Wall clock time and date at job start Tue Mar 31 2020 09:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47135 * 2 1 4 4 O 1.42902 * 110.63826 * 61.85670 * 3 2 1 5 5 C 1.55149 * 110.71762 * 298.52175 * 3 2 1 6 6 C 1.55129 * 101.48514 * 205.96895 * 5 3 2 7 7 N 1.47427 * 104.72087 * 37.29461 * 6 5 3 8 8 C 1.34775 * 125.64894 * 155.81710 * 7 6 5 9 9 O 1.21278 * 120.00248 * 179.69395 * 8 7 6 10 10 C 1.50707 * 119.99826 * 359.69214 * 8 7 6 11 11 C 1.50702 * 109.46876 * 179.97438 * 10 8 7 12 12 C 1.37636 * 120.13298 * 265.00052 * 11 10 8 13 13 C 1.38610 * 120.24856 * 179.97438 * 12 11 10 14 14 C 1.38657 * 120.50115 * 0.02562 * 13 12 11 15 15 C 1.37594 * 120.25136 * 359.97438 * 14 13 12 16 16 C 1.40705 * 120.12024 * 85.26015 * 11 10 8 17 17 C 1.41391 * 120.24871 * 0.02562 * 16 11 10 18 18 H 1.08005 * 119.99677 * 334.27449 * 17 16 11 19 19 C 1.39944 * 120.00108 * 154.27693 * 17 16 11 20 20 N 1.30818 * 119.99816 * 343.65995 * 19 17 16 21 21 Si 1.86800 * 119.99967 * 163.66543 * 19 17 16 22 22 H 1.48491 * 109.47398 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47083 * 119.99778 * 21 19 17 24 24 H 1.48498 * 109.46937 * 239.99532 * 21 19 17 25 25 C 1.47019 * 108.70112 * 335.55644 * 7 6 5 26 26 H 1.09004 * 109.47653 * 300.00243 * 1 2 3 27 27 H 1.09001 * 109.47238 * 59.99636 * 1 2 3 28 28 H 1.09001 * 109.47251 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47050 * 239.99544 * 2 1 3 30 30 H 1.09002 * 109.46888 * 119.99949 * 2 1 3 31 31 H 0.96702 * 114.00348 * 303.14171 * 4 3 2 32 32 H 1.09004 * 111.00806 * 324.20810 * 5 3 2 33 33 H 1.08998 * 111.00552 * 88.02592 * 5 3 2 34 34 H 1.09002 * 110.49575 * 278.45659 * 6 5 3 35 35 H 1.09002 * 110.34746 * 156.05827 * 6 5 3 36 36 H 1.09008 * 109.46793 * 59.99921 * 10 8 7 37 37 H 1.08995 * 109.47048 * 299.99947 * 10 8 7 38 38 H 1.07995 * 119.87268 * 359.97438 * 12 11 10 39 39 H 1.07995 * 119.74859 * 180.02562 * 13 12 11 40 40 H 1.08003 * 119.87397 * 180.02562 * 14 13 12 41 41 H 1.07996 * 120.13118 * 179.97438 * 15 14 13 42 42 H 0.97001 * 119.99886 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.88565 * 120.70523 * 25 7 6 44 44 H 1.09005 * 109.87896 * 241.86700 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.6132 2.1277 1.1792 5 6 1.5697 2.1910 -1.2750 6 6 2.6713 3.2733 -1.4219 7 7 3.9171 2.5973 -1.0164 8 6 5.1614 2.9505 -1.3949 9 8 6.1184 2.3228 -0.9937 10 6 5.3637 4.1255 -2.3167 11 6 6.8358 4.3079 -2.5825 12 6 7.5695 5.1946 -1.8276 13 6 8.9238 5.3638 -2.0696 14 6 9.5547 4.6442 -3.0730 15 6 8.8411 3.7523 -3.8400 16 6 7.4643 3.5762 -3.6069 17 6 6.7195 2.6669 -4.3927 18 1 5.8247 2.2139 -3.9920 19 6 7.1418 2.3539 -5.6897 20 7 8.0162 3.1159 -6.2947 21 14 6.4567 0.8480 -6.5571 22 1 5.4914 0.1586 -5.6638 23 1 5.7666 1.2660 -7.8038 24 1 7.5679 -0.0781 -6.8930 25 6 3.5776 1.4779 -0.1258 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.6544 2.1343 1.3050 32 1 1.5554 1.5238 -2.1369 33 1 0.5923 2.6484 -1.1215 34 1 2.4666 4.1180 -0.7640 35 1 2.7400 3.6060 -2.4577 36 1 4.9647 5.0262 -1.8501 37 1 4.8442 3.9429 -3.2574 38 1 7.0882 5.7606 -1.0439 39 1 9.4918 6.0615 -1.4722 40 1 10.6106 4.7838 -3.2525 41 1 9.3344 3.1931 -4.6212 42 1 8.3087 2.8991 -7.1938 43 1 3.9362 0.5418 -0.5536 44 1 4.0263 1.6355 0.8551 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779336230.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:06 Heat of formation + Delta-G solvation = -73.816737 kcal Electronic energy + Delta-G solvation = -25117.848785 eV Core-core repulsion = 21613.265750 eV Total energy + Delta-G solvation = -3504.583035 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.13860 -38.46357 -37.14588 -35.28659 -33.57832 -33.08556 -31.69119 -30.01827 -29.42072 -28.91340 -26.60207 -24.99513 -23.49493 -23.02739 -20.88723 -20.46144 -19.95562 -18.67194 -17.15030 -16.92996 -16.53377 -16.05515 -15.31724 -15.17560 -14.81340 -14.46445 -14.22202 -14.08290 -13.56298 -13.45934 -13.02606 -12.76706 -12.61662 -12.46776 -12.28098 -12.11394 -11.97511 -11.68525 -11.54909 -11.51605 -11.27314 -11.12896 -10.97913 -10.93998 -10.74511 -10.62375 -10.35280 -10.07050 -9.43277 -9.32017 -9.14104 -9.10058 -8.28558 -7.26210 -7.24067 -6.69857 -4.29851 2.80429 2.98697 3.08811 3.14058 3.30217 3.36981 3.43986 3.91760 3.96367 4.26500 4.46066 4.50747 4.70190 4.84514 5.02287 5.06786 5.27125 5.39340 5.45859 5.57256 5.63394 5.66167 5.71612 5.79810 5.84023 5.90235 5.92800 6.02811 6.06840 6.15831 6.34151 6.47974 6.55998 6.64772 6.85595 7.12956 7.34681 7.42068 7.47279 7.68999 7.92372 7.99910 8.12633 8.18160 8.36466 8.69438 8.87817 8.96383 9.06446 10.24521 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014550 B = 0.004563 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.984130 B = 6134.299837 C = 7552.453125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.144 4.144 3 C 0.120 3.880 4 O -0.548 6.548 5 C -0.157 4.157 6 C 0.106 3.894 7 N -0.630 5.630 8 C 0.532 3.468 9 O -0.519 6.519 10 C -0.064 4.064 11 C -0.181 4.181 12 C -0.081 4.081 13 C -0.239 4.239 14 C -0.107 4.107 15 C -0.159 4.159 16 C 0.129 3.871 17 C -0.456 4.456 18 H 0.074 0.926 19 C 0.077 3.923 20 N -0.796 5.796 21 Si 0.902 3.098 22 H -0.262 1.262 23 H -0.275 1.275 24 H -0.272 1.272 25 C 0.122 3.878 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.374 0.626 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.117 0.883 42 H 0.278 0.722 43 H 0.077 0.923 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.208 -3.170 7.009 17.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.182 4.182 3 C 0.078 3.922 4 O -0.355 6.355 5 C -0.195 4.195 6 C -0.018 4.018 7 N -0.368 5.368 8 C 0.322 3.678 9 O -0.393 6.393 10 C -0.104 4.104 11 C -0.183 4.183 12 C -0.099 4.099 13 C -0.258 4.258 14 C -0.125 4.125 15 C -0.179 4.179 16 C 0.127 3.873 17 C -0.486 4.486 18 H 0.092 0.908 19 C -0.140 4.140 20 N -0.421 5.421 21 Si 0.726 3.274 22 H -0.186 1.186 23 H -0.200 1.200 24 H -0.197 1.197 25 C -0.001 4.001 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.222 0.778 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.135 0.865 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.799 -3.371 7.031 16.728 hybrid contribution -0.922 -0.753 -0.540 1.308 sum -15.721 -4.125 6.491 17.502 Atomic orbital electron populations 1.21800 0.95280 1.02370 1.01848 1.22097 0.96568 0.95935 1.03622 1.22156 0.94188 0.90921 0.84894 1.86608 1.27529 1.78059 1.43258 1.23500 0.98804 0.98588 0.98628 1.22254 0.83404 0.95281 1.00847 1.48631 1.06201 1.32092 1.49905 1.21005 0.80053 0.85930 0.80814 1.90685 1.39304 1.54096 1.55179 1.20239 0.97548 0.94236 0.98338 1.19071 0.92195 1.03216 1.03811 1.20304 0.94090 0.98072 0.97469 1.20304 0.94875 1.06943 1.03704 1.20673 0.97504 0.97846 0.96522 1.21289 0.94165 1.01191 1.01219 1.17340 0.91475 0.89091 0.89430 1.19495 1.09585 1.22177 0.97335 0.90829 1.25867 0.94013 0.96412 0.97705 1.69829 1.25764 1.33777 1.12766 0.86366 0.79785 0.82011 0.79189 1.18576 1.20040 1.19713 1.21719 0.91701 0.91252 0.95419 0.92653 0.92193 0.92143 0.90393 0.90765 0.77839 0.89560 0.89721 0.91396 0.90183 0.90711 0.88653 0.89763 0.89653 0.89581 0.86542 0.91064 0.90444 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 9.45 37.16 0.35 -0.59 16 2 C -0.14 -1.20 5.12 -26.73 -0.14 -1.34 16 3 C 0.12 1.24 0.96 -88.79 -0.08 1.16 16 4 O -0.55 -5.64 13.10 -35.23 -0.46 -6.10 16 5 C -0.16 -1.47 5.20 -24.47 -0.13 -1.60 16 6 C 0.11 1.30 6.70 -2.41 -0.02 1.28 16 7 N -0.63 -10.47 3.32 -170.38 -0.57 -11.04 16 8 C 0.53 11.23 7.50 -10.98 -0.08 11.15 16 9 O -0.52 -13.26 16.36 5.56 0.09 -13.17 16 10 C -0.06 -1.32 4.19 -29.03 -0.12 -1.45 16 11 C -0.18 -4.52 4.43 -103.91 -0.46 -4.98 16 12 C -0.08 -1.94 9.66 -39.66 -0.38 -2.33 16 13 C -0.24 -5.74 10.05 -39.29 -0.39 -6.13 16 14 C -0.11 -2.68 10.02 -39.66 -0.40 -3.07 16 15 C -0.16 -4.36 8.68 -38.87 -0.34 -4.69 16 16 C 0.13 3.53 5.56 -106.82 -0.59 2.94 16 17 C -0.46 -12.24 8.15 -37.74 -0.31 -12.55 16 18 H 0.07 1.94 6.68 -52.48 -0.35 1.59 16 19 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 20 N -0.80 -20.78 10.97 55.55 0.61 -20.17 16 21 Si 0.90 19.06 29.59 -169.99 -5.03 14.03 16 22 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 C 0.12 1.80 6.23 -3.07 -0.02 1.78 16 26 H 0.05 0.27 6.83 -51.93 -0.35 -0.08 16 27 H 0.06 0.34 7.30 -51.93 -0.38 -0.04 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.37 2.29 7.45 45.56 0.34 2.63 16 32 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16 33 H 0.08 0.59 8.11 -51.93 -0.42 0.17 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.94 7.48 -51.93 -0.39 0.56 16 36 H 0.07 1.33 8.05 -51.92 -0.42 0.91 16 37 H 0.10 1.92 6.75 -51.93 -0.35 1.57 16 38 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 40 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 41 H 0.12 3.26 6.22 -52.49 -0.33 2.93 16 42 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 43 H 0.08 1.16 7.79 -51.93 -0.40 0.76 16 44 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 LS Contribution 355.47 15.07 5.36 5.36 Total: -1.00 -32.69 355.47 -9.18 -41.87 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.98 Total: 7.77 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -3.20 Total: -18.54 kcal Atomic # 7 Polarization: -31.25 SS G_CDS: 0.04 Total: -31.21 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.37 Total: -19.28 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.69 -9.18 -41.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779336230.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.944 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds