.6268 6.3375 20 1 0.9509 4.6345 5.3278 21 6 0.7032 5.3837 7.3312 22 7 -0.1088 6.3538 6.9981 23 14 1.0204 5.0086 9.1335 24 1 2.0922 5.9009 9.6437 25 1 -0.2238 5.2340 9.9124 26 1 1.4446 3.5928 9.2773 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 2.0470 -0.9352 -0.0004 31 1 3.2419 1.1346 -0.0004 32 1 0.3400 2.2424 0.0887 33 1 1.6031 2.9712 -0.9320 34 1 1.4553 5.2454 1.9974 35 1 1.5412 5.1953 0.2202 36 1 -0.7129 5.3320 0.9993 37 1 0.7553 2.0140 2.4558 38 1 1.8974 1.1306 4.7315 39 1 0.7895 2.4709 5.1114 40 1 4.0632 1.0070 5.7280 41 1 5.5734 1.7369 7.5274 42 1 5.1258 3.8163 8.7641 43 1 3.1510 5.1738 8.2262 44 1 -0.5464 6.8781 7.6868 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771611538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:49 Heat of formation + Delta-G solvation = -65.616836 kcal Electronic energy + Delta-G solvation = -25020.312576 eV Core-core repulsion = 21516.085115 eV Total energy + Delta-G solvation = -3504.227461 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.51397 -37.94821 -36.94200 -35.92106 -33.73926 -33.52849 -31.89432 -30.41378 -30.20285 -27.75102 -26.68014 -25.32842 -24.77106 -21.70152 -21.22148 -20.17879 -19.38757 -18.54718 -17.29149 -17.27241 -16.40931 -16.15155 -15.64308 -15.03219 -14.96097 -14.39033 -14.19919 -14.05720 -13.67720 -13.48674 -13.33579 -13.05801 -12.76662 -12.63246 -12.41877 -12.03937 -11.98351 -11.80709 -11.78624 -11.34538 -11.06401 -10.94394 -10.75503 -10.70700 -10.66416 -10.19873 -9.88132 -9.65392 -9.50105 -9.15417 -9.07363 -8.97642 -8.56962 -7.53451 -7.43554 -6.88228 -4.41480 2.16897 2.62712 2.77614 3.16267 3.24414 3.36441 3.41666 3.72750 4.03690 4.43886 4.57859 4.70914 5.01031 5.07385 5.20229 5.35071 5.40432 5.49345 5.50979 5.56650 5.66978 5.77435 5.82291 5.88193 5.94970 6.00061 6.09182 6.15719 6.23622 6.26555 6.36906 6.61072 6.66148 6.76338 6.78433 6.96051 7.01490 7.26885 7.49654 7.72576 7.73106 7.80863 7.97017 8.08441 8.21243 8.42747 8.75184 8.88748 8.95621 10.14153 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015801 B = 0.004478 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.604632 B = 6251.345825 C = 7228.383178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.167 4.167 3 C -0.154 4.154 4 C -0.100 4.100 5 C 0.157 3.843 6 H 0.095 0.905 7 C 0.061 3.939 8 O -0.569 6.569 9 N -0.727 5.727 10 C 0.518 3.482 11 O -0.527 6.527 12 C -0.075 4.075 13 C -0.163 4.163 14 C -0.070 4.070 15 C -0.242 4.242 16 C -0.081 4.081 17 C -0.234 4.234 18 C 0.109 3.891 19 C -0.443 4.443 20 H 0.089 0.911 21 C 0.085 3.915 22 N -0.812 5.812 23 Si 0.909 3.091 24 H -0.272 1.272 25 H -0.293 1.293 26 H -0.244 1.244 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.377 0.623 37 H 0.396 0.604 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.430 -7.827 -11.749 14.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.185 4.185 3 C -0.172 4.172 4 C -0.138 4.138 5 C 0.051 3.949 6 H 0.113 0.887 7 C -0.018 4.018 8 O -0.374 6.374 9 N -0.380 5.380 10 C 0.306 3.694 11 O -0.402 6.402 12 C -0.115 4.115 13 C -0.165 4.165 14 C -0.088 4.088 15 C -0.261 4.261 16 C -0.099 4.099 17 C -0.253 4.253 18 C 0.106 3.894 19 C -0.472 4.472 20 H 0.107 0.893 21 C -0.133 4.133 22 N -0.436 5.436 23 Si 0.736 3.264 24 H -0.198 1.198 25 H -0.220 1.220 26 H -0.167 1.167 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.224 0.776 37 H 0.230 0.770 38 H 0.095 0.905 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.116 0.884 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.771 -7.669 -11.719 14.027 hybrid contribution -0.277 0.456 0.756 0.926 sum -1.049 -7.213 -10.963 13.165 Atomic orbital electron populations 1.20867 0.93360 1.01887 1.02049 1.22763 0.96218 0.97712 1.01832 1.22811 0.99540 0.94285 1.00539 1.20987 1.01201 0.93982 0.97582 1.20850 0.99483 0.90440 0.84089 0.88698 1.22681 0.81265 0.97504 1.00317 1.86406 1.18016 1.35509 1.97489 1.46004 1.35876 1.47948 1.08188 1.21065 0.81783 0.81738 0.84843 1.90671 1.29149 1.34989 1.85392 1.20290 1.01714 0.98754 0.90697 1.19084 0.98532 0.97210 1.01660 1.20428 0.94116 0.97883 0.96417 1.20323 1.02454 1.00206 1.03133 1.20588 0.96502 0.94886 0.97967 1.20992 0.97995 1.01498 1.04802 1.17488 0.92159 0.89774 0.89941 1.19408 1.09274 1.20520 0.97964 0.89306 1.26141 0.93234 0.91874 1.02060 1.69703 1.23363 1.13662 1.36883 0.86356 0.76811 0.81964 0.81294 1.19811 1.22028 1.16715 0.91818 0.92467 0.91419 0.87642 0.87545 0.89472 0.90144 0.92354 0.93519 0.77634 0.77002 0.90486 0.88253 0.89157 0.89076 0.89077 0.88385 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 8.65 36.01 0.31 -0.78 16 2 C -0.17 -1.63 10.26 -36.03 -0.37 -2.00 16 3 C -0.15 -1.63 9.25 -36.03 -0.33 -1.96 16 4 C -0.10 -1.08 4.72 -27.88 -0.13 -1.22 16 5 C 0.16 2.16 2.36 -67.93 -0.16 2.00 16 6 H 0.10 1.43 7.58 -51.93 -0.39 1.04 16 7 C 0.06 0.85 6.85 37.16 0.25 1.11 16 8 O -0.57 -7.43 12.83 -35.23 -0.45 -7.88 16 9 N -0.73 -11.21 4.74 -53.80 -0.25 -11.47 16 10 C 0.52 10.25 7.41 -10.98 -0.08 10.17 16 11 O -0.53 -12.64 15.70 5.56 0.09 -12.56 16 12 C -0.07 -1.47 5.19 -29.03 -0.15 -1.62 16 13 C -0.16 -3.83 4.43 -103.92 -0.46 -4.29 16 14 C -0.07 -1.55 9.66 -39.66 -0.38 -1.93 16 15 C -0.24 -5.32 10.05 -39.29 -0.39 -5.71 16 16 C -0.08 -1.87 10.02 -39.66 -0.40 -2.26 16 17 C -0.23 -5.93 7.17 -38.87 -0.28 -6.21 16 18 C 0.11 2.85 5.10 -106.82 -0.54 2.31 16 19 C -0.44 -12.07 8.56 -37.74 -0.32 -12.39 16 20 H 0.09 2.55 7.00 -52.49 -0.37 2.18 16 21 C 0.09 2.26 5.41 -17.34 -0.09 2.16 16 22 N -0.81 -21.83 13.93 55.55 0.77 -21.06 16 23 Si 0.91 21.17 24.52 -169.99 -4.17 17.00 16 24 H -0.27 -6.24 6.71 56.52 0.38 -5.86 16 25 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.24 -5.80 6.86 56.52 0.39 -5.41 16 27 H 0.06 0.53 7.85 -51.93 -0.41 0.12 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.62 7.66 -51.93 -0.40 0.22 16 30 H 0.11 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.11 1.14 8.06 -52.49 -0.42 0.71 16 32 H 0.09 0.96 5.38 -51.92 -0.28 0.68 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.38 3.62 9.12 45.56 0.42 4.04 16 37 H 0.40 5.34 8.60 -40.82 -0.35 4.99 16 38 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 39 H 0.10 1.97 7.14 -51.93 -0.37 1.60 16 40 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 42 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 43 H 0.10 2.48 4.77 -52.49 -0.25 2.23 16 44 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 LS Contribution 361.76 15.07 5.45 5.45 Total: -1.00 -31.77 361.76 -7.90 -39.66 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -5.80 Total: 13.47 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -3.54 Total: -22.62 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.52 Total: -32.52 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.36 Total: -20.44 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.17 Total: 17.00 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.77 -7.90 -39.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771611538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.956 kcal (2) G-P(sol) polarization free energy of solvation -31.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds