Wall clock time and date at job start Tue Mar 31 2020 10:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.31008 * 119.99659 * 2 1 4 4 C 1.50701 * 119.99947 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.46911 * 125.00032 * 4 3 2 6 6 H 1.08998 * 109.46613 * 55.00403 * 5 4 3 7 7 C 1.52998 * 109.46798 * 174.99920 * 5 4 3 8 8 O 1.42902 * 109.47408 * 55.00412 * 7 5 4 9 9 N 1.46499 * 109.46937 * 294.99791 * 5 4 3 10 10 C 1.34784 * 119.99630 * 154.99943 * 9 5 4 11 11 O 1.21281 * 119.99942 * 0.02562 * 10 9 5 12 12 C 1.50701 * 119.99890 * 180.02562 * 10 9 5 13 13 C 1.50699 * 109.46671 * 179.97438 * 12 10 9 14 14 C 1.37632 * 120.13067 * 264.99771 * 13 12 10 15 15 C 1.38616 * 120.25141 * 180.30341 * 14 13 12 16 16 C 1.38657 * 120.49769 * 359.44449 * 15 14 13 17 17 C 1.37599 * 120.24996 * 0.55619 * 16 15 14 18 18 C 1.40698 * 120.12520 * 85.02739 * 13 12 10 19 19 C 1.41401 * 120.24431 * 359.94844 * 18 13 12 20 20 H 1.07996 * 120.00140 * 329.79416 * 19 18 13 21 21 C 1.39943 * 119.99611 * 149.80024 * 19 18 13 22 22 N 1.30828 * 120.00177 * 162.08912 * 21 19 18 23 23 Si 1.86803 * 120.00186 * 342.08044 * 21 19 18 24 24 H 1.48499 * 109.47049 * 95.39710 * 23 21 19 25 25 H 1.48502 * 109.46957 * 215.39592 * 23 21 19 26 26 H 1.48500 * 109.46884 * 335.39299 * 23 21 19 27 27 H 1.09004 * 109.47232 * 60.00274 * 1 2 3 28 28 H 1.09005 * 109.46985 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47220 * 299.99792 * 1 2 3 30 30 H 1.07991 * 120.00426 * 180.02562 * 2 1 3 31 31 H 1.07996 * 119.99785 * 180.02562 * 3 2 1 32 32 H 1.09009 * 109.47356 * 5.00354 * 4 3 2 33 33 H 1.08997 * 109.46988 * 245.00162 * 4 3 2 34 34 H 1.09002 * 109.46897 * 174.99680 * 7 5 4 35 35 H 1.08997 * 109.47244 * 294.99918 * 7 5 4 36 36 H 0.96699 * 114.00307 * 179.97438 * 8 7 5 37 37 H 0.96991 * 120.00549 * 335.00559 * 9 5 4 38 38 H 1.08999 * 109.47141 * 60.00010 * 12 10 9 39 39 H 1.08995 * 109.46651 * 299.99957 * 12 10 9 40 40 H 1.08001 * 119.87446 * 0.02562 * 14 13 12 41 41 H 1.07997 * 119.74655 * 179.70453 * 15 14 13 42 42 H 1.07996 * 119.87456 * 180.30205 * 16 15 14 43 43 H 1.07999 * 120.12771 * 179.75037 * 17 16 15 44 44 H 0.96989 * 120.00516 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1346 0.0000 4 6 1.4084 2.4397 -0.0006 5 6 1.8694 3.2953 1.1811 6 1 2.9517 3.4183 1.1400 7 6 1.1971 4.6678 1.1098 8 8 -0.2207 4.5010 1.0462 9 7 1.5000 2.6350 2.4356 10 6 2.1953 2.8905 3.5616 11 8 3.1263 3.6673 3.5364 12 6 1.8157 2.2108 4.8520 13 6 2.7425 2.6647 5.9502 14 6 3.8548 1.9190 6.2678 15 6 4.7056 2.3308 7.2817 16 6 4.4536 3.5024 7.9793 17 6 3.3475 4.2638 7.6789 18 6 2.4737 3.8523 6.6553 19 6 1.3342 4.6268 6.3375 20 1 0.9509 4.6345 5.3278 21 6 0.7032 5.3837 7.3312 22 7 -0.1088 6.3538 6.9981 23 14 1.0204 5.0086 9.1335 24 1 2.0922 5.9009 9.6437 25 1 -0.2238 5.2340 9.9124 26 1 1.4446 3.5928 9.2773 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 2.0470 -0.9352 -0.0004 31 1 3.2419 1.1346 -0.0004 32 1 0.3400 2.2424 0.0887 33 1 1.6031 2.9712 -0.9320 34 1 1.4553 5.2454 1.9974 35 1 1.5412 5.1953 0.2202 36 1 -0.7129 5.3320 0.9993 37 1 0.7553 2.0140 2.4558 38 1 1.8974 1.1306 4.7315 39 1 0.7895 2.4709 5.1114 40 1 4.0632 1.0070 5.7280 41 1 5.5734 1.7369 7.5274 42 1 5.1258 3.8163 8.7641 43 1 3.1510 5.1738 8.2262 44 1 -0.5464 6.8781 7.6868 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771611538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:48 Heat of formation + Delta-G solvation = -87.693077 kcal Electronic energy + Delta-G solvation = -25021.269873 eV Core-core repulsion = 21516.085115 eV Total energy + Delta-G solvation = -3505.184758 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.99641 -39.55326 -38.31628 -36.85893 -35.47170 -34.96458 -33.56765 -32.16560 -31.55838 -28.79218 -28.20094 -26.65435 -26.21520 -23.29770 -22.84498 -21.60420 -21.00978 -19.44371 -19.22985 -18.38727 -17.79747 -17.53376 -17.26387 -16.49675 -16.25845 -15.92865 -15.62900 -15.46004 -15.25437 -14.76318 -14.55590 -14.44265 -14.33833 -13.87269 -13.79182 -13.65244 -13.27155 -13.09997 -13.05672 -12.68137 -12.65453 -12.51240 -12.48272 -11.99380 -11.97857 -11.54617 -11.52485 -11.36138 -11.02617 -10.96445 -10.70873 -9.99520 -9.77525 -9.38690 -9.27154 -8.85279 -6.43092 0.81097 0.91561 1.27305 1.37644 1.40182 1.49489 1.85908 2.14581 2.38164 2.66891 3.38707 3.55953 3.78526 4.02001 4.11367 4.23761 4.29691 4.34248 4.38232 4.40848 4.46962 4.53397 4.58877 4.59660 4.74301 4.78424 4.85863 4.91192 4.94957 4.98603 5.01432 5.17723 5.20622 5.34211 5.39046 5.64329 5.69099 5.83483 5.88260 5.96850 6.00414 6.06907 6.31189 6.47314 6.70605 6.80383 6.82918 6.92578 7.46916 8.22788 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015801 B = 0.004478 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.604632 B = 6251.345825 C = 7228.383178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.159 4.159 3 C -0.171 4.171 4 C -0.086 4.086 5 C 0.153 3.847 6 H 0.081 0.919 7 C 0.067 3.933 8 O -0.575 6.575 9 N -0.709 5.709 10 C 0.518 3.482 11 O -0.577 6.577 12 C -0.075 4.075 13 C -0.170 4.170 14 C -0.080 4.080 15 C -0.229 4.229 16 C -0.092 4.092 17 C -0.257 4.257 18 C 0.083 3.917 19 C -0.468 4.468 20 H 0.055 0.945 21 C 0.049 3.951 22 N -0.852 5.852 23 Si 0.962 3.038 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.251 1.251 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.115 0.885 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.012 0.988 35 H 0.076 0.924 36 H 0.392 0.608 37 H 0.408 0.592 38 H 0.117 0.883 39 H 0.091 0.909 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.121 0.879 43 H 0.090 0.910 44 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.710 -10.290 -12.066 15.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.177 4.177 3 C -0.189 4.189 4 C -0.123 4.123 5 C 0.048 3.952 6 H 0.099 0.901 7 C -0.012 4.012 8 O -0.382 6.382 9 N -0.361 5.361 10 C 0.306 3.694 11 O -0.456 6.456 12 C -0.115 4.115 13 C -0.172 4.172 14 C -0.098 4.098 15 C -0.248 4.248 16 C -0.110 4.110 17 C -0.276 4.276 18 C 0.081 3.919 19 C -0.498 4.498 20 H 0.074 0.926 21 C -0.165 4.165 22 N -0.479 5.479 23 Si 0.787 3.213 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.175 1.175 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.121 0.879 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.031 0.969 35 H 0.094 0.906 36 H 0.241 0.759 37 H 0.244 0.756 38 H 0.135 0.865 39 H 0.109 0.891 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.139 0.861 43 H 0.108 0.892 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.094 -10.148 -12.065 15.766 hybrid contribution -0.394 1.082 0.746 1.372 sum -0.488 -9.066 -11.319 14.510 Atomic orbital electron populations 1.20909 0.92624 1.02767 1.02084 1.22969 0.96866 0.97765 1.00083 1.22788 0.99481 0.94380 1.02254 1.20875 1.01131 0.93763 0.96531 1.21008 0.98847 0.91040 0.84338 0.90110 1.22551 0.81917 0.97216 0.99545 1.86359 1.17547 1.36902 1.97396 1.45844 1.35132 1.47304 1.07823 1.21051 0.81435 0.81090 0.85806 1.90644 1.31601 1.37177 1.86208 1.20328 1.00352 1.01015 0.89759 1.19547 0.99488 0.96417 1.01699 1.20885 0.93368 0.98920 0.96602 1.20865 1.02844 0.99519 1.01576 1.20973 0.96084 0.95062 0.98903 1.21141 0.99180 1.02014 1.05257 1.17726 0.92114 0.90872 0.91202 1.19304 1.10811 1.22772 0.96878 0.92637 1.26756 0.92992 0.91588 1.05166 1.69735 1.25095 1.14927 1.38158 0.85534 0.77228 0.81117 0.77457 1.19394 1.20426 1.17502 0.91260 0.91259 0.91838 0.86711 0.87895 0.89222 0.88540 0.96918 0.90568 0.75880 0.75647 0.86512 0.89110 0.85694 0.85398 0.86083 0.89182 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.65 71.24 0.62 -1.29 16 2 C -0.16 -2.72 10.26 25.64 0.26 -2.45 16 3 C -0.17 -3.32 9.25 25.64 0.24 -3.08 16 4 C -0.09 -1.72 4.72 29.85 0.14 -1.58 16 5 C 0.15 4.18 2.36 44.99 0.11 4.29 16 6 H 0.08 2.48 7.58 -2.39 -0.02 2.46 16 7 C 0.07 1.88 6.85 71.98 0.49 2.37 16 8 O -0.57 -14.77 12.83 -148.98 -1.91 -16.68 16 9 N -0.71 -21.78 4.74 -442.52 -2.10 -23.87 16 10 C 0.52 20.79 7.41 87.66 0.65 21.44 16 11 O -0.58 -28.60 15.70 -3.03 -0.05 -28.65 16 12 C -0.08 -2.92 5.19 29.10 0.15 -2.77 16 13 C -0.17 -7.89 4.43 -19.41 -0.09 -7.98 16 14 C -0.08 -3.30 9.66 22.22 0.21 -3.08 16 15 C -0.23 -9.27 10.05 22.46 0.23 -9.04 16 16 C -0.09 -4.04 10.02 22.22 0.22 -3.81 16 17 C -0.26 -13.01 7.17 22.73 0.16 -12.84 16 18 C 0.08 4.42 5.10 -21.29 -0.11 4.31 16 19 C -0.47 -26.74 8.56 23.46 0.20 -26.54 16 20 H 0.06 3.43 7.00 -2.91 -0.02 3.41 16 21 C 0.05 2.68 5.41 85.26 0.46 3.15 16 22 N -0.85 -47.86 13.93 21.83 0.30 -47.55 16 23 Si 0.96 44.44 24.52 68.60 1.68 46.13 16 24 H -0.27 -12.05 6.71 99.48 0.67 -11.38 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 26 H -0.25 -11.76 6.86 99.48 0.68 -11.07 16 27 H 0.07 0.98 7.85 -2.39 -0.02 0.96 16 28 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.06 1.02 7.66 -2.39 -0.02 1.00 16 30 H 0.11 1.75 8.06 -2.92 -0.02 1.73 16 31 H 0.10 2.07 8.06 -2.91 -0.02 2.04 16 32 H 0.09 1.78 5.38 -2.38 -0.01 1.77 16 33 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.39 7.40 9.12 -74.06 -0.68 6.73 16 37 H 0.41 10.62 8.60 -92.71 -0.80 9.82 16 38 H 0.12 3.51 8.05 -2.39 -0.02 3.49 16 39 H 0.09 3.70 7.14 -2.39 -0.02 3.68 16 40 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 41 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 42 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 43 H 0.09 4.60 4.77 -2.91 -0.01 4.59 16 44 H 0.29 14.73 8.30 -92.72 -0.77 13.96 16 Total: -1.00 -71.46 361.76 1.36 -70.10 By element: Atomic # 1 Polarization: 39.96 SS G_CDS: -0.52 Total: 39.44 kcal Atomic # 6 Polarization: -42.86 SS G_CDS: 3.95 Total: -38.91 kcal Atomic # 7 Polarization: -69.64 SS G_CDS: -1.79 Total: -71.43 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -1.96 Total: -45.33 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.68 Total: 46.13 kcal Total: -71.46 1.36 -70.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771611538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.595 kcal (2) G-P(sol) polarization free energy of solvation -71.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds