Wall clock time and date at job start Tue Mar 31 2020 10:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47348 * 2 1 4 4 C 1.50694 * 120.00513 * 273.70731 * 3 2 1 5 5 C 1.33001 * 119.99831 * 93.70021 * 3 2 1 6 6 C 1.50704 * 119.99715 * 352.32486 * 5 3 2 7 7 C 1.47098 * 120.00208 * 172.32834 * 5 3 2 8 8 O 1.21617 * 119.99957 * 353.88420 * 7 5 3 9 9 N 1.34769 * 119.99986 * 173.89138 * 7 5 3 10 10 C 1.46499 * 119.99978 * 179.97438 * 9 7 5 11 11 C 1.50697 * 109.47324 * 179.97438 * 10 9 7 12 12 C 1.38301 * 119.93576 * 269.72682 * 11 10 9 13 13 C 1.38102 * 120.07171 * 179.72207 * 12 11 10 14 14 C 1.38883 * 119.92811 * 0.57460 * 13 12 11 15 15 O 1.35746 * 120.06772 * 179.68246 * 14 13 12 16 16 C 1.34830 * 117.00199 * 185.82394 * 15 14 13 17 17 H 1.07999 * 119.99556 * 5.35547 * 16 15 14 18 18 C 1.38650 * 120.00342 * 185.35949 * 16 15 14 19 19 N 1.31553 * 120.00079 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99831 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.46966 * 90.00483 * 20 18 16 22 22 H 1.48500 * 109.46981 * 210.00268 * 20 18 16 23 23 H 1.48505 * 109.47306 * 330.00241 * 20 18 16 24 24 C 1.38881 * 119.86051 * 359.70234 * 14 13 12 25 25 C 1.38092 * 119.93148 * 0.02562 * 24 14 13 26 26 H 1.09003 * 109.47004 * 299.99443 * 1 2 3 27 27 H 1.09000 * 109.47185 * 59.99445 * 1 2 3 28 28 H 1.08997 * 109.47494 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47004 * 240.00557 * 2 1 3 30 30 H 1.09000 * 109.47185 * 120.00555 * 2 1 3 31 31 H 1.09004 * 109.47069 * 265.41776 * 4 3 2 32 32 H 1.09007 * 109.47196 * 25.41221 * 4 3 2 33 33 H 1.08998 * 109.47769 * 145.41783 * 4 3 2 34 34 H 1.08996 * 109.46898 * 213.89166 * 6 5 3 35 35 H 1.09003 * 109.47227 * 333.89754 * 6 5 3 36 36 H 1.09007 * 109.46743 * 93.89279 * 6 5 3 37 37 H 0.96996 * 120.00581 * 359.97438 * 9 7 5 38 38 H 1.08999 * 109.47016 * 59.99884 * 10 9 7 39 39 H 1.08999 * 109.47378 * 300.00052 * 10 9 7 40 40 H 1.07999 * 119.95939 * 359.97438 * 12 11 10 41 41 H 1.07998 * 120.03601 * 180.27330 * 13 12 11 42 42 H 0.97001 * 119.99994 * 179.97438 * 19 18 16 43 43 H 1.07997 * 120.02960 * 179.97438 * 24 14 13 44 44 H 1.07999 * 119.96551 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2040 2.1594 -1.3022 5 6 2.3241 2.0229 1.1494 6 6 1.9913 1.3520 2.4572 7 6 2.9716 3.3438 1.1442 8 8 3.3408 3.8358 0.0952 9 7 3.1557 4.0085 2.3020 10 6 3.8010 5.3237 2.2969 11 6 3.8845 5.8478 3.7074 12 6 2.8556 6.6169 4.2199 13 6 2.9266 7.0938 5.5140 14 6 4.0382 6.8104 6.2969 15 8 4.1138 7.2831 7.5672 16 6 5.2692 7.0746 8.2302 17 1 6.1112 6.6296 7.7209 18 6 5.3763 7.4314 9.5657 19 7 6.5034 7.2274 10.2127 20 14 3.9200 8.2017 10.4463 21 1 3.0882 7.1330 11.0555 22 1 4.4110 9.1139 11.5103 23 1 3.1032 8.9706 9.4732 24 6 5.0723 6.0426 5.7774 25 6 4.9928 5.5639 4.4845 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.2354 2.0628 -1.6415 32 1 1.5342 1.7363 -2.0510 33 1 1.9667 3.2132 -1.1564 34 1 1.7214 2.1077 3.1948 35 1 1.1537 0.6696 2.3127 36 1 2.8583 0.7933 2.8099 37 1 2.8609 3.6162 3.1388 38 1 3.2163 6.0129 1.6877 39 1 4.8050 5.2342 1.8822 40 1 1.9939 6.8413 3.6088 41 1 2.1209 7.6906 5.9151 42 1 6.5785 7.4774 11.1469 43 1 5.9381 5.8209 6.3837 44 1 5.7964 4.9665 4.0801 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780927762.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:55 Heat of formation + Delta-G solvation = -55.733872 kcal Electronic energy + Delta-G solvation = -23613.075227 eV Core-core repulsion = 20109.276324 eV Total energy + Delta-G solvation = -3503.798903 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.21577 -40.77361 -38.73159 -37.56628 -35.75314 -34.46530 -32.74118 -31.88691 -31.42108 -30.56601 -27.82952 -26.40485 -25.78670 -24.64264 -23.72813 -22.22878 -21.77399 -19.90394 -19.55343 -19.07054 -17.32491 -17.10620 -16.80061 -16.41475 -16.05569 -15.79224 -15.72383 -15.50616 -15.26872 -14.96902 -14.63063 -14.34009 -14.32121 -14.10035 -14.03282 -13.79948 -13.45639 -13.30195 -13.09817 -13.07819 -12.79852 -12.58684 -12.46597 -12.44998 -12.32186 -12.21353 -11.94006 -11.68436 -11.34017 -10.93980 -10.56241 -10.12018 -9.85900 -9.59652 -9.11126 -8.51737 -6.24806 0.41759 0.47330 0.52497 1.32157 1.35436 1.52112 2.27003 2.27936 2.34089 2.79295 3.06506 3.11326 3.74144 3.84968 3.91025 3.99097 4.09687 4.12327 4.25679 4.41387 4.46155 4.52422 4.57512 4.68781 4.74790 4.77208 4.79554 4.81230 4.90445 4.93534 5.02152 5.11500 5.16333 5.20039 5.22646 5.32434 5.40456 5.48097 5.52181 5.63884 5.68907 5.74291 5.76608 5.86487 6.17283 6.63386 6.82309 7.28480 7.54943 8.59613 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.027059 B = 0.002449 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.524897 B =11428.955988 C =11753.446845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.033 4.033 4 C -0.119 4.119 5 C -0.213 4.213 6 C -0.114 4.114 7 C 0.543 3.457 8 O -0.577 6.577 9 N -0.715 5.715 10 C 0.183 3.817 11 C -0.174 4.174 12 C -0.046 4.046 13 C -0.190 4.190 14 C 0.129 3.871 15 O -0.241 6.241 16 C -0.400 4.400 17 H 0.081 0.919 18 C 0.010 3.990 19 N -0.921 5.921 20 Si 0.971 3.029 21 H -0.265 1.265 22 H -0.269 1.269 23 H -0.261 1.261 24 C -0.237 4.237 25 C -0.051 4.051 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.409 0.591 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.153 0.847 41 H 0.132 0.868 42 H 0.285 0.715 43 H 0.110 0.890 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.095 -13.407 -18.929 26.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.132 4.132 3 C -0.035 4.035 4 C -0.175 4.175 5 C -0.216 4.216 6 C -0.170 4.170 7 C 0.334 3.666 8 O -0.460 6.460 9 N -0.367 5.367 10 C 0.060 3.940 11 C -0.175 4.175 12 C -0.064 4.064 13 C -0.209 4.209 14 C 0.080 3.920 15 O -0.148 6.148 16 C -0.476 4.476 17 H 0.099 0.901 18 C -0.188 4.188 19 N -0.562 5.562 20 Si 0.793 3.207 21 H -0.190 1.190 22 H -0.193 1.193 23 H -0.185 1.185 24 C -0.256 4.256 25 C -0.070 4.070 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.246 0.754 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.170 0.830 41 H 0.150 0.850 42 H 0.095 0.905 43 H 0.128 0.872 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.864 -12.895 -19.310 26.545 hybrid contribution 0.375 0.355 1.237 1.340 sum -12.488 -12.540 -18.073 25.295 Atomic orbital electron populations 1.21717 0.93468 1.02881 1.02262 1.20823 0.97184 0.90913 1.04282 1.22625 0.90816 0.95889 0.94174 1.21032 1.01853 1.00278 0.94360 1.21287 1.07580 0.95150 0.97614 1.20842 1.02768 1.00730 0.92694 1.18839 0.78884 0.85773 0.83092 1.90735 1.52906 1.70505 1.31869 1.46127 1.61086 1.19685 1.09774 1.19886 0.98079 0.83780 0.92260 1.19550 0.96456 1.05196 0.96340 1.20938 0.98056 0.94313 0.93100 1.20509 0.98038 1.07435 0.94965 1.19740 0.95167 0.92474 0.84668 1.83531 1.37300 1.70719 1.23241 1.20689 0.88767 1.43286 0.94830 0.90111 1.25299 1.00506 0.97123 0.95915 1.69727 1.26924 1.47662 1.11848 0.85213 0.78410 0.78996 0.78090 1.19014 1.19337 1.18532 1.21263 1.00859 1.05288 0.98190 1.20906 0.97544 0.96662 0.91852 0.92535 0.92569 0.90708 0.89503 0.89587 0.91585 0.90801 0.91626 0.91403 0.89413 0.90798 0.75437 0.90657 0.91590 0.82950 0.84991 0.90517 0.87244 0.85007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.73 71.98 0.70 -0.61 16 2 C -0.09 -1.02 5.35 29.85 0.16 -0.86 16 3 C -0.03 -0.56 5.35 -17.62 -0.09 -0.66 16 4 C -0.12 -2.26 8.49 71.23 0.60 -1.66 16 5 C -0.21 -4.06 5.99 -18.70 -0.11 -4.17 16 6 C -0.11 -1.56 8.74 71.24 0.62 -0.94 16 7 C 0.54 13.48 7.59 86.57 0.66 14.14 16 8 O -0.58 -17.77 13.30 -4.09 -0.05 -17.82 16 9 N -0.71 -16.18 5.50 -470.47 -2.59 -18.77 16 10 C 0.18 4.49 5.80 85.63 0.50 4.98 16 11 C -0.17 -4.90 5.25 -19.83 -0.10 -5.00 16 12 C -0.05 -1.29 9.69 22.25 0.22 -1.07 16 13 C -0.19 -6.76 9.99 22.39 0.22 -6.54 16 14 C 0.13 5.75 6.65 22.58 0.15 5.90 16 15 O -0.24 -12.65 8.59 -22.70 -0.19 -12.85 16 16 C -0.40 -23.00 9.90 67.92 0.67 -22.32 16 17 H 0.08 4.88 5.53 -2.91 -0.02 4.87 16 18 C 0.01 0.59 5.49 84.83 0.47 1.05 16 19 N -0.92 -54.23 13.96 21.61 0.30 -53.93 16 20 Si 0.97 44.39 28.62 68.60 1.96 46.35 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 23 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 24 C -0.24 -9.91 9.13 22.39 0.20 -9.71 16 25 C -0.05 -1.67 9.69 22.25 0.22 -1.46 16 26 H 0.06 0.55 7.20 -2.39 -0.02 0.53 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.81 6.68 -2.39 -0.02 0.79 16 31 H 0.07 1.38 8.06 -2.38 -0.02 1.36 16 32 H 0.07 1.04 8.10 -2.38 -0.02 1.02 16 33 H 0.07 1.57 6.10 -2.39 -0.01 1.56 16 34 H 0.07 0.90 6.68 -2.39 -0.02 0.89 16 35 H 0.09 0.92 5.61 -2.39 -0.01 0.90 16 36 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.41 8.13 6.56 -92.71 -0.61 7.52 16 38 H 0.08 1.80 8.08 -2.39 -0.02 1.78 16 39 H 0.07 1.70 8.08 -2.39 -0.02 1.68 16 40 H 0.15 3.26 8.06 -2.91 -0.02 3.23 16 41 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 42 H 0.29 15.39 8.31 -92.71 -0.77 14.61 16 43 H 0.11 5.10 5.72 -2.91 -0.02 5.09 16 44 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -67.25 361.57 4.91 -62.34 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.41 Total: 23.60 kcal Atomic # 6 Polarization: -34.01 SS G_CDS: 5.08 Total: -28.93 kcal Atomic # 7 Polarization: -70.41 SS G_CDS: -2.29 Total: -72.69 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.25 Total: -30.67 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.96 Total: 46.35 kcal Total: -67.25 4.91 -62.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780927762.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.606 kcal (2) G-P(sol) polarization free energy of solvation -67.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds