Wall clock time and date at job start Tue Mar 31 2020 07:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 112.90448 * 2 1 4 4 C 1.53782 * 113.61322 * 228.75250 * 2 1 3 5 5 H 1.08998 * 113.61315 * 334.56555 * 4 2 1 6 6 O 1.42901 * 113.61608 * 105.46853 * 4 2 1 7 7 C 1.54054 * 87.07513 * 220.01839 * 4 2 1 8 8 C 1.53779 * 113.61399 * 131.25224 * 2 1 3 9 9 H 1.08997 * 113.61350 * 254.61053 * 8 2 1 10 10 N 1.46497 * 113.61507 * 25.43456 * 8 2 1 11 11 C 1.34770 * 119.99825 * 203.46947 * 10 8 2 12 12 O 1.21282 * 120.00329 * 0.02562 * 11 10 8 13 13 C 1.50703 * 119.99991 * 179.97438 * 11 10 8 14 14 C 1.50696 * 109.47342 * 179.97438 * 13 11 10 15 15 C 1.37636 * 120.13417 * 264.98162 * 14 13 11 16 16 C 1.38608 * 120.25287 * 180.02562 * 15 14 13 17 17 C 1.38658 * 120.50201 * 359.97438 * 16 15 14 18 18 C 1.37598 * 120.24638 * 0.02562 * 17 16 15 19 19 C 1.40698 * 120.12420 * 85.00482 * 14 13 11 20 20 C 1.41393 * 120.24547 * 359.95234 * 19 14 13 21 21 H 1.07997 * 120.00502 * 334.06352 * 20 19 14 22 22 C 1.39948 * 119.99853 * 154.05595 * 20 19 14 23 23 N 1.30819 * 120.00418 * 343.68605 * 22 20 19 24 24 Si 1.86800 * 119.99809 * 163.68063 * 22 20 19 25 25 H 1.48498 * 109.47057 * 94.96610 * 24 22 20 26 26 H 1.48505 * 109.47009 * 214.96678 * 24 22 20 27 27 H 1.48501 * 109.47163 * 334.96370 * 24 22 20 28 28 H 1.08994 * 109.47005 * 288.74953 * 1 2 3 29 29 H 1.09004 * 109.46941 * 48.74556 * 1 2 3 30 30 H 1.08992 * 109.47005 * 168.74365 * 1 2 3 31 31 H 1.09002 * 109.47025 * 191.25199 * 3 2 1 32 32 H 1.09003 * 109.47535 * 311.25077 * 3 2 1 33 33 H 1.08996 * 109.47062 * 71.25501 * 3 2 1 34 34 H 0.96694 * 113.99887 * 179.97438 * 6 4 2 35 35 H 1.08995 * 113.61487 * 270.92527 * 7 4 2 36 36 H 1.09001 * 113.69493 * 139.94448 * 7 4 2 37 37 H 0.97000 * 119.99787 * 23.47193 * 10 8 2 38 38 H 1.09000 * 109.47115 * 60.00192 * 13 11 10 39 39 H 1.09002 * 109.47634 * 300.00332 * 13 11 10 40 40 H 1.08003 * 119.87397 * 0.02562 * 15 14 13 41 41 H 1.07998 * 119.74910 * 180.02562 * 16 15 14 42 42 H 1.07999 * 119.87804 * 180.28240 * 17 16 15 43 43 H 1.07995 * 120.12520 * 179.97438 * 18 17 16 44 44 H 0.97002 * 120.00448 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1460 -0.9290 -1.0594 5 1 1.4945 -1.7535 -1.3490 6 8 2.6953 -0.2338 -2.1806 7 6 3.1941 -1.3142 0.0019 8 6 2.1460 -0.9291 1.0593 9 1 2.5638 -0.3989 1.9152 10 7 1.2704 -2.0372 1.4485 11 6 1.4326 -2.6359 2.6450 12 8 2.3031 -2.2570 3.3997 13 6 0.5315 -3.7755 3.0456 14 6 0.9194 -4.2643 4.4173 15 6 1.7789 -5.3306 4.5534 16 6 2.1369 -5.7826 5.8139 17 6 1.6353 -5.1675 6.9508 18 6 0.7746 -4.0998 6.8387 19 6 0.4038 -3.6327 5.5640 20 6 -0.4796 -2.5360 5.4366 21 1 -0.4482 -1.9172 4.5521 22 6 -1.3949 -2.2527 6.4567 23 7 -1.6632 -3.1558 7.3643 24 14 -2.2332 -0.5847 6.5224 25 1 -3.5523 -0.6666 5.8452 26 1 -2.4281 -0.1841 7.9391 27 1 -1.3857 0.4228 5.8353 28 1 -0.3633 0.3303 0.9731 29 1 -0.3633 0.6777 -0.7726 30 1 -0.3633 -1.0078 -0.2006 31 1 3.1954 1.3518 -0.2005 32 1 1.6428 2.0079 -0.7726 33 1 1.9627 1.8726 0.9731 34 1 3.0845 -0.8128 -2.8502 35 1 4.0725 -0.6688 0.0024 36 1 3.4467 -2.3745 0.0034 37 1 0.5740 -2.3400 0.8450 38 1 0.6340 -4.5894 2.3279 39 1 -0.5031 -3.4327 3.0608 40 1 2.1760 -5.8170 3.6746 41 1 2.8123 -6.6197 5.9112 42 1 1.9246 -5.5250 7.9280 43 1 0.3848 -3.6225 7.7256 44 1 -2.2973 -2.9592 8.0715 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779230399.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:20 Heat of formation + Delta-G solvation = -56.210970 kcal Electronic energy + Delta-G solvation = -25072.688471 eV Core-core repulsion = 21568.868879 eV Total energy + Delta-G solvation = -3503.819592 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.66551 -38.67444 -37.18105 -35.53693 -33.59508 -32.89102 -31.61013 -30.42249 -29.42410 -27.54430 -26.87055 -25.08178 -24.05410 -22.69504 -20.91530 -20.58780 -19.38516 -18.52440 -17.60002 -17.13228 -16.29551 -15.84614 -15.32785 -15.19638 -14.73801 -14.43079 -14.31900 -13.68777 -13.65206 -13.39306 -13.16773 -12.87946 -12.55807 -12.47311 -12.20451 -12.01337 -11.93180 -11.69228 -11.55368 -11.21906 -11.15195 -11.05453 -10.95441 -10.80545 -10.67134 -10.37536 -10.25715 -9.78493 -9.45892 -9.35669 -9.16645 -9.12081 -8.68377 -7.28599 -7.26376 -6.71285 -4.31597 2.80355 2.98583 3.08334 3.13909 3.28911 3.31951 3.58221 3.95740 3.99541 4.26941 4.49398 4.68683 4.73539 4.76303 5.08213 5.28346 5.44212 5.54409 5.61411 5.68922 5.74626 5.79860 5.84948 5.86805 5.92124 5.99475 6.07290 6.17726 6.22143 6.30097 6.31909 6.45173 6.53549 6.82519 6.85146 7.11273 7.32274 7.44998 7.45946 7.66745 7.89965 7.97779 8.10341 8.15890 8.34262 8.67581 8.87694 8.94502 9.04395 10.22965 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014573 B = 0.004543 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.909778 B = 6161.649801 C = 7637.570613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.081 4.081 3 C -0.116 4.116 4 C 0.084 3.916 5 H 0.079 0.921 6 O -0.556 6.556 7 C -0.181 4.181 8 C 0.134 3.866 9 H 0.105 0.895 10 N -0.728 5.728 11 C 0.517 3.483 12 O -0.517 6.517 13 C -0.070 4.070 14 C -0.181 4.181 15 C -0.081 4.081 16 C -0.240 4.240 17 C -0.107 4.107 18 C -0.159 4.159 19 C 0.129 3.871 20 C -0.456 4.456 21 H 0.074 0.926 22 C 0.077 3.923 23 N -0.795 5.795 24 Si 0.901 3.099 25 H -0.271 1.271 26 H -0.275 1.275 27 H -0.261 1.261 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.374 0.626 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.395 0.605 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.117 0.883 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.391 4.218 -15.318 16.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.082 4.082 3 C -0.174 4.174 4 C 0.025 3.975 5 H 0.097 0.903 6 O -0.361 6.361 7 C -0.221 4.221 8 C 0.027 3.973 9 H 0.123 0.877 10 N -0.382 5.382 11 C 0.305 3.695 12 O -0.390 6.390 13 C -0.110 4.110 14 C -0.183 4.183 15 C -0.099 4.099 16 C -0.259 4.259 17 C -0.126 4.126 18 C -0.178 4.178 19 C 0.127 3.873 20 C -0.486 4.486 21 H 0.092 0.908 22 C -0.140 4.140 23 N -0.421 5.421 24 Si 0.725 3.275 25 H -0.196 1.196 26 H -0.200 1.200 27 H -0.185 1.185 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.221 0.779 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.229 0.771 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.134 0.866 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.659 4.961 -14.169 15.246 hybrid contribution -0.556 -0.018 -0.499 0.747 sum 2.103 4.943 -14.668 15.620 Atomic orbital electron populations 1.21709 0.93513 1.01693 1.02591 1.22386 0.95930 0.96022 0.93852 1.21376 1.01072 0.93296 1.01611 1.23652 0.94887 0.94234 0.84721 0.90309 1.86517 1.79037 1.37419 1.33154 1.24151 0.98540 1.02357 0.97011 1.21641 0.90981 0.88210 0.96431 0.87656 1.45897 1.36770 1.35731 1.19776 1.21279 0.84842 0.83712 0.79716 1.90682 1.33922 1.63683 1.50746 1.20266 0.99531 0.94640 0.96567 1.19042 1.07000 1.00088 0.92196 1.20289 0.97353 0.96727 0.95570 1.20298 1.08155 1.04520 0.92937 1.20675 0.98394 0.97326 0.96167 1.21292 0.99756 0.98723 0.98078 1.17331 0.89243 0.90399 0.90319 1.19468 1.14915 1.10819 1.03375 0.90790 1.25869 0.96097 0.97587 0.94438 1.69819 1.27423 1.32973 1.11899 0.86415 0.79594 0.82911 0.78531 1.19637 1.20036 1.18505 0.91536 0.92270 0.92579 0.91919 0.92054 0.92335 0.77915 0.88764 0.90907 0.77075 0.90683 0.88548 0.89833 0.89703 0.89606 0.86561 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.58 37.16 0.32 -1.11 16 2 C -0.08 -0.89 1.34 -153.69 -0.21 -1.10 16 3 C -0.12 -1.25 8.46 37.16 0.31 -0.94 16 4 C 0.08 0.82 4.52 -25.77 -0.12 0.71 16 5 H 0.08 0.68 7.96 -51.93 -0.41 0.27 16 6 O -0.56 -5.21 12.76 -35.23 -0.45 -5.66 16 7 C -0.18 -2.06 7.38 -25.77 -0.19 -2.25 16 8 C 0.13 1.80 3.75 -67.12 -0.25 1.55 16 9 H 0.11 1.70 7.46 -51.93 -0.39 1.31 16 10 N -0.73 -10.39 4.80 -53.02 -0.25 -10.65 16 11 C 0.52 9.92 7.46 -10.99 -0.08 9.84 16 12 O -0.52 -12.36 15.65 5.56 0.09 -12.27 16 13 C -0.07 -1.36 5.18 -29.04 -0.15 -1.51 16 14 C -0.18 -4.37 4.43 -103.92 -0.46 -4.83 16 15 C -0.08 -1.88 9.66 -39.66 -0.38 -2.26 16 16 C -0.24 -5.63 10.05 -39.29 -0.39 -6.03 16 17 C -0.11 -2.64 10.02 -39.66 -0.40 -3.04 16 18 C -0.16 -4.29 8.69 -38.87 -0.34 -4.62 16 19 C 0.13 3.47 5.56 -106.82 -0.59 2.88 16 20 C -0.46 -12.01 8.14 -37.74 -0.31 -12.32 16 21 H 0.07 1.89 6.68 -52.49 -0.35 1.54 16 22 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 23 N -0.80 -20.59 10.97 55.55 0.61 -19.99 16 24 Si 0.90 18.91 29.59 -169.99 -5.03 13.89 16 25 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 26 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 27 H -0.26 -5.56 7.11 56.52 0.40 -5.15 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.51 6.60 -51.93 -0.34 0.17 16 31 H 0.06 0.68 7.19 -51.93 -0.37 0.30 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.37 1.98 9.12 45.56 0.42 2.40 16 35 H 0.09 1.05 7.65 -51.93 -0.40 0.66 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.39 4.46 7.12 -40.82 -0.29 4.17 16 38 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 39 H 0.10 1.83 7.06 -51.93 -0.37 1.46 16 40 H 0.08 1.70 8.06 -52.48 -0.42 1.28 16 41 H 0.08 1.77 8.06 -52.49 -0.42 1.34 16 42 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 43 H 0.12 3.22 6.22 -52.49 -0.33 2.89 16 44 H 0.28 6.59 8.30 -40.82 -0.34 6.26 16 LS Contribution 357.75 15.07 5.39 5.39 Total: -1.00 -31.64 357.75 -8.74 -40.38 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -5.77 Total: 12.08 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -3.33 Total: -23.17 kcal Atomic # 7 Polarization: -30.99 SS G_CDS: 0.35 Total: -30.63 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.36 Total: -17.94 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.64 -8.74 -40.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779230399.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.830 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds