Wall clock time and date at job start Tue Mar 31 2020 07:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 112.90714 * 2 1 4 4 C 1.53782 * 113.61504 * 228.74618 * 2 1 3 5 5 H 1.09001 * 113.61422 * 156.33482 * 4 2 1 6 6 O 1.42906 * 113.69132 * 25.44458 * 4 2 1 7 7 C 1.53787 * 87.08146 * 270.88779 * 4 2 1 8 8 C 1.53778 * 87.07781 * 334.56654 * 7 4 2 9 9 H 1.09007 * 113.61332 * 140.06627 * 8 7 4 10 10 N 1.46504 * 113.61800 * 270.88171 * 8 7 4 11 11 C 1.34775 * 120.00478 * 255.49921 * 10 8 7 12 12 O 1.21281 * 119.99454 * 0.02562 * 11 10 8 13 13 C 1.50691 * 120.00101 * 179.97438 * 11 10 8 14 14 C 1.50706 * 109.47146 * 180.02562 * 13 11 10 15 15 C 1.37641 * 120.12572 * 265.00153 * 14 13 11 16 16 C 1.38610 * 120.24547 * 179.97438 * 15 14 13 17 17 C 1.38655 * 120.50327 * 0.02562 * 16 15 14 18 18 C 1.37600 * 120.24868 * 359.97438 * 17 16 15 19 19 C 1.40691 * 120.12605 * 84.97574 * 14 13 11 20 20 C 1.41395 * 120.24879 * 0.02562 * 19 14 13 21 21 H 1.07998 * 119.99444 * 329.78361 * 20 19 14 22 22 C 1.39945 * 120.00084 * 149.78086 * 20 19 14 23 23 N 1.30827 * 119.99587 * 162.08161 * 22 20 19 24 24 Si 1.86792 * 120.00257 * 342.08528 * 22 20 19 25 25 H 1.48506 * 109.47301 * 95.38975 * 24 22 20 26 26 H 1.48498 * 109.47179 * 215.38884 * 24 22 20 27 27 H 1.48503 * 109.46994 * 335.38854 * 24 22 20 28 28 H 1.09001 * 109.47367 * 288.74912 * 1 2 3 29 29 H 1.09003 * 109.47223 * 48.74905 * 1 2 3 30 30 H 1.09001 * 109.47282 * 168.74841 * 1 2 3 31 31 H 1.09009 * 109.46820 * 191.24969 * 3 2 1 32 32 H 1.09002 * 109.47059 * 311.24833 * 3 2 1 33 33 H 1.08997 * 109.47474 * 71.24975 * 3 2 1 34 34 H 0.96692 * 113.99637 * 182.95809 * 6 4 2 35 35 H 1.08998 * 113.60834 * 220.02176 * 7 4 2 36 36 H 1.08994 * 113.69421 * 89.12819 * 7 4 2 37 37 H 0.97005 * 119.99727 * 75.49646 * 10 8 7 38 38 H 1.09002 * 109.47610 * 60.00202 * 13 11 10 39 39 H 1.09000 * 109.47233 * 300.00214 * 13 11 10 40 40 H 1.07997 * 119.87631 * 0.25072 * 15 14 13 41 41 H 1.08000 * 119.74624 * 179.97438 * 16 15 14 42 42 H 1.08005 * 119.87749 * 179.97438 * 17 16 15 43 43 H 1.07994 * 120.12881 * 180.02562 * 18 17 16 44 44 H 0.97006 * 119.99932 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1460 -0.9291 -1.0593 5 1 3.1591 -0.6499 -1.3489 6 8 1.2933 -1.1655 -2.1815 7 6 2.0928 -2.0426 0.0001 8 6 2.1459 -0.9291 1.0593 9 1 1.4954 -1.1093 1.9153 10 7 3.5075 -0.5538 1.4487 11 6 4.0064 -0.9612 2.6326 12 8 3.3282 -1.6388 3.3755 13 6 5.4071 -0.5756 3.0328 14 6 5.7190 -1.1534 4.3893 15 6 5.5389 -0.3927 5.5222 16 6 5.8245 -0.9217 6.7711 17 6 6.2945 -2.2203 6.8946 18 6 6.4821 -2.9990 5.7758 19 6 6.1949 -2.4725 4.5026 20 6 6.3838 -3.2633 3.3458 21 1 5.7599 -3.1083 2.4780 22 6 7.3792 -4.2468 3.3254 23 7 7.3398 -5.1988 2.4288 24 14 8.7638 -4.2004 4.5782 25 1 8.4244 -5.0820 5.7241 26 1 10.0207 -4.6740 3.9447 27 1 8.9473 -2.8084 5.0620 28 1 -0.3634 0.3303 0.9731 29 1 -0.3634 0.6776 -0.7726 30 1 -0.3634 -1.0079 -0.2005 31 1 3.1954 1.3516 -0.2005 32 1 1.6428 2.0077 -0.7727 33 1 1.9627 1.8726 0.9731 34 1 1.6576 -1.7847 -2.8286 35 1 2.9716 -2.6875 0.0001 36 1 1.1574 -2.6020 0.0010 37 1 4.0500 -0.0122 0.8544 38 1 5.4876 0.5107 3.0730 39 1 6.1144 -0.9655 2.3008 40 1 5.1695 0.6187 5.4380 41 1 5.6807 -0.3175 7.6547 42 1 6.5142 -2.6222 7.8727 43 1 6.8478 -4.0103 5.8742 44 1 8.0295 -5.8807 2.4149 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779230418.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:53 Heat of formation + Delta-G solvation = -77.458904 kcal Electronic energy + Delta-G solvation = -25095.825301 eV Core-core repulsion = 21591.084329 eV Total energy + Delta-G solvation = -3504.740971 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 8.13 seconds Orbital eigenvalues (eV) -41.76085 -40.28847 -39.06259 -36.42333 -35.47698 -34.23754 -33.36305 -32.15050 -31.39440 -28.79772 -28.25062 -26.76606 -25.17671 -23.67069 -23.19029 -22.12599 -21.01707 -19.61237 -19.22786 -18.45683 -17.69717 -17.52178 -16.94987 -16.41503 -16.18148 -16.02544 -15.61259 -15.37061 -15.15382 -14.80239 -14.54702 -14.46099 -14.04810 -13.83651 -13.70875 -13.33487 -13.13444 -13.02209 -12.98357 -12.85328 -12.68827 -12.64002 -12.49139 -12.06052 -11.98597 -11.82209 -11.52882 -11.36998 -11.15213 -10.96952 -10.80580 -10.65145 -9.96521 -9.38865 -9.27850 -8.85825 -6.43892 0.80449 0.91484 1.27605 1.39935 1.49509 1.79943 2.14199 2.25857 2.65954 3.18644 3.32171 3.54858 3.64112 3.78452 3.93778 4.05936 4.22413 4.30316 4.34842 4.45595 4.46406 4.59464 4.62264 4.68947 4.74824 4.83303 4.86824 4.89909 4.94644 4.98100 5.01707 5.07353 5.12511 5.17787 5.38222 5.38673 5.40927 5.63971 5.68951 5.87829 5.96712 6.06538 6.30452 6.46783 6.64420 6.81818 6.87752 6.92474 7.42686 8.22037 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018097 B = 0.004179 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.856381 B = 6697.879434 C = 7753.773362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.069 4.069 3 C -0.136 4.136 4 C 0.099 3.901 5 H 0.094 0.906 6 O -0.565 6.565 7 C -0.189 4.189 8 C 0.124 3.876 9 H 0.077 0.923 10 N -0.705 5.705 11 C 0.519 3.481 12 O -0.575 6.575 13 C -0.074 4.074 14 C -0.172 4.172 15 C -0.079 4.079 16 C -0.230 4.230 17 C -0.093 4.093 18 C -0.257 4.257 19 C 0.083 3.917 20 C -0.469 4.469 21 H 0.057 0.943 22 C 0.049 3.951 23 N -0.853 5.853 24 Si 0.963 3.037 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.250 1.250 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.393 0.607 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.413 0.587 38 H 0.124 0.876 39 H 0.096 0.904 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.120 0.880 43 H 0.089 0.911 44 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.137 12.656 -7.406 15.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.070 4.070 3 C -0.193 4.193 4 C 0.040 3.960 5 H 0.112 0.888 6 O -0.372 6.372 7 C -0.228 4.228 8 C 0.017 3.983 9 H 0.096 0.904 10 N -0.358 5.358 11 C 0.307 3.693 12 O -0.453 6.453 13 C -0.113 4.113 14 C -0.173 4.173 15 C -0.097 4.097 16 C -0.249 4.249 17 C -0.111 4.111 18 C -0.277 4.277 19 C 0.081 3.919 20 C -0.499 4.499 21 H 0.075 0.925 22 C -0.165 4.165 23 N -0.480 5.480 24 Si 0.787 3.213 25 H -0.196 1.196 26 H -0.204 1.204 27 H -0.173 1.173 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.243 0.757 35 H 0.071 0.929 36 H 0.111 0.889 37 H 0.251 0.749 38 H 0.142 0.858 39 H 0.114 0.886 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.138 0.862 43 H 0.107 0.893 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.917 12.367 -6.735 15.689 hybrid contribution 1.083 -1.270 -0.173 1.677 sum -5.835 11.097 -6.908 14.315 Atomic orbital electron populations 1.21384 0.91409 1.02516 1.01987 1.22300 0.97372 0.95193 0.92091 1.21723 1.01021 0.93792 1.02784 1.23454 0.93815 0.94251 0.84504 0.88795 1.86439 1.47392 1.68568 1.34809 1.24133 1.02431 0.98082 0.98150 1.21726 0.84155 0.96187 0.96199 0.90430 1.45587 1.15155 1.55374 1.19678 1.21190 0.89303 0.78151 0.80648 1.90666 1.61918 1.39037 1.53716 1.20353 0.92304 1.02559 0.96116 1.19557 1.09563 0.93863 0.94339 1.20905 0.97415 0.99159 0.92188 1.20876 1.10233 0.96373 0.97385 1.20977 0.97996 0.94819 0.97276 1.21148 1.13254 0.99472 0.93793 1.17730 0.90201 0.91723 0.92268 1.19315 1.16091 1.14304 1.00153 0.92468 1.26759 1.00737 0.92033 0.96988 1.69744 1.33445 1.10261 1.34548 0.85528 0.77000 0.80683 0.78091 1.19595 1.20447 1.17345 0.92233 0.90869 0.92727 0.91389 0.90868 0.91920 0.75738 0.92860 0.88897 0.74948 0.85833 0.88567 0.85453 0.85417 0.86178 0.89270 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.26 8.46 71.98 0.61 -1.65 16 2 C -0.07 -1.39 1.34 -51.66 -0.07 -1.46 16 3 C -0.14 -2.17 8.58 71.98 0.62 -1.55 16 4 C 0.10 1.99 4.51 31.12 0.14 2.13 16 5 H 0.09 1.65 7.96 -2.39 -0.02 1.63 16 6 O -0.56 -10.53 12.77 -148.98 -1.90 -12.43 16 7 C -0.19 -5.06 7.36 31.12 0.23 -4.83 16 8 C 0.12 3.42 3.73 45.52 0.17 3.59 16 9 H 0.08 2.58 7.50 -2.38 -0.02 2.56 16 10 N -0.70 -20.07 4.82 -440.04 -2.12 -22.19 16 11 C 0.52 20.02 7.44 87.65 0.65 20.68 16 12 O -0.58 -28.47 15.67 -3.03 -0.05 -28.52 16 13 C -0.07 -2.70 5.19 29.10 0.15 -2.55 16 14 C -0.17 -7.74 4.43 -19.40 -0.09 -7.82 16 15 C -0.08 -3.16 9.66 22.22 0.21 -2.95 16 16 C -0.23 -9.15 10.05 22.46 0.23 -8.92 16 17 C -0.09 -4.02 10.02 22.22 0.22 -3.80 16 18 C -0.26 -12.92 7.17 22.73 0.16 -12.76 16 19 C 0.08 4.34 5.10 -21.29 -0.11 4.23 16 20 C -0.47 -26.36 8.56 23.46 0.20 -26.16 16 21 H 0.06 3.45 7.00 -2.91 -0.02 3.43 16 22 C 0.05 2.65 5.41 85.26 0.46 3.11 16 23 N -0.85 -47.54 13.93 21.83 0.30 -47.24 16 24 Si 0.96 43.96 24.52 68.60 1.68 45.64 16 25 H -0.27 -12.08 6.71 99.48 0.67 -11.42 16 26 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 27 H -0.25 -11.50 6.86 99.48 0.68 -10.81 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 1.16 7.19 -2.39 -0.02 1.14 16 31 H 0.07 0.92 6.58 -2.38 -0.02 0.90 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.39 4.44 9.12 -74.06 -0.68 3.77 16 35 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.09 2.47 7.66 -2.39 -0.02 2.45 16 37 H 0.41 8.77 7.08 -92.70 -0.66 8.11 16 38 H 0.12 3.32 8.05 -2.39 -0.02 3.30 16 39 H 0.10 3.61 7.13 -2.39 -0.02 3.59 16 40 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 41 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 42 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 43 H 0.09 4.53 4.76 -2.91 -0.01 4.52 16 44 H 0.29 14.63 8.30 -92.70 -0.77 13.86 16 Total: -1.00 -72.14 352.60 1.34 -70.80 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: -0.37 Total: 34.64 kcal Atomic # 6 Polarization: -44.51 SS G_CDS: 3.79 Total: -40.71 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -1.82 Total: -69.43 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -1.95 Total: -40.95 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.68 Total: 45.64 kcal Total: -72.14 1.34 -70.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779230418.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.655 kcal (2) G-P(sol) polarization free energy of solvation -72.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.13 seconds