Wall clock time and date at job start Tue Mar 31 2020 10:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.53001 * 109.46875 * 240.00134 * 2 1 3 5 5 C 1.50698 * 109.47533 * 59.99994 * 4 2 1 6 6 H 1.08000 * 119.99473 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00409 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99998 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99842 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46829 * 90.00075 * 9 7 5 11 11 H 1.48504 * 109.47081 * 209.99746 * 9 7 5 12 12 H 1.48499 * 109.46960 * 329.99873 * 9 7 5 13 13 C 1.52997 * 109.47189 * 120.00109 * 2 1 3 14 14 N 1.46497 * 109.47244 * 299.99812 * 13 2 1 15 15 C 1.34775 * 120.00227 * 179.97438 * 14 13 2 16 16 O 1.21587 * 119.99887 * 0.02562 * 15 14 13 17 17 C 1.47601 * 120.00140 * 179.97438 * 15 14 13 18 18 C 1.39751 * 120.26926 * 0.02562 * 17 15 14 19 19 C 1.37463 * 120.20783 * 180.22241 * 18 17 15 20 20 C 1.39600 * 120.42922 * 359.97438 * 19 18 17 21 21 C 1.39276 * 119.08573 * 359.60079 * 20 19 18 22 22 C 1.37238 * 120.92526 * 0.61084 * 21 20 19 23 23 C 1.51677 * 106.93983 * 180.59031 * 21 20 19 24 24 C 1.54704 * 101.91226 * 15.73608 * 23 21 20 25 25 O 1.35991 * 129.71152 * 179.57991 * 20 19 18 26 26 H 1.09004 * 109.46835 * 300.00156 * 1 2 3 27 27 H 1.09003 * 109.47142 * 59.99546 * 1 2 3 28 28 H 1.08995 * 109.47325 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47630 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47345 * 300.00329 * 3 2 1 31 31 H 1.09003 * 109.46942 * 59.99657 * 3 2 1 32 32 H 1.09002 * 109.47023 * 180.02562 * 4 2 1 33 33 H 1.08996 * 109.47380 * 299.99972 * 4 2 1 34 34 H 0.97004 * 119.99848 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47292 * 179.97438 * 13 2 1 36 36 H 1.09004 * 109.47247 * 60.00238 * 13 2 1 37 37 H 0.96997 * 119.99826 * 0.02562 * 14 13 2 38 38 H 1.08000 * 119.89693 * 0.19169 * 18 17 15 39 39 H 1.08000 * 119.78974 * 179.97438 * 19 18 17 40 40 H 1.07995 * 120.04357 * 179.57041 * 22 21 20 41 41 H 1.09002 * 110.94940 * 257.56903 * 23 21 20 42 42 H 1.09001 * 110.94488 * 133.89904 * 23 21 20 43 43 H 1.08995 * 110.74237 * 92.89801 * 24 23 21 44 44 H 1.09005 * 110.74064 * 216.04562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0109 -2.4798 6 1 0.9171 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 1.4331 0.1387 -4.8058 9 14 2.9462 -1.9996 -3.9034 10 1 2.0884 -3.2110 -3.9489 11 1 3.7380 -1.9064 -5.1563 12 1 3.8666 -2.0880 -2.7414 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8769 -0.4914 3.6695 16 8 2.5759 -1.4800 3.7810 17 6 1.3854 0.2047 4.8746 18 6 0.5821 1.3417 4.7530 19 6 0.1288 1.9917 5.8762 20 6 0.4648 1.5238 7.1479 21 6 1.2583 0.3850 7.2624 22 6 1.7193 -0.2685 6.1472 23 6 1.4376 0.1186 8.7448 24 6 0.3233 0.9951 9.3639 25 8 0.1323 2.0167 8.3709 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1299 -0.7216 -1.2491 33 1 1.6766 -1.7489 -1.2493 34 1 1.6680 -0.1923 -5.6868 35 1 3.1300 -0.7217 1.2490 36 1 1.6767 -1.7490 1.2492 37 1 0.9938 0.7578 2.3564 38 1 0.3170 1.7113 3.7734 39 1 -0.4913 2.8701 5.7744 40 1 2.3395 -1.1464 6.2526 41 1 2.4218 0.4431 9.0829 42 1 1.2769 -0.9350 8.9736 43 1 -0.5900 0.4168 9.5035 44 1 0.6526 1.4279 10.3086 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805280254.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:22 Heat of formation + Delta-G solvation = -55.810298 kcal Electronic energy + Delta-G solvation = -24150.695982 eV Core-core repulsion = 20646.893764 eV Total energy + Delta-G solvation = -3503.802217 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.49635 -39.82427 -37.63972 -36.88785 -33.82024 -33.04868 -32.12368 -30.61419 -29.62525 -27.83388 -26.57238 -26.42945 -24.08446 -23.40813 -22.20878 -22.16357 -20.27515 -18.57188 -17.79354 -17.48577 -16.94912 -16.67362 -16.38140 -15.68229 -15.15662 -14.58839 -14.39481 -14.00579 -13.84357 -13.79591 -13.64514 -13.40475 -13.31343 -12.93514 -12.73312 -12.69684 -12.32310 -12.26803 -12.17256 -11.28915 -11.22189 -11.15446 -11.09372 -11.01392 -10.62567 -10.49893 -10.01812 -9.98163 -9.74887 -9.47836 -9.29200 -9.00180 -8.88894 -8.53846 -8.46104 -6.04554 -4.01856 0.60066 0.98813 2.67173 2.88803 3.29136 3.31610 3.39686 3.43715 3.63832 3.99318 4.18056 4.45505 4.45817 4.55045 4.69247 4.83112 4.87189 4.97197 5.22187 5.27999 5.30204 5.32555 5.36937 5.51691 5.61732 5.65818 5.83311 5.97272 6.02519 6.09072 6.09847 6.13674 6.19983 6.30074 6.45941 6.58365 6.66806 6.74767 6.88842 7.00614 7.04031 7.19416 7.35923 7.63477 7.78834 8.31553 8.52475 8.99403 9.58169 11.08122 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.037445 B = 0.002613 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.593804 B =10713.093208 C =11246.229825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.129 4.129 4 C -0.002 4.002 5 C -0.511 4.511 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.126 3.874 14 N -0.715 5.715 15 C 0.557 3.443 16 O -0.545 6.545 17 C -0.158 4.158 18 C -0.049 4.049 19 C -0.144 4.144 20 C 0.128 3.872 21 C -0.187 4.187 22 C -0.010 4.010 23 C -0.109 4.109 24 C 0.051 3.949 25 O -0.302 6.302 26 H 0.030 0.970 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.018 0.982 33 H 0.014 0.986 34 H 0.262 0.738 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.398 0.602 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.781 2.892 27.133 27.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.064 4.064 3 C -0.187 4.187 4 C -0.040 4.040 5 C -0.548 4.548 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.543 5.543 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.003 3.997 14 N -0.367 5.367 15 C 0.344 3.656 16 O -0.424 6.424 17 C -0.162 4.162 18 C -0.068 4.068 19 C -0.163 4.163 20 C 0.082 3.918 21 C -0.188 4.188 22 C -0.029 4.029 23 C -0.146 4.146 24 C -0.024 4.024 25 O -0.216 6.216 26 H 0.049 0.951 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.037 0.963 33 H 0.032 0.968 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.235 0.765 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.097 0.903 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.356 2.394 27.058 27.265 hybrid contribution 0.351 -0.578 -0.266 0.726 sum -2.005 1.817 26.792 26.928 Atomic orbital electron populations 1.21786 0.94777 1.01335 1.00768 1.20698 0.95839 0.95936 0.93901 1.21782 1.00544 0.95560 1.00767 1.19594 0.96320 0.95514 0.92577 1.21070 1.31839 1.13339 0.88597 0.90380 1.25000 0.95713 0.96760 0.95996 1.69902 1.45937 1.40565 0.97881 0.86859 0.81346 0.83905 0.77660 1.20382 1.21515 1.18972 1.21676 0.99024 0.96081 0.82944 1.46077 1.53035 1.31948 1.05648 1.18061 0.80399 0.83995 0.83183 1.90768 1.38432 1.26322 1.86899 1.19861 1.04013 0.98586 0.93722 1.21070 0.94122 0.93172 0.98412 1.20172 1.04648 1.03254 0.88221 1.19874 0.92876 0.92368 0.86731 1.20690 1.03183 0.99292 0.95592 1.20321 0.95404 0.97964 0.89221 1.21804 1.00279 1.01984 0.90559 1.23877 0.98544 0.88335 0.91643 1.86792 1.83544 1.37250 1.13982 0.95081 0.90789 0.93329 0.93317 0.90795 0.95067 0.96325 0.96774 0.92796 0.91628 0.91643 0.76486 0.84523 0.84640 0.84363 0.88915 0.88731 0.90258 0.87372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 2 C -0.06 -1.14 0.54 -154.51 -0.08 -1.22 16 3 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 4 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 5 C -0.51 -13.55 8.20 -34.44 -0.28 -13.83 16 6 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 9 Si 0.87 21.44 27.47 -169.99 -4.67 16.78 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 13 C 0.13 2.09 4.56 -4.04 -0.02 2.07 16 14 N -0.72 -10.09 4.91 -61.33 -0.30 -10.39 16 15 C 0.56 8.36 7.77 -12.44 -0.10 8.26 16 16 O -0.55 -10.07 16.36 5.29 0.09 -9.99 16 17 C -0.16 -1.94 5.88 -104.92 -0.62 -2.56 16 18 C -0.05 -0.49 9.51 -39.30 -0.37 -0.86 16 19 C -0.14 -1.38 10.05 -39.36 -0.40 -1.77 16 20 C 0.13 1.30 7.05 -38.69 -0.27 1.03 16 21 C -0.19 -1.84 6.26 -104.12 -0.65 -2.49 16 22 C -0.01 -0.12 9.58 -39.36 -0.38 -0.49 16 23 C -0.11 -0.70 7.12 -26.50 -0.19 -0.89 16 24 C 0.05 0.30 8.00 38.05 0.30 0.60 16 25 O -0.30 -2.87 11.09 -19.71 -0.22 -3.09 16 26 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 27 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 31 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 32 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 33 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.40 4.70 4.20 -40.82 -0.17 4.53 16 38 H 0.14 1.08 6.40 -52.49 -0.34 0.75 16 39 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.14 1.57 7.66 -52.49 -0.40 1.17 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 351.15 15.07 5.29 5.29 Total: -1.00 -32.39 351.15 -8.03 -40.42 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.36 Total: 1.63 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -2.64 Total: -14.32 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.47 Total: -36.72 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.13 Total: -13.07 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.39 -8.03 -40.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805280254.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.389 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds