Wall clock time and date at job start Tue Mar 31 2020 10:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50710 * 119.99899 * 2 1 4 4 C 1.50703 * 120.00524 * 180.02562 * 2 1 3 5 5 C 1.53006 * 109.46682 * 354.75930 * 4 2 1 6 6 C 1.52998 * 109.47182 * 234.76552 * 4 2 1 7 7 C 1.50700 * 109.47422 * 114.75708 * 4 2 1 8 8 O 1.21281 * 119.99668 * 4.83897 * 7 4 2 9 9 N 1.34773 * 119.99662 * 184.82938 * 7 4 2 10 10 C 1.46505 * 119.99414 * 180.02562 * 9 7 4 11 11 C 1.50709 * 109.46854 * 180.02562 * 10 9 7 12 12 C 1.38302 * 119.92728 * 90.00231 * 11 10 9 13 13 C 1.38102 * 120.06342 * 179.97438 * 12 11 10 14 14 C 1.38881 * 119.93287 * 0.02562 * 13 12 11 15 15 O 1.35749 * 120.06741 * 180.02562 * 14 13 12 16 16 C 1.34831 * 117.00219 * 5.58458 * 15 14 13 17 17 H 1.08002 * 119.99659 * 354.93800 * 16 15 14 18 18 C 1.38655 * 120.00163 * 174.94064 * 16 15 14 19 19 N 1.31554 * 119.99896 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99923 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47168 * 60.00374 * 20 18 16 22 22 H 1.48508 * 109.46972 * 179.97438 * 20 18 16 23 23 H 1.48491 * 109.47402 * 299.99847 * 20 18 16 24 24 C 1.38875 * 119.86199 * 0.27425 * 14 13 12 25 25 C 1.38109 * 119.92977 * 359.44801 * 24 14 13 26 26 H 1.07996 * 119.99792 * 5.06940 * 1 2 3 27 27 H 1.08001 * 119.99455 * 185.07498 * 1 2 3 28 28 H 1.09004 * 109.46958 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47016 * 300.00254 * 3 2 1 30 30 H 1.08994 * 109.46644 * 60.00076 * 3 2 1 31 31 H 1.08997 * 109.46908 * 180.02562 * 5 4 2 32 32 H 1.08998 * 109.47276 * 300.00314 * 5 4 2 33 33 H 1.09001 * 109.46914 * 60.00156 * 5 4 2 34 34 H 1.09007 * 109.46742 * 299.99348 * 6 4 2 35 35 H 1.08998 * 109.47267 * 59.99385 * 6 4 2 36 36 H 1.08997 * 109.47283 * 179.97438 * 6 4 2 37 37 H 0.96996 * 120.00508 * 0.02562 * 9 7 4 38 38 H 1.08993 * 109.47391 * 60.00591 * 10 9 7 39 39 H 1.08998 * 109.47519 * 300.00226 * 10 9 7 40 40 H 1.07994 * 119.96906 * 0.02562 * 12 11 10 41 41 H 1.08005 * 120.03235 * 180.02562 * 13 12 11 42 42 H 0.97003 * 119.99699 * 180.02562 * 19 18 16 43 43 H 1.07996 * 120.03812 * 179.72805 * 24 14 13 44 44 H 1.07999 * 119.96442 * 180.27522 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3051 -0.0006 5 6 1.0746 -2.4651 0.1307 6 6 3.0393 -1.3311 1.1776 7 6 2.8301 -1.4420 -1.2908 8 8 2.8413 -0.5292 -2.0893 9 7 3.5033 -2.5788 -1.5573 10 6 4.2489 -2.7117 -2.8114 11 6 4.9061 -4.0669 -2.8639 12 6 4.2324 -5.1394 -3.4195 13 6 4.8321 -6.3824 -3.4695 14 6 6.1128 -6.5549 -2.9607 15 8 6.7051 -7.7754 -3.0089 16 6 6.0453 -8.7504 -3.6661 17 1 5.0543 -8.5654 -4.0535 18 6 6.6391 -9.9907 -3.8444 19 7 7.8464 -10.2158 -3.3729 20 14 5.7247 -11.3418 -4.7543 21 1 5.4182 -10.8890 -6.1350 22 1 6.5707 -12.5611 -4.8101 23 1 4.4588 -11.6493 -4.0416 24 6 6.7841 -5.4773 -2.3978 25 6 6.1813 -4.2355 -2.3559 26 1 -0.5399 0.9316 -0.0826 27 1 -0.5399 -0.9317 0.0827 28 1 3.1352 1.1060 0.0005 29 1 1.8001 1.8768 -0.8900 30 1 1.8002 1.8767 0.8900 31 1 1.6197 -3.4090 0.1307 32 1 0.5201 -2.3660 1.0638 33 1 0.3794 -2.4465 -0.7087 34 1 3.7440 -0.5046 1.0841 35 1 2.4849 -1.2320 2.1108 36 1 3.5841 -2.2751 1.1775 37 1 3.4941 -3.3089 -0.9188 38 1 5.0120 -1.9352 -2.8644 39 1 3.5649 -2.6070 -3.6536 40 1 3.2367 -5.0045 -3.8153 41 1 4.3057 -7.2194 -3.9039 42 1 8.2619 -11.0834 -3.4980 43 1 7.7784 -5.6093 -1.9973 44 1 6.7046 -3.3961 -1.9223 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819232980.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:56 Heat of formation + Delta-G solvation = -32.691026 kcal Electronic energy + Delta-G solvation = -23987.848819 eV Core-core repulsion = 20485.049128 eV Total energy + Delta-G solvation = -3502.799690 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.40285 -39.14530 -37.22591 -36.54637 -34.51750 -32.49599 -32.09320 -30.30476 -29.70845 -28.77853 -26.22648 -25.96455 -24.94890 -23.61272 -22.07830 -20.77688 -20.54999 -18.40247 -18.08102 -17.07373 -16.56769 -16.30225 -15.37302 -15.14787 -14.75661 -14.68496 -14.46133 -14.07584 -13.90883 -13.66480 -13.48575 -13.23535 -12.93260 -12.80760 -12.61837 -12.49810 -12.39795 -12.25326 -12.07660 -11.90820 -11.69363 -11.41915 -11.17028 -10.98800 -10.89156 -10.80216 -10.72280 -10.51686 -9.76945 -9.45293 -9.15661 -8.94717 -8.91643 -8.31031 -7.34666 -6.54642 -4.13698 1.95123 2.10401 2.12759 2.67817 3.07338 3.08449 3.11683 3.45960 3.88929 4.29167 4.45973 4.55137 4.68457 4.87655 4.99680 5.06025 5.14737 5.23112 5.29378 5.38793 5.40475 5.47015 5.50184 5.50481 5.59811 5.64228 5.75010 5.78282 5.84507 5.90819 5.93723 5.97102 6.09898 6.32564 6.43787 6.51611 6.58053 6.69572 6.78082 6.93349 7.11753 7.25043 7.32935 7.60277 7.69702 7.89853 8.27341 8.90557 9.58435 10.62766 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.029065 B = 0.002547 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.142037 B =10989.876038 C =11278.944441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.089 4.089 3 C -0.110 4.110 4 C -0.050 4.050 5 C -0.145 4.145 6 C -0.138 4.138 7 C 0.522 3.478 8 O -0.540 6.540 9 N -0.720 5.720 10 C 0.179 3.821 11 C -0.215 4.215 12 C -0.051 4.051 13 C -0.237 4.237 14 C 0.160 3.840 15 O -0.173 6.173 16 C -0.394 4.394 17 H 0.093 0.907 18 C 0.041 3.959 19 N -0.859 5.859 20 Si 0.942 3.058 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 C -0.195 4.195 25 C -0.054 4.054 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.401 0.599 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.108 0.892 41 H 0.128 0.872 42 H 0.272 0.728 43 H 0.118 0.882 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.407 15.121 7.689 20.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.089 4.089 3 C -0.167 4.167 4 C -0.053 4.053 5 C -0.202 4.202 6 C -0.196 4.196 7 C 0.307 3.693 8 O -0.417 6.417 9 N -0.371 5.371 10 C 0.057 3.943 11 C -0.216 4.216 12 C -0.070 4.070 13 C -0.256 4.256 14 C 0.106 3.894 15 O -0.075 6.075 16 C -0.470 4.470 17 H 0.110 0.890 18 C -0.164 4.164 19 N -0.493 5.493 20 Si 0.766 3.234 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.214 4.214 25 C -0.073 4.073 26 H 0.116 0.884 27 H 0.121 0.879 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.236 0.764 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.126 0.874 41 H 0.146 0.854 42 H 0.082 0.918 43 H 0.136 0.864 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.979 15.471 7.185 20.286 hybrid contribution -0.476 -1.146 -0.256 1.267 sum -11.455 14.325 6.929 19.607 Atomic orbital electron populations 1.23763 0.95228 1.02213 1.03002 1.21255 0.94832 0.94121 0.98715 1.20749 1.00238 0.94264 1.01408 1.19860 0.96101 0.95139 0.94219 1.21968 0.98870 0.96493 1.02876 1.21846 0.98448 1.02840 0.96460 1.20359 0.79036 0.82283 0.87606 1.90679 1.62455 1.39542 1.49011 1.46349 1.51226 1.17360 1.22213 1.19972 0.94328 0.94509 0.85499 1.19211 0.96742 0.94517 1.11122 1.20639 0.97996 0.92001 0.96331 1.21158 0.96826 0.98178 1.09446 1.19437 0.91170 0.86549 0.92293 1.83977 1.44732 1.14469 1.64356 1.21309 1.00707 0.90196 1.34816 0.88975 1.25317 0.96057 0.97802 0.97251 1.70025 1.13256 1.23906 1.42160 0.85766 0.78863 0.79176 0.79567 1.19411 1.20192 1.19426 1.20212 1.01188 0.91359 1.08687 1.20528 0.93915 0.95784 0.97105 0.88364 0.87870 0.92065 0.91332 0.92105 0.91597 0.91122 0.91665 0.91761 0.91301 0.91614 0.76450 0.91608 0.91667 0.87434 0.85430 0.91805 0.86379 0.86988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.88 13.34 29.01 0.39 -1.49 16 2 C -0.09 -0.91 4.39 -101.06 -0.44 -1.35 16 3 C -0.11 -1.09 8.77 36.01 0.32 -0.77 16 4 C -0.05 -0.50 0.69 -156.81 -0.11 -0.60 16 5 C -0.14 -1.21 6.99 37.16 0.26 -0.95 16 6 C -0.14 -1.15 8.20 37.16 0.30 -0.85 16 7 C 0.52 6.76 6.39 -10.99 -0.07 6.69 16 8 O -0.54 -8.85 15.29 5.56 0.08 -8.76 16 9 N -0.72 -8.85 5.37 -61.47 -0.33 -9.18 16 10 C 0.18 2.49 5.80 -5.19 -0.03 2.46 16 11 C -0.21 -3.39 5.25 -104.57 -0.55 -3.94 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 13 C -0.24 -4.84 9.17 -39.39 -0.36 -5.21 16 14 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 15 O -0.17 -4.75 9.76 0.05 0.00 -4.75 16 16 C -0.39 -10.65 9.49 30.89 0.29 -10.36 16 17 H 0.09 2.29 5.20 -52.49 -0.27 2.01 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -24.54 13.67 55.48 0.76 -23.78 16 20 Si 0.94 19.90 29.55 -169.99 -5.02 14.88 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 C -0.20 -3.88 9.99 -39.39 -0.39 -4.27 16 25 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 26 H 0.10 0.81 8.05 -52.49 -0.42 0.38 16 27 H 0.10 0.84 5.71 -52.49 -0.30 0.54 16 28 H 0.06 0.64 6.76 -51.93 -0.35 0.29 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.52 7.31 -51.93 -0.38 0.14 16 32 H 0.07 0.49 7.66 -51.93 -0.40 0.09 16 33 H 0.06 0.58 7.34 -51.93 -0.38 0.20 16 34 H 0.06 0.56 6.90 -51.93 -0.36 0.20 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.51 7.91 -51.93 -0.41 0.10 16 37 H 0.40 4.39 7.36 -40.82 -0.30 4.09 16 38 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 39 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 40 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.13 2.63 5.64 -52.48 -0.30 2.33 16 42 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 44 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 363.86 15.07 5.48 5.48 Total: -1.00 -30.70 363.86 -6.93 -37.63 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.38 Total: 7.25 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -1.52 Total: -18.77 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.43 Total: -32.96 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.09 Total: -13.51 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.70 -6.93 -37.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819232980.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.940 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds