Wall clock time and date at job start Tue Mar 31 2020 07:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 112.91004 * 2 1 4 4 C 1.53778 * 113.61716 * 228.74409 * 2 1 3 5 5 H 1.08999 * 113.69239 * 156.32798 * 4 2 1 6 6 O 1.42906 * 113.61195 * 25.43635 * 4 2 1 7 7 C 1.53779 * 87.08241 * 270.88695 * 4 2 1 8 8 C 1.53779 * 87.07914 * 334.56596 * 7 4 2 9 9 H 1.08998 * 113.61622 * 270.79701 * 8 7 4 10 10 N 1.46505 * 113.61112 * 139.98314 * 8 7 4 11 11 C 1.34781 * 120.00081 * 104.50868 * 10 8 7 12 12 O 1.21283 * 119.99787 * 359.97438 * 11 10 8 13 13 C 1.50699 * 120.00265 * 179.97438 * 11 10 8 14 14 C 1.50697 * 109.47353 * 179.97438 * 13 11 10 15 15 C 1.37638 * 120.12671 * 265.02289 * 14 13 11 16 16 C 1.38617 * 120.24649 * 179.97438 * 15 14 13 17 17 C 1.38653 * 120.49947 * 359.97438 * 16 15 14 18 18 C 1.37596 * 120.25120 * 0.02562 * 17 16 15 19 19 C 1.40700 * 120.12652 * 84.99856 * 14 13 11 20 20 C 1.41399 * 120.24276 * 359.97438 * 19 14 13 21 21 H 1.07993 * 120.00505 * 334.05617 * 20 19 14 22 22 C 1.39945 * 119.99475 * 154.05720 * 20 19 14 23 23 N 1.30820 * 120.00362 * 343.67773 * 22 20 19 24 24 Si 1.86800 * 119.99690 * 163.67471 * 22 20 19 25 25 H 1.48497 * 109.47509 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47141 * 119.99987 * 24 22 20 27 27 H 1.48505 * 109.47397 * 240.00275 * 24 22 20 28 28 H 1.08992 * 109.47583 * 288.75025 * 1 2 3 29 29 H 1.09003 * 109.47234 * 48.75286 * 1 2 3 30 30 H 1.08999 * 109.47202 * 168.74705 * 1 2 3 31 31 H 1.08995 * 109.47580 * 191.25266 * 3 2 1 32 32 H 1.09004 * 109.46652 * 311.24948 * 3 2 1 33 33 H 1.09004 * 109.47010 * 71.24532 * 3 2 1 34 34 H 0.96705 * 113.99714 * 182.99962 * 6 4 2 35 35 H 1.09001 * 113.61593 * 220.02139 * 7 4 2 36 36 H 1.08999 * 113.61952 * 89.11577 * 7 4 2 37 37 H 0.96997 * 119.99896 * 284.50178 * 10 8 7 38 38 H 1.08993 * 109.47080 * 59.99174 * 13 11 10 39 39 H 1.09001 * 109.46452 * 299.99882 * 13 11 10 40 40 H 1.07996 * 119.87564 * 359.97367 * 15 14 13 41 41 H 1.07999 * 119.74905 * 180.02562 * 16 15 14 42 42 H 1.08000 * 119.87416 * 180.28370 * 17 16 15 43 43 H 1.08004 * 120.12564 * 179.97438 * 18 17 16 44 44 H 0.97001 * 119.99960 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1460 -0.9291 -1.0592 5 1 3.1591 -0.6510 -1.3499 6 8 1.2919 -1.1645 -2.1805 7 6 2.0929 -2.0425 0.0001 8 6 2.1459 -0.9290 1.0594 9 1 3.1589 -0.6508 1.3501 10 7 1.2702 -1.1703 2.2088 11 6 1.7954 -1.5704 3.3839 12 8 2.9929 -1.7310 3.4896 13 6 0.8947 -1.8181 4.5665 14 6 1.7239 -2.2533 5.7471 15 6 1.8954 -3.5925 6.0147 16 6 2.6580 -3.9956 7.0997 17 6 3.2567 -3.0573 7.9266 18 6 3.0988 -1.7133 7.6781 19 6 2.3262 -1.2923 6.5797 20 6 2.1579 0.0862 6.3138 21 1 1.9525 0.4211 5.3079 22 6 2.2574 1.0167 7.3544 23 7 2.1856 0.6174 8.5981 24 14 2.4929 2.8289 6.9675 25 1 2.5417 3.0186 5.4955 26 1 1.3591 3.6064 7.5289 27 1 3.7647 3.3027 7.5704 28 1 -0.3634 0.3303 0.9730 29 1 -0.3634 0.6776 -0.7727 30 1 -0.3633 -1.0079 -0.2005 31 1 3.1954 1.3517 -0.2005 32 1 1.6428 2.0077 -0.7727 33 1 1.9626 1.8726 0.9731 34 1 1.6549 -1.7842 -2.8282 35 1 2.9716 -2.6874 0.0003 36 1 1.1568 -2.6010 0.0002 37 1 0.3125 -1.0421 2.1242 38 1 0.1769 -2.6000 4.3189 39 1 0.3612 -0.9007 4.8151 40 1 1.4340 -4.3319 5.3770 41 1 2.7876 -5.0486 7.3021 42 1 3.8526 -3.3827 8.7665 43 1 3.5657 -0.9841 8.3237 44 1 2.2549 1.2623 9.3194 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779230415.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:42 Heat of formation + Delta-G solvation = -57.671036 kcal Electronic energy + Delta-G solvation = -25039.851824 eV Core-core repulsion = 21535.968919 eV Total energy + Delta-G solvation = -3503.882905 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 6.76 seconds Orbital eigenvalues (eV) -40.59641 -38.68176 -37.17544 -35.53826 -33.58363 -32.88216 -31.58206 -30.52954 -29.41275 -27.60499 -26.94569 -25.08190 -23.82558 -22.68417 -20.89842 -20.45286 -19.39376 -18.57257 -17.70806 -17.12138 -16.34373 -15.71689 -15.38534 -15.01448 -14.87077 -14.51797 -14.29837 -13.66368 -13.51624 -13.25732 -13.17156 -12.87860 -12.56528 -12.54307 -12.34706 -12.15580 -11.73295 -11.68682 -11.53518 -11.24009 -11.10352 -10.95517 -10.90580 -10.76941 -10.65815 -10.47710 -10.35698 -9.87676 -9.44511 -9.33483 -9.14238 -9.08732 -8.61274 -7.27287 -7.25065 -6.70274 -4.30531 2.80840 3.00583 3.09353 3.14566 3.29537 3.35051 3.62080 3.96427 4.06989 4.26220 4.52408 4.69477 4.70059 4.75196 5.08297 5.27768 5.40139 5.50560 5.57001 5.62779 5.74701 5.80917 5.84468 5.87165 5.91541 6.00005 6.08022 6.18117 6.23297 6.32027 6.35247 6.47438 6.54821 6.83999 6.87092 7.12538 7.33470 7.44548 7.46177 7.68216 7.93443 8.00996 8.12103 8.17001 8.35546 8.68913 8.91237 8.95797 9.05563 10.24053 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.004510 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.460890 B = 6206.598492 C = 7669.617757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 C -0.139 4.139 4 C 0.086 3.914 5 H 0.083 0.917 6 O -0.555 6.555 7 C -0.183 4.183 8 C 0.137 3.863 9 H 0.114 0.886 10 N -0.732 5.732 11 C 0.516 3.484 12 O -0.521 6.521 13 C -0.072 4.072 14 C -0.180 4.180 15 C -0.081 4.081 16 C -0.239 4.239 17 C -0.107 4.107 18 C -0.159 4.159 19 C 0.129 3.871 20 C -0.456 4.456 21 H 0.074 0.926 22 C 0.077 3.923 23 N -0.796 5.796 24 Si 0.902 3.098 25 H -0.262 1.262 26 H -0.275 1.275 27 H -0.272 1.272 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.375 0.625 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.397 0.603 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.116 0.884 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.409 0.072 -15.943 16.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.082 4.082 3 C -0.196 4.196 4 C 0.026 3.974 5 H 0.101 0.899 6 O -0.360 6.360 7 C -0.222 4.222 8 C 0.031 3.969 9 H 0.131 0.869 10 N -0.386 5.386 11 C 0.303 3.697 12 O -0.395 6.395 13 C -0.111 4.111 14 C -0.182 4.182 15 C -0.100 4.100 16 C -0.259 4.259 17 C -0.126 4.126 18 C -0.179 4.179 19 C 0.127 3.873 20 C -0.486 4.486 21 H 0.093 0.907 22 C -0.140 4.140 23 N -0.421 5.421 24 Si 0.727 3.273 25 H -0.185 1.185 26 H -0.201 1.201 27 H -0.197 1.197 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.222 0.778 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.232 0.768 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.134 0.866 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.912 0.474 -15.260 15.543 hybrid contribution 0.119 0.459 -0.396 0.618 sum -2.793 0.932 -15.657 15.931 Atomic orbital electron populations 1.21383 0.92326 1.02649 1.01571 1.22380 0.97155 0.94849 0.93810 1.21767 1.00431 0.94964 1.02433 1.23318 0.93281 0.96115 0.84681 0.89942 1.86507 1.46959 1.67906 1.34634 1.24149 1.03190 0.98054 0.96817 1.22128 0.96080 0.94596 0.84142 0.86858 1.46090 1.10319 1.71357 1.10827 1.21272 0.89859 0.75282 0.83244 1.90668 1.15930 1.49488 1.83386 1.20273 0.96882 1.02508 0.91483 1.19055 1.06306 0.92971 0.99832 1.20296 0.98723 0.94323 0.96636 1.20300 1.08320 0.96806 1.00459 1.20671 0.99715 0.94128 0.98078 1.21288 1.01873 0.93883 1.00823 1.17337 0.87598 0.92371 0.90029 1.19502 1.43086 0.90994 0.95009 0.90750 1.25871 0.92317 1.01301 0.94532 1.69829 1.35693 1.36739 0.99888 0.86365 0.78686 0.82304 0.79986 1.18531 1.20053 1.19745 0.92255 0.91911 0.91841 0.92377 0.92301 0.91723 0.77800 0.90950 0.89045 0.76794 0.90678 0.88593 0.89815 0.89710 0.89621 0.86573 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 7.46 37.16 0.28 -0.97 16 2 C -0.08 -0.89 1.35 -153.70 -0.21 -1.09 16 3 C -0.14 -1.47 9.20 37.16 0.34 -1.13 16 4 C 0.09 0.84 4.62 -25.92 -0.12 0.72 16 5 H 0.08 0.72 7.97 -51.93 -0.41 0.31 16 6 O -0.56 -5.14 12.76 -35.23 -0.45 -5.59 16 7 C -0.18 -2.07 7.36 -25.92 -0.19 -2.26 16 8 C 0.14 1.83 3.65 -67.12 -0.25 1.59 16 9 H 0.11 1.76 7.49 -51.93 -0.39 1.37 16 10 N -0.73 -10.82 5.26 -53.02 -0.28 -11.10 16 11 C 0.52 10.08 7.46 -10.98 -0.08 10.00 16 12 O -0.52 -12.49 15.67 5.56 0.09 -12.41 16 13 C -0.07 -1.42 5.18 -29.04 -0.15 -1.57 16 14 C -0.18 -4.37 4.43 -103.91 -0.46 -4.83 16 15 C -0.08 -1.91 9.66 -39.66 -0.38 -2.29 16 16 C -0.24 -5.66 10.05 -39.29 -0.39 -6.05 16 17 C -0.11 -2.66 10.02 -39.66 -0.40 -3.06 16 18 C -0.16 -4.31 8.69 -38.88 -0.34 -4.65 16 19 C 0.13 3.48 5.56 -106.82 -0.59 2.89 16 20 C -0.46 -12.09 8.14 -37.74 -0.31 -12.39 16 21 H 0.07 1.92 6.68 -52.49 -0.35 1.57 16 22 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 23 N -0.80 -20.69 10.97 55.55 0.61 -20.08 16 24 Si 0.90 18.99 29.59 -169.99 -5.03 13.96 16 25 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 26 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 27 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 28 H 0.06 0.58 7.04 -51.93 -0.37 0.22 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.65 7.18 -51.93 -0.37 0.27 16 31 H 0.06 0.58 7.95 -51.93 -0.41 0.16 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.38 1.94 9.12 45.56 0.42 2.35 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.09 1.04 7.65 -51.93 -0.40 0.64 16 37 H 0.40 4.83 6.58 -40.82 -0.27 4.56 16 38 H 0.07 1.25 8.05 -51.93 -0.42 0.83 16 39 H 0.10 1.86 7.06 -51.93 -0.37 1.50 16 40 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 41 H 0.08 1.78 8.06 -52.49 -0.42 1.35 16 42 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 43 H 0.12 3.22 6.22 -52.48 -0.33 2.90 16 44 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 LS Contribution 357.59 15.07 5.39 5.39 Total: -1.00 -31.77 357.59 -8.77 -40.54 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -5.76 Total: 12.52 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: -3.34 Total: -23.24 kcal Atomic # 7 Polarization: -31.51 SS G_CDS: 0.33 Total: -31.18 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.36 Total: -18.00 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.77 -8.77 -40.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779230415.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.127 kcal (2) G-P(sol) polarization free energy of solvation -31.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.76 seconds