Wall clock time and date at job start Tue Mar 31 2020 09:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47098 * 2 1 4 4 C 1.53004 * 109.46952 * 119.99497 * 2 1 3 5 5 C 1.52993 * 115.56555 * 280.29528 * 4 2 1 6 6 C 1.53079 * 117.51112 * 134.59161 * 4 2 1 7 7 C 1.53001 * 117.49778 * 65.98490 * 4 2 1 8 8 H 1.08993 * 117.49823 * 215.00230 * 7 4 2 9 9 N 1.46504 * 117.49519 * 359.97438 * 7 4 2 10 10 C 1.34789 * 119.99656 * 204.35503 * 9 7 4 11 11 O 1.21583 * 119.99982 * 359.97438 * 10 9 7 12 12 C 1.47529 * 119.99551 * 180.02562 * 10 9 7 13 13 C 1.39664 * 120.20349 * 359.97438 * 12 10 9 14 14 C 1.37825 * 119.92086 * 180.02562 * 13 12 10 15 15 C 1.38568 * 120.32545 * 0.26077 * 14 13 12 16 16 C 1.38029 * 120.39972 * 359.48338 * 15 14 13 17 17 C 1.38828 * 120.07086 * 0.51136 * 16 15 14 18 18 O 1.35522 * 120.16384 * 179.72664 * 17 16 15 19 19 C 1.34818 * 116.99607 * 354.40626 * 18 17 16 20 20 H 1.07997 * 120.00146 * 5.11821 * 19 18 17 21 21 C 1.38699 * 120.00194 * 185.12431 * 19 18 17 22 22 N 1.31521 * 119.99922 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00339 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47504 * 89.99515 * 23 21 19 25 25 H 1.48504 * 109.46940 * 209.99786 * 23 21 19 26 26 H 1.48499 * 109.46715 * 329.99215 * 23 21 19 27 27 H 1.08997 * 109.46798 * 300.00380 * 1 2 3 28 28 H 1.08996 * 109.47273 * 60.00264 * 1 2 3 29 29 H 1.08997 * 109.46873 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46798 * 239.99620 * 2 1 3 31 31 H 1.09000 * 109.47653 * 53.04782 * 3 2 1 32 32 H 1.08995 * 109.47118 * 173.05599 * 3 2 1 33 33 H 1.09009 * 109.46948 * 293.05316 * 3 2 1 34 34 H 1.08991 * 109.47389 * 205.69199 * 5 4 2 35 35 H 1.09005 * 109.47094 * 325.68789 * 5 4 2 36 36 H 1.09006 * 109.47395 * 85.68701 * 5 4 2 37 37 H 1.08996 * 117.49491 * 145.03918 * 6 4 2 38 38 H 1.09004 * 117.51065 * 359.97438 * 6 4 2 39 39 H 0.97000 * 120.00665 * 24.35729 * 9 7 4 40 40 H 1.08003 * 120.03570 * 0.05063 * 13 12 10 41 41 H 1.08007 * 119.83417 * 179.97438 * 14 13 12 42 42 H 1.07999 * 119.79912 * 179.72240 * 15 14 13 43 43 H 1.07999 * 119.96490 * 180.28149 * 16 15 14 44 44 H 0.96998 * 120.00412 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0275 0.1026 2.5385 6 6 3.1744 -1.7330 1.0682 7 6 1.7547 -2.2198 1.3659 8 1 1.5577 -2.6187 2.3609 9 7 1.0137 -2.8542 0.2729 10 6 0.3147 -3.9843 0.4994 11 8 0.2997 -4.4773 1.6107 12 6 -0.4311 -4.6234 -0.6014 13 6 -0.4162 -4.0610 -1.8797 14 6 -1.1155 -4.6627 -2.9037 15 6 -1.8387 -5.8214 -2.6706 16 6 -1.8583 -6.3916 -1.4137 17 6 -1.1599 -5.7995 -0.3702 18 8 -1.1824 -6.3547 0.8658 19 6 -1.9942 -7.4160 1.0453 20 1 -2.5256 -7.8376 0.2050 21 6 -2.1470 -7.9663 2.3092 22 7 -1.4996 -7.4531 3.3326 23 14 -3.2712 -9.4373 2.5579 24 1 -2.4945 -10.6900 2.3778 25 1 -3.8394 -9.3998 3.9294 26 1 -4.3737 -9.3911 1.5640 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.5788 1.9910 0.8212 32 1 3.1229 1.4450 0.1242 33 1 1.7817 1.9192 -0.9457 34 1 2.7836 -0.2821 3.2229 35 1 2.2450 1.1450 2.3057 36 1 1.0451 0.0319 3.0054 37 1 3.9112 -1.8113 1.8676 38 1 3.5570 -1.8851 0.0590 39 1 1.0260 -2.4612 -0.6138 40 1 0.1429 -3.1558 -2.0655 41 1 -1.1033 -4.2263 -3.8916 42 1 -2.3872 -6.2833 -3.4782 43 1 -2.4207 -7.2973 -1.2410 44 1 -1.6061 -7.8382 4.2165 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838034139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:42 Heat of formation + Delta-G solvation = -17.396200 kcal Electronic energy + Delta-G solvation = -24986.159821 eV Core-core repulsion = 21484.023364 eV Total energy + Delta-G solvation = -3502.136457 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.94868 -39.04090 -37.47548 -36.32701 -33.84042 -32.50874 -32.31551 -30.28302 -28.92631 -28.13680 -27.04260 -25.39633 -23.52512 -22.67520 -21.92579 -21.09132 -19.90052 -18.51642 -17.99534 -17.45908 -16.20071 -16.08883 -14.99756 -14.63644 -14.48682 -14.32702 -14.14614 -13.90599 -13.73908 -13.58767 -13.48298 -13.11865 -12.92289 -12.62597 -12.49386 -12.44875 -11.80583 -11.73124 -11.70670 -11.40142 -11.27284 -11.15947 -11.11837 -10.91233 -10.79437 -10.64590 -10.53824 -10.46049 -9.68177 -9.56965 -8.87891 -8.84874 -8.32393 -8.15523 -7.31010 -6.44207 -4.04226 1.70681 2.31652 3.11977 3.13079 3.17802 3.55553 3.60960 3.93593 4.00182 4.58385 4.65096 4.73173 4.90866 5.00275 5.07745 5.16749 5.20153 5.33377 5.40225 5.41592 5.51845 5.58985 5.69260 5.76931 5.77790 5.80049 5.84080 5.86320 5.96784 5.98681 6.02394 6.11520 6.18543 6.26294 6.33605 6.40597 6.56026 6.68630 6.90606 7.01233 7.06403 7.23902 7.29438 7.69015 7.92227 8.12709 8.95300 9.10163 9.67581 10.69536 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016842 B = 0.004058 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.144688 B = 6898.348831 C = 8126.191432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.057 4.057 3 C -0.144 4.144 4 C -0.134 4.134 5 C -0.117 4.117 6 C -0.191 4.191 7 C 0.106 3.894 8 H 0.135 0.865 9 N -0.712 5.712 10 C 0.557 3.443 11 O -0.499 6.499 12 C -0.227 4.227 13 C -0.038 4.038 14 C -0.230 4.230 15 C -0.050 4.050 16 C -0.237 4.237 17 C 0.190 3.810 18 O -0.123 6.123 19 C -0.404 4.404 20 H 0.094 0.906 21 C 0.045 3.955 22 N -0.832 5.832 23 Si 0.941 3.059 24 H -0.272 1.272 25 H -0.276 1.276 26 H -0.266 1.266 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.393 0.607 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.106 13.397 -7.833 16.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.076 4.076 3 C -0.201 4.201 4 C -0.136 4.136 5 C -0.174 4.174 6 C -0.229 4.229 7 C -0.001 4.001 8 H 0.153 0.847 9 N -0.366 5.366 10 C 0.347 3.653 11 O -0.372 6.372 12 C -0.232 4.232 13 C -0.057 4.057 14 C -0.249 4.249 15 C -0.069 4.069 16 C -0.257 4.257 17 C 0.130 3.870 18 O -0.021 6.021 19 C -0.480 4.480 20 H 0.111 0.889 21 C -0.163 4.163 22 N -0.463 5.463 23 Si 0.765 3.235 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.191 1.191 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.229 0.771 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.149 0.851 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.207 12.980 -6.469 15.409 hybrid contribution -0.481 -0.558 -0.522 0.903 sum 4.726 12.421 -6.991 15.017 Atomic orbital electron populations 1.21927 0.94611 1.03022 1.01454 1.20580 0.95930 0.95685 0.95388 1.21855 1.00957 0.95811 1.01454 1.22039 1.03105 0.91286 0.97173 1.21398 1.02047 0.99398 0.94564 1.23725 0.92675 1.03585 1.02960 1.21597 0.92979 0.92007 0.93548 0.84735 1.45392 1.52116 1.27377 1.11695 1.18237 0.78734 0.79613 0.88733 1.90938 1.60809 1.61927 1.23558 1.18819 1.10808 0.99348 0.94217 1.20739 0.96298 0.97170 0.91517 1.20452 1.06013 0.99936 0.98548 1.20895 0.95775 0.94477 0.95762 1.21159 1.07354 1.03984 0.93172 1.19265 0.91305 0.89961 0.86474 1.84175 1.54237 1.40373 1.23333 1.21501 1.24086 1.06740 0.95675 0.88868 1.25383 0.97645 0.99017 0.94237 1.70128 1.37713 1.38541 0.99943 0.85730 0.79445 0.79956 0.78395 1.19745 1.20123 1.19057 0.92622 0.92915 0.91510 0.91555 0.92346 0.92656 0.92941 0.92446 0.91686 0.92132 0.88405 0.88892 0.77149 0.87255 0.87280 0.87173 0.85061 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.94 37.16 0.33 -1.35 16 2 C -0.06 -0.58 2.24 -90.62 -0.20 -0.78 16 3 C -0.14 -1.21 8.16 37.16 0.30 -0.90 16 4 C -0.13 -1.54 1.78 -154.47 -0.27 -1.81 16 5 C -0.12 -1.20 9.62 37.15 0.36 -0.85 16 6 C -0.19 -2.27 9.75 -26.69 -0.26 -2.53 16 7 C 0.11 1.59 5.96 -67.93 -0.41 1.18 16 8 H 0.14 2.38 7.40 -51.93 -0.38 2.00 16 9 N -0.71 -11.74 3.96 -54.85 -0.22 -11.96 16 10 C 0.56 12.32 7.76 -12.47 -0.10 12.22 16 11 O -0.50 -13.71 14.74 -16.56 -0.24 -13.95 16 12 C -0.23 -4.95 5.89 -104.81 -0.62 -5.57 16 13 C -0.04 -0.66 9.53 -39.20 -0.37 -1.03 16 14 C -0.23 -3.78 10.02 -39.61 -0.40 -4.17 16 15 C -0.05 -0.89 10.03 -39.54 -0.40 -1.29 16 16 C -0.24 -5.11 9.16 -39.44 -0.36 -5.47 16 17 C 0.19 4.73 6.66 -38.60 -0.26 4.47 16 18 O -0.12 -3.65 7.84 -21.07 -0.17 -3.81 16 19 C -0.40 -11.47 9.49 30.90 0.29 -11.18 16 20 H 0.09 2.40 5.21 -52.49 -0.27 2.12 16 21 C 0.05 1.26 5.49 -17.51 -0.10 1.16 16 22 N -0.83 -25.13 13.67 55.48 0.76 -24.37 16 23 Si 0.94 20.55 29.55 -169.99 -5.02 15.53 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.87 6.10 -51.93 -0.32 0.56 16 30 H 0.07 0.65 7.37 -51.93 -0.38 0.27 16 31 H 0.06 0.48 6.79 -51.93 -0.35 0.12 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 34 H 0.06 0.56 7.90 -51.93 -0.41 0.15 16 35 H 0.06 0.57 5.78 -51.93 -0.30 0.27 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 1.08 8.05 -51.93 -0.42 0.66 16 38 H 0.09 1.05 8.09 -51.93 -0.42 0.63 16 39 H 0.39 5.37 4.97 -40.82 -0.20 5.16 16 40 H 0.11 1.47 6.40 -52.48 -0.34 1.14 16 41 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 42 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 43 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 44 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 356.43 15.07 5.37 5.37 Total: -1.00 -33.55 356.43 -8.16 -41.72 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -6.19 Total: 9.37 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -2.45 Total: -17.89 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.54 Total: -36.33 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.41 Total: -17.76 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.55 -8.16 -41.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838034139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.319 kcal (2) G-P(sol) polarization free energy of solvation -33.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds