Wall clock time and date at job start Tue Mar 31 2020 07:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 112.91004 * 2 1 4 4 C 1.53778 * 113.61716 * 228.74409 * 2 1 3 5 5 H 1.08999 * 113.69239 * 156.32798 * 4 2 1 6 6 O 1.42906 * 113.61195 * 25.43635 * 4 2 1 7 7 C 1.53779 * 87.08241 * 270.88695 * 4 2 1 8 8 C 1.53779 * 87.07914 * 334.56596 * 7 4 2 9 9 H 1.08998 * 113.61622 * 270.79701 * 8 7 4 10 10 N 1.46505 * 113.61112 * 139.98314 * 8 7 4 11 11 C 1.34781 * 120.00081 * 104.50868 * 10 8 7 12 12 O 1.21283 * 119.99787 * 359.97438 * 11 10 8 13 13 C 1.50699 * 120.00265 * 179.97438 * 11 10 8 14 14 C 1.50697 * 109.47353 * 179.97438 * 13 11 10 15 15 C 1.37638 * 120.12671 * 265.02289 * 14 13 11 16 16 C 1.38617 * 120.24649 * 179.97438 * 15 14 13 17 17 C 1.38653 * 120.49947 * 359.97438 * 16 15 14 18 18 C 1.37596 * 120.25120 * 0.02562 * 17 16 15 19 19 C 1.40700 * 120.12652 * 84.99856 * 14 13 11 20 20 C 1.41399 * 120.24276 * 359.97438 * 19 14 13 21 21 H 1.07993 * 120.00505 * 334.05617 * 20 19 14 22 22 C 1.39945 * 119.99475 * 154.05720 * 20 19 14 23 23 N 1.30820 * 120.00362 * 343.67773 * 22 20 19 24 24 Si 1.86800 * 119.99690 * 163.67471 * 22 20 19 25 25 H 1.48497 * 109.47509 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47141 * 119.99987 * 24 22 20 27 27 H 1.48505 * 109.47397 * 240.00275 * 24 22 20 28 28 H 1.08992 * 109.47583 * 288.75025 * 1 2 3 29 29 H 1.09003 * 109.47234 * 48.75286 * 1 2 3 30 30 H 1.08999 * 109.47202 * 168.74705 * 1 2 3 31 31 H 1.08995 * 109.47580 * 191.25266 * 3 2 1 32 32 H 1.09004 * 109.46652 * 311.24948 * 3 2 1 33 33 H 1.09004 * 109.47010 * 71.24532 * 3 2 1 34 34 H 0.96705 * 113.99714 * 182.99962 * 6 4 2 35 35 H 1.09001 * 113.61593 * 220.02139 * 7 4 2 36 36 H 1.08999 * 113.61952 * 89.11577 * 7 4 2 37 37 H 0.96997 * 119.99896 * 284.50178 * 10 8 7 38 38 H 1.08993 * 109.47080 * 59.99174 * 13 11 10 39 39 H 1.09001 * 109.46452 * 299.99882 * 13 11 10 40 40 H 1.07996 * 119.87564 * 359.97367 * 15 14 13 41 41 H 1.07999 * 119.74905 * 180.02562 * 16 15 14 42 42 H 1.08000 * 119.87416 * 180.28370 * 17 16 15 43 43 H 1.08004 * 120.12564 * 179.97438 * 18 17 16 44 44 H 0.97001 * 119.99960 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1460 -0.9291 -1.0592 5 1 3.1591 -0.6510 -1.3499 6 8 1.2919 -1.1645 -2.1805 7 6 2.0929 -2.0425 0.0001 8 6 2.1459 -0.9290 1.0594 9 1 3.1589 -0.6508 1.3501 10 7 1.2702 -1.1703 2.2088 11 6 1.7954 -1.5704 3.3839 12 8 2.9929 -1.7310 3.4896 13 6 0.8947 -1.8181 4.5665 14 6 1.7239 -2.2533 5.7471 15 6 1.8954 -3.5925 6.0147 16 6 2.6580 -3.9956 7.0997 17 6 3.2567 -3.0573 7.9266 18 6 3.0988 -1.7133 7.6781 19 6 2.3262 -1.2923 6.5797 20 6 2.1579 0.0862 6.3138 21 1 1.9525 0.4211 5.3079 22 6 2.2574 1.0167 7.3544 23 7 2.1856 0.6174 8.5981 24 14 2.4929 2.8289 6.9675 25 1 2.5417 3.0186 5.4955 26 1 1.3591 3.6064 7.5289 27 1 3.7647 3.3027 7.5704 28 1 -0.3634 0.3303 0.9730 29 1 -0.3634 0.6776 -0.7727 30 1 -0.3633 -1.0079 -0.2005 31 1 3.1954 1.3517 -0.2005 32 1 1.6428 2.0077 -0.7727 33 1 1.9626 1.8726 0.9731 34 1 1.6549 -1.7842 -2.8282 35 1 2.9716 -2.6874 0.0003 36 1 1.1568 -2.6010 0.0002 37 1 0.3125 -1.0421 2.1242 38 1 0.1769 -2.6000 4.3189 39 1 0.3612 -0.9007 4.8151 40 1 1.4340 -4.3319 5.3770 41 1 2.7876 -5.0486 7.3021 42 1 3.8526 -3.3827 8.7665 43 1 3.5657 -0.9841 8.3237 44 1 2.2549 1.2623 9.3194 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779230415.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:34 Heat of formation + Delta-G solvation = -78.642494 kcal Electronic energy + Delta-G solvation = -25040.761215 eV Core-core repulsion = 21535.968919 eV Total energy + Delta-G solvation = -3504.792296 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 3.91 seconds Orbital eigenvalues (eV) -41.64210 -40.19287 -38.91860 -36.39545 -35.49358 -34.21837 -33.26953 -31.46738 -31.32046 -28.67437 -28.39630 -26.94025 -24.96854 -23.58090 -22.81600 -22.04125 -20.98375 -19.63452 -19.03327 -18.49834 -17.76831 -17.29474 -16.74119 -16.28252 -16.19595 -15.90531 -15.60402 -15.38543 -14.91361 -14.75641 -14.37979 -14.22812 -13.91979 -13.58285 -13.43151 -13.35081 -13.20975 -13.01451 -12.90490 -12.76204 -12.72638 -12.53183 -12.49108 -12.11438 -12.00269 -11.70207 -11.35800 -11.31104 -11.19810 -11.02893 -10.78803 -10.59348 -9.87683 -9.21992 -9.15322 -8.59183 -6.28737 0.99482 1.13811 1.35534 1.48749 1.52056 1.83732 2.19913 2.36737 2.79072 3.26029 3.34958 3.65250 3.77839 3.81340 3.89360 4.15435 4.23744 4.38121 4.43087 4.48602 4.60360 4.61937 4.66598 4.72008 4.77533 4.81230 4.90484 4.94858 5.03418 5.05494 5.09035 5.14216 5.20881 5.36050 5.37464 5.46203 5.55536 5.65667 5.78333 6.04678 6.17621 6.22078 6.42906 6.67827 6.76219 6.93498 7.00190 7.12064 7.46675 8.37595 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.004510 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.460890 B = 6206.598492 C = 7669.617757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.078 4.078 3 C -0.139 4.139 4 C 0.100 3.900 5 H 0.096 0.904 6 O -0.563 6.563 7 C -0.176 4.176 8 C 0.120 3.880 9 H 0.087 0.913 10 N -0.712 5.712 11 C 0.518 3.482 12 O -0.574 6.574 13 C -0.071 4.071 14 C -0.187 4.187 15 C -0.092 4.092 16 C -0.242 4.242 17 C -0.118 4.118 18 C -0.194 4.194 19 C 0.096 3.904 20 C -0.482 4.482 21 H 0.071 0.929 22 C 0.037 3.963 23 N -0.827 5.827 24 Si 0.971 3.029 25 H -0.263 1.263 26 H -0.260 1.260 27 H -0.269 1.269 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.395 0.605 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.411 0.589 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.619 -0.004 -18.128 18.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.079 4.079 3 C -0.196 4.196 4 C 0.041 3.959 5 H 0.114 0.886 6 O -0.370 6.370 7 C -0.215 4.215 8 C 0.014 3.986 9 H 0.106 0.894 10 N -0.365 5.365 11 C 0.306 3.694 12 O -0.452 6.452 13 C -0.111 4.111 14 C -0.189 4.189 15 C -0.110 4.110 16 C -0.261 4.261 17 C -0.136 4.136 18 C -0.213 4.213 19 C 0.094 3.906 20 C -0.512 4.512 21 H 0.089 0.911 22 C -0.178 4.178 23 N -0.453 5.453 24 Si 0.792 3.208 25 H -0.186 1.186 26 H -0.185 1.185 27 H -0.194 1.194 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.245 0.755 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.250 0.750 38 H 0.130 0.870 39 H 0.114 0.886 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.123 0.877 43 H 0.114 0.886 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.166 0.388 -17.489 17.983 hybrid contribution 0.470 0.367 0.232 0.640 sum -3.695 0.756 -17.258 17.665 Atomic orbital electron populations 1.21386 0.91504 1.02991 1.01905 1.22379 0.97742 0.94737 0.92996 1.21771 1.00920 0.94870 1.02043 1.23131 0.93791 0.94441 0.84570 0.88646 1.86460 1.47195 1.68658 1.34719 1.24097 1.03232 0.97828 0.96309 1.22287 0.94931 0.97201 0.84148 0.89449 1.45873 1.11306 1.69404 1.09946 1.21143 0.88928 0.75028 0.84275 1.90649 1.17908 1.52284 1.84371 1.20292 0.96850 1.03686 0.90240 1.19544 1.05677 0.93180 1.00458 1.20733 0.98546 0.94754 0.96953 1.20713 1.07357 0.98124 0.99940 1.20946 1.00038 0.93599 0.99028 1.21299 1.03547 0.94685 1.01804 1.17729 0.88444 0.93485 0.90920 1.19639 1.44767 0.91601 0.95194 0.91136 1.26652 0.91531 1.05466 0.94116 1.69886 1.36225 1.38416 1.00780 0.85332 0.78975 0.76928 0.79546 1.18632 1.18475 1.19443 0.92136 0.91277 0.91582 0.92000 0.90943 0.93209 0.75535 0.91286 0.88644 0.75044 0.87040 0.88562 0.86605 0.86701 0.87704 0.88576 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.17 7.46 71.98 0.54 -1.63 16 2 C -0.08 -1.56 1.35 -51.66 -0.07 -1.63 16 3 C -0.14 -2.74 9.20 71.98 0.66 -2.08 16 4 C 0.10 1.73 4.62 31.12 0.14 1.87 16 5 H 0.10 1.43 7.97 -2.39 -0.02 1.41 16 6 O -0.56 -8.60 12.76 -148.98 -1.90 -10.50 16 7 C -0.18 -3.66 7.36 31.12 0.23 -3.43 16 8 C 0.12 3.12 3.65 45.52 0.17 3.28 16 9 H 0.09 2.77 7.49 -2.39 -0.02 2.75 16 10 N -0.71 -20.35 5.26 -440.03 -2.31 -22.66 16 11 C 0.52 20.15 7.46 87.66 0.65 20.80 16 12 O -0.57 -28.10 15.67 -3.04 -0.05 -28.15 16 13 C -0.07 -2.75 5.18 29.10 0.15 -2.60 16 14 C -0.19 -9.11 4.43 -19.41 -0.09 -9.19 16 15 C -0.09 -4.19 9.66 22.22 0.21 -3.97 16 16 C -0.24 -11.19 10.05 22.46 0.23 -10.96 16 17 C -0.12 -5.90 10.02 22.22 0.22 -5.67 16 18 C -0.19 -10.89 8.69 22.73 0.20 -10.69 16 19 C 0.10 5.36 5.56 -21.29 -0.12 5.24 16 20 C -0.48 -26.37 8.14 23.46 0.19 -26.18 16 21 H 0.07 3.77 6.68 -2.91 -0.02 3.75 16 22 C 0.04 1.89 5.16 85.26 0.44 2.33 16 23 N -0.83 -44.30 10.97 21.83 0.24 -44.06 16 24 Si 0.97 39.57 29.59 68.60 2.03 41.60 16 25 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 26 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 27 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 28 H 0.06 1.06 7.04 -2.39 -0.02 1.04 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.16 7.18 -2.39 -0.02 1.14 16 31 H 0.06 1.16 7.95 -2.39 -0.02 1.14 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.39 2.74 9.12 -74.05 -0.68 2.07 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.10 1.93 7.65 -2.39 -0.02 1.91 16 37 H 0.41 9.27 6.58 -92.71 -0.61 8.66 16 38 H 0.11 3.42 8.05 -2.39 -0.02 3.40 16 39 H 0.10 3.71 7.06 -2.39 -0.02 3.69 16 40 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 41 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 42 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 43 H 0.10 5.64 6.22 -2.91 -0.02 5.62 16 44 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 Total: -1.00 -70.78 357.59 1.50 -69.27 By element: Atomic # 1 Polarization: 39.27 SS G_CDS: -0.26 Total: 39.01 kcal Atomic # 6 Polarization: -48.27 SS G_CDS: 3.76 Total: -44.51 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: -2.07 Total: -66.72 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -1.95 Total: -38.65 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -70.78 1.50 -69.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779230415.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.370 kcal (2) G-P(sol) polarization free energy of solvation -70.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.91 seconds