Wall clock time and date at job start Tue Mar 31 2020 07:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.54239 * 2 1 4 4 C 1.34784 * 119.99968 * 59.81771 * 3 2 1 5 5 O 1.21280 * 119.99871 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99906 * 180.02562 * 4 3 2 7 7 C 1.50700 * 109.46813 * 180.02562 * 6 4 3 8 8 C 1.37640 * 120.13180 * 265.30632 * 7 6 4 9 9 C 1.38613 * 120.24862 * 180.32332 * 8 7 6 10 10 C 1.38655 * 120.50174 * 359.67182 * 9 8 7 11 11 C 1.37598 * 120.24576 * 359.97438 * 10 9 8 12 12 C 1.40702 * 120.12495 * 85.00356 * 7 6 4 13 13 C 1.41393 * 120.24620 * 359.97406 * 12 7 6 14 14 H 1.07999 * 119.99787 * 29.07372 * 13 12 7 15 15 C 1.39938 * 120.00244 * 209.07592 * 13 12 7 16 16 N 1.30823 * 120.00241 * 197.10039 * 15 13 12 17 17 Si 1.86803 * 119.99882 * 17.09514 * 15 13 12 18 18 H 1.48495 * 109.47432 * 270.00073 * 17 15 13 19 19 H 1.48498 * 109.46929 * 30.00589 * 17 15 13 20 20 H 1.48504 * 109.46998 * 150.00206 * 17 15 13 21 21 C 1.53175 * 109.61728 * 120.22062 * 2 1 3 22 22 C 1.53091 * 109.16318 * 176.89494 * 21 2 1 23 23 O 1.42894 * 109.41604 * 302.39201 * 22 21 2 24 24 C 1.42901 * 114.10231 * 61.15720 * 23 22 21 25 25 C 1.53093 * 109.41272 * 298.84532 * 24 23 22 26 26 H 1.08998 * 109.47474 * 60.00619 * 1 2 3 27 27 H 1.09006 * 109.47120 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47619 * 299.99546 * 1 2 3 29 29 H 0.96998 * 120.00101 * 239.82584 * 3 2 1 30 30 H 1.08999 * 109.47299 * 60.00523 * 6 4 3 31 31 H 1.08998 * 109.47401 * 299.99992 * 6 4 3 32 32 H 1.08005 * 119.87130 * 0.02562 * 8 7 6 33 33 H 1.08001 * 119.74473 * 179.69460 * 9 8 7 34 34 H 1.08002 * 119.87493 * 180.02562 * 10 9 8 35 35 H 1.08003 * 120.12022 * 180.02562 * 11 10 9 36 36 H 0.97004 * 119.99819 * 355.45620 * 16 15 13 37 37 H 1.09008 * 109.52490 * 296.79958 * 21 2 1 38 38 H 1.08996 * 109.52362 * 56.98885 * 21 2 1 39 39 H 1.09003 * 109.48046 * 182.40415 * 22 21 2 40 40 H 1.09003 * 109.49047 * 62.38431 * 22 21 2 41 41 H 1.08996 * 109.48565 * 178.86117 * 24 23 22 42 42 H 1.09006 * 109.48807 * 58.83152 * 24 23 22 43 43 H 1.08998 * 109.52456 * 297.69660 * 25 24 23 44 44 H 1.08999 * 109.52043 * 177.51007 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0200 1.3806 0.0000 4 6 1.6924 2.2120 1.0090 5 8 0.9923 1.8170 1.9172 6 6 2.1960 3.6324 1.0087 7 6 1.6915 4.3444 2.2373 8 6 0.5392 5.0948 2.1767 9 6 0.0765 5.7562 3.3036 10 6 0.7632 5.6650 4.5047 11 6 1.9134 4.9147 4.5903 12 6 2.3931 4.2396 3.4524 13 6 3.5742 3.4660 3.5284 14 1 4.1980 3.3457 2.6550 15 6 3.9348 2.8562 4.7352 16 7 5.1593 2.4312 4.9131 17 14 2.6678 2.6490 6.0921 18 1 2.6892 3.8423 6.9757 19 1 1.3180 2.5024 5.4908 20 1 2.9892 1.4375 6.8886 21 6 2.0442 -0.7262 1.2467 22 6 3.5731 -0.7882 1.1975 23 8 3.9833 -1.4474 -0.0021 24 6 3.5714 -0.7876 -1.2008 25 6 2.0424 -0.7256 -1.2479 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 2.5801 1.6964 -0.7262 30 1 1.8355 4.1455 0.1172 31 1 3.2860 3.6314 1.0117 32 1 -0.0039 5.1724 1.2464 33 1 -0.8259 6.3467 3.2456 34 1 0.3934 6.1842 5.3766 35 1 2.4465 4.8447 5.5270 36 1 5.7996 2.4787 4.1860 37 1 1.7302 -0.1848 2.1392 38 1 1.6393 -1.7379 1.2720 39 1 3.9425 -1.3414 2.0610 40 1 3.9787 0.2234 1.2133 41 1 3.9395 -1.3404 -2.0650 42 1 3.9769 0.2241 -1.2168 43 1 1.6375 -1.7373 -1.2731 44 1 1.7272 -0.1838 -2.1395 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777053709.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:08 Heat of formation + Delta-G solvation = -95.079233 kcal Electronic energy + Delta-G solvation = -26160.635226 eV Core-core repulsion = 22655.130180 eV Total energy + Delta-G solvation = -3505.505046 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.67327 -40.06057 -39.03051 -36.47115 -35.58909 -33.82028 -32.57531 -32.15765 -31.98200 -29.38832 -28.45354 -26.39030 -24.71771 -24.05746 -23.25863 -22.45773 -21.01336 -20.26969 -20.01132 -18.13788 -17.39264 -17.09568 -17.02967 -16.62709 -16.50561 -16.06961 -15.75185 -15.53172 -15.40298 -14.90629 -14.73095 -14.38429 -13.90174 -13.85149 -13.66109 -13.61884 -13.26961 -13.06824 -13.03839 -12.91319 -12.68886 -12.56173 -12.31228 -12.15425 -11.94161 -11.64011 -11.58553 -11.42706 -11.13711 -10.86297 -10.70646 -10.40376 -9.91460 -9.55082 -9.32955 -9.13574 -6.46963 0.82503 0.91273 1.30591 1.50359 1.71376 1.88311 2.15022 2.33222 2.71587 2.87982 3.51519 3.59101 3.79086 3.84781 3.98409 4.07305 4.17731 4.27084 4.32295 4.37863 4.46773 4.55463 4.63426 4.68679 4.69474 4.70161 4.73948 4.79212 4.90874 4.92070 4.98646 5.06260 5.08687 5.13764 5.26046 5.34152 5.51975 5.62206 5.70464 5.84232 5.90820 6.03953 6.17945 6.19790 6.49545 6.70596 6.76810 6.90050 7.50716 8.08258 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015163 B = 0.005978 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.198907 B = 4682.631136 C = 5715.187635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.174 3.826 3 N -0.721 5.721 4 C 0.522 3.478 5 O -0.556 6.556 6 C -0.074 4.074 7 C -0.172 4.172 8 C -0.079 4.079 9 C -0.231 4.231 10 C -0.089 4.089 11 C -0.266 4.266 12 C 0.086 3.914 13 C -0.528 4.528 14 H 0.058 0.942 15 C 0.017 3.983 16 N -0.852 5.852 17 Si 1.096 2.904 18 H -0.261 1.261 19 H -0.277 1.277 20 H -0.288 1.288 21 C -0.163 4.163 22 C 0.072 3.928 23 O -0.396 6.396 24 C 0.050 3.950 25 C -0.144 4.144 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.408 0.592 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.095 0.905 36 H 0.277 0.723 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.031 0.969 41 H 0.122 0.878 42 H 0.051 0.949 43 H 0.096 0.904 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.123 -4.272 -14.503 16.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.088 3.912 3 N -0.375 5.375 4 C 0.310 3.690 5 O -0.433 6.433 6 C -0.114 4.114 7 C -0.173 4.173 8 C -0.097 4.097 9 C -0.250 4.250 10 C -0.107 4.107 11 C -0.285 4.285 12 C 0.084 3.916 13 C -0.559 4.559 14 H 0.076 0.924 15 C -0.197 4.197 16 N -0.478 5.478 17 Si 0.921 3.079 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.216 1.216 21 C -0.202 4.202 22 C -0.005 4.005 23 O -0.315 6.315 24 C -0.027 4.027 25 C -0.181 4.181 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.064 0.936 29 H 0.244 0.756 30 H 0.134 0.866 31 H 0.102 0.898 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.049 0.951 41 H 0.140 0.860 42 H 0.069 0.931 43 H 0.115 0.885 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.600 -5.294 -12.333 14.956 hybrid contribution 0.913 0.946 -1.346 1.882 sum -5.687 -4.347 -13.679 15.439 Atomic orbital electron populations 1.22107 0.93828 1.02829 1.02484 1.20364 0.94526 0.80940 0.95328 1.46084 1.54336 1.11496 1.25634 1.20849 0.79263 0.87950 0.80984 1.90615 1.38661 1.77495 1.36553 1.20331 1.01584 0.91692 0.97751 1.19489 0.98021 1.04650 0.95178 1.20874 0.94633 0.95873 0.98343 1.20867 1.03011 1.07756 0.93380 1.20985 0.94385 0.97301 0.98042 1.21283 1.01933 1.06362 0.98933 1.17778 0.91548 0.90169 0.92145 1.20418 1.07322 1.29805 0.98312 0.92392 1.27749 0.98777 0.91417 1.01708 1.70612 1.03215 1.39609 1.34338 0.83270 0.74039 0.76805 0.73794 1.18662 1.20248 1.21560 1.22525 0.96236 1.01490 0.99949 1.22320 0.94156 0.96440 0.87569 1.87888 1.77538 1.51742 1.14317 1.22865 0.94075 0.98181 0.87533 1.22448 0.96458 1.02455 0.96778 0.91122 0.90553 0.93567 0.75553 0.86648 0.89799 0.85795 0.85509 0.86004 0.88683 0.91260 0.92232 0.89629 0.89897 0.95075 0.86048 0.93088 0.88502 0.87399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 8.42 71.98 0.61 -3.24 16 2 C 0.17 4.38 0.66 3.72 0.00 4.38 16 3 N -0.72 -19.54 4.23 -422.38 -1.79 -21.33 16 4 C 0.52 19.26 7.24 87.66 0.63 19.89 16 5 O -0.56 -25.62 12.25 -3.03 -0.04 -25.66 16 6 C -0.07 -2.69 5.36 29.10 0.16 -2.53 16 7 C -0.17 -7.67 4.43 -19.40 -0.09 -7.76 16 8 C -0.08 -3.17 9.66 22.22 0.21 -2.96 16 9 C -0.23 -9.15 10.05 22.46 0.23 -8.92 16 10 C -0.09 -3.83 10.02 22.22 0.22 -3.60 16 11 C -0.27 -13.23 7.26 22.73 0.16 -13.06 16 12 C 0.09 4.44 5.13 -21.29 -0.11 4.34 16 13 C -0.53 -29.09 8.80 23.46 0.21 -28.88 16 14 H 0.06 3.25 6.60 -2.91 -0.02 3.23 16 15 C 0.02 0.93 5.42 85.26 0.46 1.40 16 16 N -0.85 -48.49 13.65 21.82 0.30 -48.19 16 17 Si 1.10 54.29 24.89 68.60 1.71 56.00 16 18 H -0.26 -11.90 6.45 99.48 0.64 -11.26 16 19 H -0.28 -14.41 7.01 99.48 0.70 -13.72 16 20 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 21 C -0.16 -5.13 4.77 30.68 0.15 -4.99 16 22 C 0.07 2.33 6.68 72.01 0.48 2.81 16 23 O -0.40 -11.04 10.76 -148.98 -1.60 -12.64 16 24 C 0.05 0.95 6.67 72.01 0.48 1.43 16 25 C -0.14 -2.42 4.96 30.68 0.15 -2.27 16 26 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.05 1.53 6.16 -2.39 -0.01 1.51 16 29 H 0.41 8.39 7.52 -92.71 -0.70 7.69 16 30 H 0.12 3.18 8.06 -2.39 -0.02 3.16 16 31 H 0.08 3.17 6.51 -2.39 -0.02 3.15 16 32 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 33 H 0.13 4.12 8.06 -2.91 -0.02 4.09 16 34 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 35 H 0.10 4.78 4.43 -2.91 -0.01 4.77 16 36 H 0.28 15.42 8.73 -92.71 -0.81 14.61 16 37 H 0.06 2.41 6.14 -2.38 -0.01 2.40 16 38 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 40 H 0.03 1.14 7.75 -2.39 -0.02 1.12 16 41 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.05 0.95 7.09 -2.38 -0.02 0.94 16 43 H 0.10 1.48 8.14 -2.39 -0.02 1.47 16 44 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -69.01 342.05 2.74 -66.27 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: 0.20 Total: 29.53 kcal Atomic # 6 Polarization: -47.94 SS G_CDS: 3.96 Total: -43.98 kcal Atomic # 7 Polarization: -68.03 SS G_CDS: -1.49 Total: -69.52 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -1.64 Total: -38.30 kcal Atomic # 14 Polarization: 54.29 SS G_CDS: 1.71 Total: 56.00 kcal Total: -69.01 2.74 -66.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777053709.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.809 kcal (2) G-P(sol) polarization free energy of solvation -69.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds