Wall clock time and date at job start Tue Mar 31 2020 07:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 112.90714 * 2 1 4 4 C 1.53782 * 113.61504 * 228.74618 * 2 1 3 5 5 H 1.09001 * 113.61422 * 156.33482 * 4 2 1 6 6 O 1.42906 * 113.69132 * 25.44458 * 4 2 1 7 7 C 1.53787 * 87.08146 * 270.88779 * 4 2 1 8 8 C 1.53778 * 87.07781 * 334.56654 * 7 4 2 9 9 H 1.09007 * 113.61332 * 140.06627 * 8 7 4 10 10 N 1.46504 * 113.61800 * 270.88171 * 8 7 4 11 11 C 1.34775 * 120.00478 * 255.49921 * 10 8 7 12 12 O 1.21281 * 119.99454 * 0.02562 * 11 10 8 13 13 C 1.50691 * 120.00101 * 179.97438 * 11 10 8 14 14 C 1.50706 * 109.47146 * 180.02562 * 13 11 10 15 15 C 1.37641 * 120.12572 * 265.00153 * 14 13 11 16 16 C 1.38610 * 120.24547 * 179.97438 * 15 14 13 17 17 C 1.38655 * 120.50327 * 0.02562 * 16 15 14 18 18 C 1.37600 * 120.24868 * 359.97438 * 17 16 15 19 19 C 1.40691 * 120.12605 * 84.97574 * 14 13 11 20 20 C 1.41395 * 120.24879 * 0.02562 * 19 14 13 21 21 H 1.07998 * 119.99444 * 329.78361 * 20 19 14 22 22 C 1.39945 * 120.00084 * 149.78086 * 20 19 14 23 23 N 1.30827 * 119.99587 * 162.08161 * 22 20 19 24 24 Si 1.86792 * 120.00257 * 342.08528 * 22 20 19 25 25 H 1.48506 * 109.47301 * 95.38975 * 24 22 20 26 26 H 1.48498 * 109.47179 * 215.38884 * 24 22 20 27 27 H 1.48503 * 109.46994 * 335.38854 * 24 22 20 28 28 H 1.09001 * 109.47367 * 288.74912 * 1 2 3 29 29 H 1.09003 * 109.47223 * 48.74905 * 1 2 3 30 30 H 1.09001 * 109.47282 * 168.74841 * 1 2 3 31 31 H 1.09009 * 109.46820 * 191.24969 * 3 2 1 32 32 H 1.09002 * 109.47059 * 311.24833 * 3 2 1 33 33 H 1.08997 * 109.47474 * 71.24975 * 3 2 1 34 34 H 0.96692 * 113.99637 * 182.95809 * 6 4 2 35 35 H 1.08998 * 113.60834 * 220.02176 * 7 4 2 36 36 H 1.08994 * 113.69421 * 89.12819 * 7 4 2 37 37 H 0.97005 * 119.99727 * 75.49646 * 10 8 7 38 38 H 1.09002 * 109.47610 * 60.00202 * 13 11 10 39 39 H 1.09000 * 109.47233 * 300.00214 * 13 11 10 40 40 H 1.07997 * 119.87631 * 0.25072 * 15 14 13 41 41 H 1.08000 * 119.74624 * 179.97438 * 16 15 14 42 42 H 1.08005 * 119.87749 * 179.97438 * 17 16 15 43 43 H 1.07994 * 120.12881 * 180.02562 * 18 17 16 44 44 H 0.97006 * 119.99932 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1460 -0.9291 -1.0593 5 1 3.1591 -0.6499 -1.3489 6 8 1.2933 -1.1655 -2.1815 7 6 2.0928 -2.0426 0.0001 8 6 2.1459 -0.9291 1.0593 9 1 1.4954 -1.1093 1.9153 10 7 3.5075 -0.5538 1.4487 11 6 4.0064 -0.9612 2.6326 12 8 3.3282 -1.6388 3.3755 13 6 5.4071 -0.5756 3.0328 14 6 5.7190 -1.1534 4.3893 15 6 5.5389 -0.3927 5.5222 16 6 5.8245 -0.9217 6.7711 17 6 6.2945 -2.2203 6.8946 18 6 6.4821 -2.9990 5.7758 19 6 6.1949 -2.4725 4.5026 20 6 6.3838 -3.2633 3.3458 21 1 5.7599 -3.1083 2.4780 22 6 7.3792 -4.2468 3.3254 23 7 7.3398 -5.1988 2.4288 24 14 8.7638 -4.2004 4.5782 25 1 8.4244 -5.0820 5.7241 26 1 10.0207 -4.6740 3.9447 27 1 8.9473 -2.8084 5.0620 28 1 -0.3634 0.3303 0.9731 29 1 -0.3634 0.6776 -0.7726 30 1 -0.3634 -1.0079 -0.2005 31 1 3.1954 1.3516 -0.2005 32 1 1.6428 2.0077 -0.7727 33 1 1.9627 1.8726 0.9731 34 1 1.6576 -1.7847 -2.8286 35 1 2.9716 -2.6875 0.0001 36 1 1.1574 -2.6020 0.0010 37 1 4.0500 -0.0122 0.8544 38 1 5.4876 0.5107 3.0730 39 1 6.1144 -0.9655 2.3008 40 1 5.1695 0.6187 5.4380 41 1 5.6807 -0.3175 7.6547 42 1 6.5142 -2.6222 7.8727 43 1 6.8478 -4.0103 5.8742 44 1 8.0295 -5.8807 2.4149 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779230418.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:57 Heat of formation + Delta-G solvation = -54.975805 kcal Electronic energy + Delta-G solvation = -25094.850360 eV Core-core repulsion = 21591.084329 eV Total energy + Delta-G solvation = -3503.766031 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 9.85 seconds Orbital eigenvalues (eV) -40.64695 -38.76429 -37.40355 -35.47666 -33.56207 -32.89495 -31.76248 -30.43748 -30.27079 -27.58620 -27.01852 -24.96629 -24.01446 -22.64093 -21.38937 -20.56982 -19.43474 -18.52334 -17.50541 -17.32098 -16.33707 -15.89200 -15.57573 -15.17876 -14.74116 -14.55467 -14.25154 -13.76248 -13.68670 -13.52886 -13.37299 -12.88795 -12.67301 -12.48290 -12.24341 -12.11734 -11.94794 -11.88616 -11.85058 -11.39037 -11.21727 -11.13614 -10.80947 -10.77348 -10.69415 -10.23058 -10.21595 -9.72900 -9.68624 -9.53955 -9.19726 -9.09981 -8.66683 -7.56783 -7.47284 -6.91315 -4.45136 2.58630 2.74590 3.14155 3.21555 3.30407 3.34254 3.55481 4.00885 4.03434 4.29551 4.54060 4.56380 4.80273 4.83249 5.07785 5.30123 5.33071 5.54995 5.57623 5.60118 5.72500 5.77557 5.82769 5.88001 5.89353 5.95344 5.99975 6.11461 6.14890 6.21026 6.21631 6.30601 6.31875 6.61158 6.75206 6.86425 6.98226 7.23559 7.45953 7.53691 7.69119 7.77457 7.91849 7.95768 8.17485 8.38730 8.71406 8.85122 8.86150 10.10938 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018097 B = 0.004179 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.856381 B = 6697.879434 C = 7753.773362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.081 4.081 3 C -0.137 4.137 4 C 0.085 3.915 5 H 0.079 0.921 6 O -0.558 6.558 7 C -0.184 4.184 8 C 0.136 3.864 9 H 0.104 0.896 10 N -0.727 5.727 11 C 0.518 3.482 12 O -0.518 6.518 13 C -0.074 4.074 14 C -0.166 4.166 15 C -0.069 4.069 16 C -0.242 4.242 17 C -0.080 4.080 18 C -0.233 4.233 19 C 0.110 3.890 20 C -0.444 4.444 21 H 0.088 0.912 22 C 0.085 3.915 23 N -0.811 5.811 24 Si 0.909 3.091 25 H -0.271 1.271 26 H -0.292 1.292 27 H -0.244 1.244 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.376 0.624 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.395 0.605 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.280 9.738 -7.683 13.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.081 4.081 3 C -0.194 4.194 4 C 0.026 3.974 5 H 0.097 0.903 6 O -0.363 6.363 7 C -0.223 4.223 8 C 0.029 3.971 9 H 0.122 0.878 10 N -0.380 5.380 11 C 0.306 3.694 12 O -0.391 6.391 13 C -0.114 4.114 14 C -0.168 4.168 15 C -0.088 4.088 16 C -0.261 4.261 17 C -0.099 4.099 18 C -0.252 4.252 19 C 0.107 3.893 20 C -0.473 4.473 21 H 0.106 0.894 22 C -0.134 4.134 23 N -0.435 5.435 24 Si 0.736 3.264 25 H -0.198 1.198 26 H -0.220 1.220 27 H -0.167 1.167 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.223 0.777 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.230 0.770 38 H 0.097 0.903 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.068 9.423 -6.952 13.678 hybrid contribution 1.277 -0.484 -0.151 1.374 sum -5.791 8.940 -7.103 12.803 Atomic orbital electron populations 1.21373 0.91797 1.02731 1.01417 1.22379 0.97147 0.94582 0.94042 1.21702 1.00255 0.95152 1.02281 1.23589 0.93034 0.96107 0.84711 0.90284 1.86478 1.47093 1.67990 1.34778 1.24114 1.03602 0.97865 0.96708 1.21623 0.84938 0.94175 0.96349 0.87835 1.45859 1.14709 1.56514 1.20947 1.21134 0.89444 0.78861 0.79960 1.90691 1.60506 1.36308 1.51617 1.20296 0.92837 1.00092 0.98156 1.19061 1.11392 0.94590 0.91737 1.20429 0.98093 0.97541 0.92695 1.20329 1.13142 0.96698 0.95919 1.20601 0.98258 0.94284 0.96740 1.21000 1.12024 0.99222 0.92972 1.17479 0.89011 0.90387 0.92442 1.19399 1.15186 1.12397 1.00283 0.89369 1.26148 0.99239 0.92461 0.95507 1.69710 1.32073 1.09145 1.32619 0.86346 0.78857 0.81246 0.79934 1.19765 1.22011 1.16699 0.92491 0.92051 0.91814 0.92559 0.92238 0.91831 0.77706 0.90379 0.88763 0.77034 0.90317 0.88193 0.89105 0.89023 0.89024 0.88348 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 8.46 37.16 0.31 -0.90 16 2 C -0.08 -0.88 1.34 -153.70 -0.21 -1.09 16 3 C -0.14 -1.29 8.58 37.15 0.32 -0.97 16 4 C 0.08 0.92 4.51 -25.92 -0.12 0.80 16 5 H 0.08 0.79 7.96 -51.93 -0.41 0.38 16 6 O -0.56 -5.77 12.77 -35.23 -0.45 -6.22 16 7 C -0.18 -2.40 7.36 -25.92 -0.19 -2.59 16 8 C 0.14 1.87 3.73 -67.12 -0.25 1.62 16 9 H 0.10 1.65 7.50 -51.93 -0.39 1.26 16 10 N -0.73 -10.54 4.82 -53.02 -0.26 -10.79 16 11 C 0.52 9.96 7.44 -10.99 -0.08 9.88 16 12 O -0.52 -12.42 15.67 5.56 0.09 -12.33 16 13 C -0.07 -1.39 5.19 -29.04 -0.15 -1.54 16 14 C -0.17 -3.82 4.43 -103.91 -0.46 -4.28 16 15 C -0.07 -1.50 9.66 -39.66 -0.38 -1.88 16 16 C -0.24 -5.23 10.05 -39.29 -0.39 -5.63 16 17 C -0.08 -1.83 10.02 -39.66 -0.40 -2.23 16 18 C -0.23 -5.85 7.17 -38.87 -0.28 -6.13 16 19 C 0.11 2.82 5.10 -106.83 -0.54 2.28 16 20 C -0.44 -11.93 8.56 -37.74 -0.32 -12.25 16 21 H 0.09 2.49 7.00 -52.49 -0.37 2.12 16 22 C 0.08 2.22 5.41 -17.34 -0.09 2.13 16 23 N -0.81 -21.64 13.93 55.55 0.77 -20.87 16 24 Si 0.91 20.92 24.52 -169.99 -4.17 16.75 16 25 H -0.27 -6.17 6.71 56.52 0.38 -5.79 16 26 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.24 -5.70 6.86 56.52 0.39 -5.32 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.70 7.19 -51.93 -0.37 0.32 16 31 H 0.06 0.48 6.58 -51.92 -0.34 0.14 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.38 2.50 9.12 45.56 0.42 2.91 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.20 7.66 -51.93 -0.40 0.80 16 37 H 0.39 4.56 7.08 -40.82 -0.29 4.27 16 38 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 39 H 0.10 1.87 7.13 -51.93 -0.37 1.50 16 40 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 43 H 0.10 2.47 4.76 -52.49 -0.25 2.22 16 44 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 LS Contribution 352.60 15.07 5.31 5.31 Total: -1.00 -31.84 352.60 -7.69 -39.53 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -5.75 Total: 11.41 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -3.24 Total: -22.79 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.52 Total: -31.66 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.36 Total: -18.55 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.17 Total: 16.75 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.84 -7.69 -39.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779230418.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.447 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.85 seconds