Wall clock time and date at job start Tue Mar 31 2020 10:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.53001 * 109.46875 * 240.00134 * 2 1 3 5 5 C 1.50698 * 109.47533 * 59.99994 * 4 2 1 6 6 H 1.08000 * 119.99473 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00409 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99998 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99842 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46829 * 90.00075 * 9 7 5 11 11 H 1.48504 * 109.47081 * 209.99746 * 9 7 5 12 12 H 1.48499 * 109.46960 * 329.99873 * 9 7 5 13 13 C 1.52997 * 109.47189 * 120.00109 * 2 1 3 14 14 N 1.46497 * 109.47244 * 299.99812 * 13 2 1 15 15 C 1.34775 * 120.00227 * 179.97438 * 14 13 2 16 16 O 1.21587 * 119.99887 * 0.02562 * 15 14 13 17 17 C 1.47601 * 120.00140 * 179.97438 * 15 14 13 18 18 C 1.39751 * 120.26926 * 0.02562 * 17 15 14 19 19 C 1.37463 * 120.20783 * 180.22241 * 18 17 15 20 20 C 1.39600 * 120.42922 * 359.97438 * 19 18 17 21 21 C 1.39276 * 119.08573 * 359.60079 * 20 19 18 22 22 C 1.37238 * 120.92526 * 0.61084 * 21 20 19 23 23 C 1.51677 * 106.93983 * 180.59031 * 21 20 19 24 24 C 1.54704 * 101.91226 * 15.73608 * 23 21 20 25 25 O 1.35991 * 129.71152 * 179.57991 * 20 19 18 26 26 H 1.09004 * 109.46835 * 300.00156 * 1 2 3 27 27 H 1.09003 * 109.47142 * 59.99546 * 1 2 3 28 28 H 1.08995 * 109.47325 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47630 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47345 * 300.00329 * 3 2 1 31 31 H 1.09003 * 109.46942 * 59.99657 * 3 2 1 32 32 H 1.09002 * 109.47023 * 180.02562 * 4 2 1 33 33 H 1.08996 * 109.47380 * 299.99972 * 4 2 1 34 34 H 0.97004 * 119.99848 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47292 * 179.97438 * 13 2 1 36 36 H 1.09004 * 109.47247 * 60.00238 * 13 2 1 37 37 H 0.96997 * 119.99826 * 0.02562 * 14 13 2 38 38 H 1.08000 * 119.89693 * 0.19169 * 18 17 15 39 39 H 1.08000 * 119.78974 * 179.97438 * 19 18 17 40 40 H 1.07995 * 120.04357 * 179.57041 * 22 21 20 41 41 H 1.09002 * 110.94940 * 257.56903 * 23 21 20 42 42 H 1.09001 * 110.94488 * 133.89904 * 23 21 20 43 43 H 1.08995 * 110.74237 * 92.89801 * 24 23 21 44 44 H 1.09005 * 110.74064 * 216.04562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0109 -2.4798 6 1 0.9171 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 1.4331 0.1387 -4.8058 9 14 2.9462 -1.9996 -3.9034 10 1 2.0884 -3.2110 -3.9489 11 1 3.7380 -1.9064 -5.1563 12 1 3.8666 -2.0880 -2.7414 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8769 -0.4914 3.6695 16 8 2.5759 -1.4800 3.7810 17 6 1.3854 0.2047 4.8746 18 6 0.5821 1.3417 4.7530 19 6 0.1288 1.9917 5.8762 20 6 0.4648 1.5238 7.1479 21 6 1.2583 0.3850 7.2624 22 6 1.7193 -0.2685 6.1472 23 6 1.4376 0.1186 8.7448 24 6 0.3233 0.9951 9.3639 25 8 0.1323 2.0167 8.3709 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1299 -0.7216 -1.2491 33 1 1.6766 -1.7489 -1.2493 34 1 1.6680 -0.1923 -5.6868 35 1 3.1300 -0.7217 1.2490 36 1 1.6767 -1.7490 1.2492 37 1 0.9938 0.7578 2.3564 38 1 0.3170 1.7113 3.7734 39 1 -0.4913 2.8701 5.7744 40 1 2.3395 -1.1464 6.2526 41 1 2.4218 0.4431 9.0829 42 1 1.2769 -0.9350 8.9736 43 1 -0.5900 0.4168 9.5035 44 1 0.6526 1.4279 10.3086 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805280254.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:21 Heat of formation + Delta-G solvation = -75.895080 kcal Electronic energy + Delta-G solvation = -24151.566923 eV Core-core repulsion = 20646.893764 eV Total energy + Delta-G solvation = -3504.673159 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.18908 -40.95745 -38.87385 -37.94290 -35.28905 -34.12261 -33.62743 -31.48855 -30.30596 -29.65900 -27.97871 -27.69589 -25.19348 -24.18069 -23.76275 -22.84391 -21.38397 -19.93385 -18.90856 -18.58259 -18.42198 -17.55734 -17.11146 -16.78537 -16.40755 -16.21271 -15.40260 -15.27808 -15.21163 -15.11881 -14.62638 -14.32221 -14.18381 -14.08529 -14.01798 -13.88102 -13.61777 -13.40640 -12.92923 -12.83695 -12.66550 -12.60305 -12.29634 -12.16108 -11.89059 -11.79309 -11.77050 -11.51349 -11.33988 -11.00199 -10.88853 -10.69808 -10.13589 -10.02486 -9.23158 -8.21705 -6.21571 -0.24037 0.24304 1.36176 1.39122 1.49002 1.74664 2.13274 2.25509 2.39585 2.74776 3.13792 3.40691 3.61401 3.70485 3.85191 3.91037 4.06171 4.12359 4.13950 4.15917 4.20707 4.47151 4.63849 4.64328 4.71057 4.77186 4.80234 4.86262 4.95500 4.98896 5.02471 5.08277 5.10510 5.22615 5.25686 5.30130 5.34387 5.40559 5.41925 5.47209 5.56552 5.70290 5.77282 6.06354 6.38715 6.53631 6.85322 7.18482 7.41126 8.93766 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.037445 B = 0.002613 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.593804 B =10713.093208 C =11246.229825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.058 4.058 3 C -0.125 4.125 4 C -0.004 4.004 5 C -0.500 4.500 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.951 5.951 9 Si 0.933 3.067 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.252 1.252 13 C 0.138 3.862 14 N -0.705 5.705 15 C 0.558 3.442 16 O -0.587 6.587 17 C -0.178 4.178 18 C -0.042 4.042 19 C -0.148 4.148 20 C 0.122 3.878 21 C -0.193 4.193 22 C -0.022 4.022 23 C -0.109 4.109 24 C 0.047 3.953 25 O -0.315 6.315 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.015 0.985 33 H 0.013 0.987 34 H 0.262 0.738 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.411 0.589 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.130 0.870 41 H 0.102 0.898 42 H 0.109 0.891 43 H 0.092 0.908 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.109 3.186 30.021 30.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.058 4.058 3 C -0.183 4.183 4 C -0.042 4.042 5 C -0.538 4.538 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.593 5.593 9 Si 0.759 3.241 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.176 1.176 13 C 0.014 3.986 14 N -0.357 5.357 15 C 0.347 3.653 16 O -0.469 6.469 17 C -0.181 4.181 18 C -0.061 4.061 19 C -0.166 4.166 20 C 0.076 3.924 21 C -0.194 4.194 22 C -0.041 4.041 23 C -0.145 4.145 24 C -0.027 4.027 25 O -0.229 6.229 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.033 0.967 33 H 0.032 0.968 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.250 0.750 38 H 0.176 0.824 39 H 0.175 0.825 40 H 0.148 0.852 41 H 0.120 0.880 42 H 0.127 0.873 43 H 0.110 0.890 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.701 2.709 29.974 30.217 hybrid contribution 0.390 -0.588 -1.035 1.252 sum -2.311 2.121 28.939 29.109 Atomic orbital electron populations 1.21724 0.93809 1.01358 1.01373 1.20556 0.96567 0.96148 0.92550 1.21722 1.00312 0.94854 1.01373 1.19576 0.95983 0.95531 0.93140 1.21360 1.30178 1.12270 0.90006 0.92819 1.25826 0.97476 0.99877 0.95946 1.70040 1.48155 1.42648 0.98414 0.85910 0.79902 0.80453 0.77885 1.19752 1.21531 1.17580 1.21334 0.98421 0.95688 0.83180 1.45866 1.53010 1.32119 1.04725 1.18461 0.79513 0.83422 0.83886 1.90743 1.40397 1.28266 1.87460 1.19692 1.05945 0.99877 0.92627 1.21250 0.93064 0.92100 0.99686 1.20455 1.04535 1.03739 0.87881 1.20155 0.92582 0.92259 0.87408 1.20981 1.02557 0.98955 0.96869 1.20344 0.95886 0.98155 0.89738 1.21930 1.01135 1.03187 0.88294 1.24190 0.98988 0.87854 0.91684 1.86780 1.83374 1.38608 1.14153 0.91237 0.93394 0.93621 0.93683 0.93387 0.91233 0.96701 0.96822 0.92891 0.92520 0.92423 0.74954 0.82392 0.82533 0.85205 0.87971 0.87262 0.89020 0.84739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 8.05 71.98 0.58 -3.51 16 2 C -0.06 -2.02 0.54 -52.18 -0.03 -2.05 16 3 C -0.13 -4.10 8.05 71.98 0.58 -3.52 16 4 C 0.00 -0.20 3.11 29.85 0.09 -0.10 16 5 C -0.50 -26.97 8.20 25.60 0.21 -26.76 16 6 H 0.05 3.11 5.92 -2.91 -0.02 3.09 16 7 C 0.00 0.28 5.47 84.65 0.46 0.75 16 8 N -0.95 -58.52 13.96 21.45 0.30 -58.22 16 9 Si 0.93 44.44 27.47 68.60 1.88 46.33 16 10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 13 C 0.14 4.41 4.56 86.38 0.39 4.81 16 14 N -0.70 -18.48 4.91 -466.21 -2.29 -20.77 16 15 C 0.56 16.17 7.77 86.71 0.67 16.85 16 16 O -0.59 -21.66 16.36 -3.99 -0.07 -21.73 16 17 C -0.18 -4.11 5.88 -20.06 -0.12 -4.23 16 18 C -0.04 -0.74 9.51 22.45 0.21 -0.52 16 19 C -0.15 -2.41 10.05 22.42 0.23 -2.19 16 20 C 0.12 2.21 7.05 22.85 0.16 2.38 16 21 C -0.19 -3.46 6.26 -19.54 -0.12 -3.58 16 22 C -0.02 -0.49 9.58 22.42 0.21 -0.27 16 23 C -0.11 -1.13 7.12 30.74 0.22 -0.92 16 24 C 0.05 0.40 8.00 72.56 0.58 0.98 16 25 O -0.32 -5.15 11.09 -93.45 -1.04 -6.19 16 26 H 0.07 1.70 6.86 -2.39 -0.02 1.69 16 27 H 0.05 1.82 6.62 -2.39 -0.02 1.80 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.05 1.82 6.62 -2.39 -0.02 1.81 16 31 H 0.07 1.71 6.86 -2.39 -0.02 1.70 16 32 H 0.01 0.67 7.20 -2.39 -0.02 0.66 16 33 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 34 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.41 8.40 4.20 -92.71 -0.39 8.01 16 38 H 0.16 1.92 6.40 -2.91 -0.02 1.91 16 39 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.13 2.98 7.66 -2.91 -0.02 2.96 16 41 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.13 0.43 8.14 -2.38 -0.02 0.42 16 Total: -1.00 -71.81 351.15 3.70 -68.11 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.57 Total: 14.37 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: 4.34 Total: -21.90 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -1.99 Total: -78.99 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -1.10 Total: -27.92 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.33 kcal Total: -71.81 3.70 -68.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805280254.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.782 kcal (2) G-P(sol) polarization free energy of solvation -71.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds