Wall clock time and date at job start Tue Mar 31 2020 10:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47348 * 2 1 4 4 C 1.50694 * 120.00513 * 273.70731 * 3 2 1 5 5 C 1.33001 * 119.99831 * 93.70021 * 3 2 1 6 6 C 1.50704 * 119.99715 * 352.32486 * 5 3 2 7 7 C 1.47098 * 120.00208 * 172.32834 * 5 3 2 8 8 O 1.21617 * 119.99957 * 353.88420 * 7 5 3 9 9 N 1.34769 * 119.99986 * 173.89138 * 7 5 3 10 10 C 1.46499 * 119.99978 * 179.97438 * 9 7 5 11 11 C 1.50697 * 109.47324 * 179.97438 * 10 9 7 12 12 C 1.38301 * 119.93576 * 269.72682 * 11 10 9 13 13 C 1.38102 * 120.07171 * 179.72207 * 12 11 10 14 14 C 1.38883 * 119.92811 * 0.57460 * 13 12 11 15 15 O 1.35746 * 120.06772 * 179.68246 * 14 13 12 16 16 C 1.34830 * 117.00199 * 185.82394 * 15 14 13 17 17 H 1.07999 * 119.99556 * 5.35547 * 16 15 14 18 18 C 1.38650 * 120.00342 * 185.35949 * 16 15 14 19 19 N 1.31553 * 120.00079 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99831 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.46966 * 90.00483 * 20 18 16 22 22 H 1.48500 * 109.46981 * 210.00268 * 20 18 16 23 23 H 1.48505 * 109.47306 * 330.00241 * 20 18 16 24 24 C 1.38881 * 119.86051 * 359.70234 * 14 13 12 25 25 C 1.38092 * 119.93148 * 0.02562 * 24 14 13 26 26 H 1.09003 * 109.47004 * 299.99443 * 1 2 3 27 27 H 1.09000 * 109.47185 * 59.99445 * 1 2 3 28 28 H 1.08997 * 109.47494 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47004 * 240.00557 * 2 1 3 30 30 H 1.09000 * 109.47185 * 120.00555 * 2 1 3 31 31 H 1.09004 * 109.47069 * 265.41776 * 4 3 2 32 32 H 1.09007 * 109.47196 * 25.41221 * 4 3 2 33 33 H 1.08998 * 109.47769 * 145.41783 * 4 3 2 34 34 H 1.08996 * 109.46898 * 213.89166 * 6 5 3 35 35 H 1.09003 * 109.47227 * 333.89754 * 6 5 3 36 36 H 1.09007 * 109.46743 * 93.89279 * 6 5 3 37 37 H 0.96996 * 120.00581 * 359.97438 * 9 7 5 38 38 H 1.08999 * 109.47016 * 59.99884 * 10 9 7 39 39 H 1.08999 * 109.47378 * 300.00052 * 10 9 7 40 40 H 1.07999 * 119.95939 * 359.97438 * 12 11 10 41 41 H 1.07998 * 120.03601 * 180.27330 * 13 12 11 42 42 H 0.97001 * 119.99994 * 179.97438 * 19 18 16 43 43 H 1.07997 * 120.02960 * 179.97438 * 24 14 13 44 44 H 1.07999 * 119.96551 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2040 2.1594 -1.3022 5 6 2.3241 2.0229 1.1494 6 6 1.9913 1.3520 2.4572 7 6 2.9716 3.3438 1.1442 8 8 3.3408 3.8358 0.0952 9 7 3.1557 4.0085 2.3020 10 6 3.8010 5.3237 2.2969 11 6 3.8845 5.8478 3.7074 12 6 2.8556 6.6169 4.2199 13 6 2.9266 7.0938 5.5140 14 6 4.0382 6.8104 6.2969 15 8 4.1138 7.2831 7.5672 16 6 5.2692 7.0746 8.2302 17 1 6.1112 6.6296 7.7209 18 6 5.3763 7.4314 9.5657 19 7 6.5034 7.2274 10.2127 20 14 3.9200 8.2017 10.4463 21 1 3.0882 7.1330 11.0555 22 1 4.4110 9.1139 11.5103 23 1 3.1032 8.9706 9.4732 24 6 5.0723 6.0426 5.7774 25 6 4.9928 5.5639 4.4845 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.2354 2.0628 -1.6415 32 1 1.5342 1.7363 -2.0510 33 1 1.9667 3.2132 -1.1564 34 1 1.7214 2.1077 3.1948 35 1 1.1537 0.6696 2.3127 36 1 2.8583 0.7933 2.8099 37 1 2.8609 3.6162 3.1388 38 1 3.2163 6.0129 1.6877 39 1 4.8050 5.2342 1.8822 40 1 1.9939 6.8413 3.6088 41 1 2.1209 7.6906 5.9151 42 1 6.5785 7.4774 11.1469 43 1 5.9381 5.8209 6.3837 44 1 5.7964 4.9665 4.0801 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780927762.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:56 Heat of formation + Delta-G solvation = -39.063920 kcal Electronic energy + Delta-G solvation = -23612.352363 eV Core-core repulsion = 20109.276324 eV Total energy + Delta-G solvation = -3503.076040 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.10076 -39.25962 -37.30056 -36.63559 -34.55842 -32.51389 -31.93695 -30.46716 -30.32751 -29.56205 -26.23537 -25.17181 -24.82531 -23.82034 -22.18610 -21.01205 -20.58746 -18.63966 -17.98496 -17.34806 -16.40557 -16.13007 -15.49312 -15.05136 -14.84602 -14.61562 -14.43230 -14.11087 -13.92030 -13.70776 -13.47598 -13.30280 -13.12209 -12.82237 -12.79094 -12.68599 -12.46117 -12.28332 -12.20476 -11.91204 -11.71041 -11.62500 -11.46427 -11.15068 -10.95702 -10.82911 -10.78377 -10.22362 -9.56754 -9.51295 -9.11417 -8.95526 -8.75089 -8.38430 -7.48514 -6.50761 -4.17604 1.24497 1.95777 2.02059 3.15786 3.19812 3.25062 3.34027 3.43497 4.15932 4.37089 4.52454 4.57726 4.75767 4.80164 4.85609 4.97197 5.00013 5.10484 5.23094 5.28581 5.35314 5.40428 5.47343 5.53433 5.55989 5.66236 5.68041 5.72852 5.74999 5.84308 5.88751 6.01117 6.03250 6.24627 6.37263 6.44796 6.47482 6.56318 6.67461 6.90269 7.12562 7.18525 7.49118 7.64186 7.70047 7.93499 8.30113 8.83853 9.44679 10.56465 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.027059 B = 0.002449 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.524897 B =11428.955988 C =11753.446845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.040 4.040 4 C -0.120 4.120 5 C -0.197 4.197 6 C -0.117 4.117 7 C 0.548 3.452 8 O -0.546 6.546 9 N -0.719 5.719 10 C 0.178 3.822 11 C -0.206 4.206 12 C -0.057 4.057 13 C -0.195 4.195 14 C 0.166 3.834 15 O -0.213 6.213 16 C -0.391 4.391 17 H 0.107 0.893 18 C 0.064 3.936 19 N -0.875 5.875 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.259 1.259 24 C -0.223 4.223 25 C -0.053 4.053 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.401 0.599 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.114 0.886 41 H 0.118 0.882 42 H 0.281 0.719 43 H 0.135 0.865 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.496 -12.167 -16.963 23.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.134 4.134 3 C -0.042 4.042 4 C -0.176 4.176 5 C -0.200 4.200 6 C -0.174 4.174 7 C 0.337 3.663 8 O -0.427 6.427 9 N -0.371 5.371 10 C 0.055 3.945 11 C -0.207 4.207 12 C -0.075 4.075 13 C -0.214 4.214 14 C 0.113 3.887 15 O -0.117 6.117 16 C -0.466 4.466 17 H 0.125 0.875 18 C -0.140 4.140 19 N -0.512 5.512 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.183 1.183 24 C -0.243 4.243 25 C -0.072 4.072 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.237 0.763 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.091 0.909 43 H 0.152 0.848 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.247 -11.632 -17.311 23.237 hybrid contribution -0.386 0.100 1.068 1.140 sum -10.632 -11.532 -16.243 22.580 Atomic orbital electron populations 1.21720 0.94370 1.01933 1.02468 1.20758 0.96564 0.92841 1.03259 1.22331 0.92233 0.94742 0.94916 1.21086 1.01978 1.01342 0.93178 1.21240 1.06570 0.96100 0.96086 1.20824 1.01993 1.00562 0.94025 1.18376 0.79270 0.84984 0.83661 1.90740 1.51488 1.69581 1.30858 1.46271 1.61264 1.20204 1.09360 1.19978 0.97606 0.82941 0.93927 1.19297 0.97808 1.07576 0.96023 1.20536 0.97060 0.95877 0.94070 1.20206 0.98965 1.07858 0.94389 1.19196 0.93310 0.91058 0.85154 1.83588 1.38291 1.68232 1.21596 1.20779 0.88288 1.43220 0.94360 0.87545 1.24492 0.97830 0.96402 0.95248 1.69642 1.25031 1.45329 1.11233 0.86173 0.81768 0.79665 0.79265 1.19834 1.20665 1.18297 1.21285 1.01662 1.04452 0.96861 1.20704 0.96262 0.96975 0.93210 0.92261 0.92382 0.92209 0.90572 0.90491 0.90600 0.92945 0.89343 0.91499 0.90997 0.91212 0.76323 0.91519 0.91492 0.86792 0.86362 0.90903 0.84785 0.87116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.73 37.16 0.36 -0.53 16 2 C -0.10 -0.67 5.35 -27.89 -0.15 -0.82 16 3 C -0.04 -0.39 5.35 -101.17 -0.54 -0.93 16 4 C -0.12 -1.22 8.49 36.00 0.31 -0.92 16 5 C -0.20 -2.09 5.99 -102.84 -0.62 -2.70 16 6 C -0.12 -0.97 8.74 36.01 0.31 -0.65 16 7 C 0.55 7.30 7.59 -12.67 -0.10 7.21 16 8 O -0.55 -8.71 13.30 5.26 0.07 -8.64 16 9 N -0.72 -9.08 5.50 -62.68 -0.34 -9.42 16 10 C 0.18 2.45 5.80 -5.20 -0.03 2.42 16 11 C -0.21 -3.19 5.25 -104.58 -0.55 -3.73 16 12 C -0.06 -0.90 9.69 -39.61 -0.38 -1.28 16 13 C -0.19 -3.64 9.99 -39.39 -0.39 -4.03 16 14 C 0.17 3.64 6.65 -39.10 -0.26 3.39 16 15 O -0.21 -5.41 8.59 0.06 0.00 -5.41 16 16 C -0.39 -10.69 9.90 30.88 0.31 -10.38 16 17 H 0.11 2.97 5.53 -52.49 -0.29 2.68 16 18 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 19 N -0.88 -24.69 13.96 55.48 0.77 -23.91 16 20 Si 0.91 21.08 28.62 -169.99 -4.86 16.21 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 24 C -0.22 -4.57 9.13 -39.40 -0.36 -4.93 16 25 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 26 H 0.06 0.38 7.20 -51.93 -0.37 0.00 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.49 6.68 -51.93 -0.35 0.15 16 31 H 0.08 0.83 8.06 -51.93 -0.42 0.41 16 32 H 0.05 0.42 8.10 -51.93 -0.42 0.00 16 33 H 0.09 1.09 6.10 -51.93 -0.32 0.78 16 34 H 0.07 0.54 6.68 -51.93 -0.35 0.19 16 35 H 0.07 0.49 5.61 -51.93 -0.29 0.20 16 36 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 37 H 0.40 4.57 6.56 -40.82 -0.27 4.30 16 38 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 39 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 40 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 42 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.13 2.91 5.72 -52.49 -0.30 2.61 16 44 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 361.57 15.07 5.45 5.45 Total: -1.00 -29.59 361.57 -7.79 -37.38 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -6.31 Total: 5.87 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -2.57 Total: -17.52 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.43 Total: -33.34 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.07 Total: -14.06 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.86 Total: 16.21 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.59 -7.79 -37.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780927762.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.681 kcal (2) G-P(sol) polarization free energy of solvation -29.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds