Wall clock time and date at job start Tue Mar 31 2020 09:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47098 * 2 1 4 4 C 1.53004 * 109.46952 * 119.99497 * 2 1 3 5 5 C 1.52993 * 115.56555 * 280.29528 * 4 2 1 6 6 C 1.53079 * 117.51112 * 134.59161 * 4 2 1 7 7 C 1.53001 * 117.49778 * 65.98490 * 4 2 1 8 8 H 1.08993 * 117.49823 * 215.00230 * 7 4 2 9 9 N 1.46504 * 117.49519 * 359.97438 * 7 4 2 10 10 C 1.34789 * 119.99656 * 204.35503 * 9 7 4 11 11 O 1.21583 * 119.99982 * 359.97438 * 10 9 7 12 12 C 1.47529 * 119.99551 * 180.02562 * 10 9 7 13 13 C 1.39664 * 120.20349 * 359.97438 * 12 10 9 14 14 C 1.37825 * 119.92086 * 180.02562 * 13 12 10 15 15 C 1.38568 * 120.32545 * 0.26077 * 14 13 12 16 16 C 1.38029 * 120.39972 * 359.48338 * 15 14 13 17 17 C 1.38828 * 120.07086 * 0.51136 * 16 15 14 18 18 O 1.35522 * 120.16384 * 179.72664 * 17 16 15 19 19 C 1.34818 * 116.99607 * 354.40626 * 18 17 16 20 20 H 1.07997 * 120.00146 * 5.11821 * 19 18 17 21 21 C 1.38699 * 120.00194 * 185.12431 * 19 18 17 22 22 N 1.31521 * 119.99922 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00339 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47504 * 89.99515 * 23 21 19 25 25 H 1.48504 * 109.46940 * 209.99786 * 23 21 19 26 26 H 1.48499 * 109.46715 * 329.99215 * 23 21 19 27 27 H 1.08997 * 109.46798 * 300.00380 * 1 2 3 28 28 H 1.08996 * 109.47273 * 60.00264 * 1 2 3 29 29 H 1.08997 * 109.46873 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46798 * 239.99620 * 2 1 3 31 31 H 1.09000 * 109.47653 * 53.04782 * 3 2 1 32 32 H 1.08995 * 109.47118 * 173.05599 * 3 2 1 33 33 H 1.09009 * 109.46948 * 293.05316 * 3 2 1 34 34 H 1.08991 * 109.47389 * 205.69199 * 5 4 2 35 35 H 1.09005 * 109.47094 * 325.68789 * 5 4 2 36 36 H 1.09006 * 109.47395 * 85.68701 * 5 4 2 37 37 H 1.08996 * 117.49491 * 145.03918 * 6 4 2 38 38 H 1.09004 * 117.51065 * 359.97438 * 6 4 2 39 39 H 0.97000 * 120.00665 * 24.35729 * 9 7 4 40 40 H 1.08003 * 120.03570 * 0.05063 * 13 12 10 41 41 H 1.08007 * 119.83417 * 179.97438 * 14 13 12 42 42 H 1.07999 * 119.79912 * 179.72240 * 15 14 13 43 43 H 1.07999 * 119.96490 * 180.28149 * 16 15 14 44 44 H 0.96998 * 120.00412 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0275 0.1026 2.5385 6 6 3.1744 -1.7330 1.0682 7 6 1.7547 -2.2198 1.3659 8 1 1.5577 -2.6187 2.3609 9 7 1.0137 -2.8542 0.2729 10 6 0.3147 -3.9843 0.4994 11 8 0.2997 -4.4773 1.6107 12 6 -0.4311 -4.6234 -0.6014 13 6 -0.4162 -4.0610 -1.8797 14 6 -1.1155 -4.6627 -2.9037 15 6 -1.8387 -5.8214 -2.6706 16 6 -1.8583 -6.3916 -1.4137 17 6 -1.1599 -5.7995 -0.3702 18 8 -1.1824 -6.3547 0.8658 19 6 -1.9942 -7.4160 1.0453 20 1 -2.5256 -7.8376 0.2050 21 6 -2.1470 -7.9663 2.3092 22 7 -1.4996 -7.4531 3.3326 23 14 -3.2712 -9.4373 2.5579 24 1 -2.4945 -10.6900 2.3778 25 1 -3.8394 -9.3998 3.9294 26 1 -4.3737 -9.3911 1.5640 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.5788 1.9910 0.8212 32 1 3.1229 1.4450 0.1242 33 1 1.7817 1.9192 -0.9457 34 1 2.7836 -0.2821 3.2229 35 1 2.2450 1.1450 2.3057 36 1 1.0451 0.0319 3.0054 37 1 3.9112 -1.8113 1.8676 38 1 3.5570 -1.8851 0.0590 39 1 1.0260 -2.4612 -0.6138 40 1 0.1429 -3.1558 -2.0655 41 1 -1.1033 -4.2263 -3.8916 42 1 -2.3872 -6.2833 -3.4782 43 1 -2.4207 -7.2973 -1.2410 44 1 -1.6061 -7.8382 4.2165 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838034139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:41 Heat of formation + Delta-G solvation = -38.137645 kcal Electronic energy + Delta-G solvation = -24987.059238 eV Core-core repulsion = 21484.023364 eV Total energy + Delta-G solvation = -3503.035873 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.44366 -40.47250 -39.07998 -38.02470 -35.03569 -34.33270 -33.77505 -31.78350 -30.58084 -29.12513 -27.81033 -27.38571 -25.04968 -23.59154 -23.41144 -22.52930 -21.48792 -19.89257 -19.60328 -18.95746 -17.89633 -17.33087 -16.42193 -16.17537 -16.06381 -16.00989 -15.52161 -15.37729 -15.18716 -14.87968 -14.64985 -14.38960 -14.25512 -14.06354 -13.69909 -13.55402 -13.32871 -13.02975 -12.82867 -12.67655 -12.55042 -12.48912 -12.35410 -12.28096 -12.13007 -11.98436 -11.70326 -11.45535 -11.41763 -10.84038 -10.81150 -10.54750 -9.90568 -9.49406 -9.03590 -8.45026 -6.16306 0.10658 0.71700 1.31737 1.43448 1.51068 2.03360 2.15100 2.17846 2.79743 2.92277 3.22869 3.45484 3.62936 3.79084 3.89364 3.93423 4.03704 4.07714 4.27419 4.37506 4.43323 4.50804 4.57718 4.60928 4.78050 4.86605 4.88400 4.93236 4.94184 5.01066 5.02396 5.07185 5.08135 5.13006 5.16942 5.23351 5.36969 5.46912 5.49840 5.56477 5.59483 5.65912 5.68523 5.95551 6.15891 6.67248 6.94077 7.48066 7.79914 8.75532 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016842 B = 0.004058 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.144688 B = 6898.348831 C = 8126.191432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.058 4.058 3 C -0.140 4.140 4 C -0.108 4.108 5 C -0.120 4.120 6 C -0.170 4.170 7 C 0.058 3.942 8 H 0.094 0.906 9 N -0.683 5.683 10 C 0.550 3.450 11 O -0.569 6.569 12 C -0.245 4.245 13 C -0.031 4.031 14 C -0.199 4.199 15 C -0.039 4.039 16 C -0.257 4.257 17 C 0.149 3.851 18 O -0.189 6.189 19 C -0.429 4.429 20 H 0.107 0.893 21 C -0.022 4.022 22 N -0.905 5.905 23 Si 1.022 2.978 24 H -0.261 1.261 25 H -0.273 1.273 26 H -0.247 1.247 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.410 0.590 40 H 0.155 0.845 41 H 0.165 0.835 42 H 0.155 0.845 43 H 0.124 0.876 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.419 15.849 -12.558 20.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.076 4.076 3 C -0.197 4.197 4 C -0.109 4.109 5 C -0.177 4.177 6 C -0.208 4.208 7 C -0.049 4.049 8 H 0.112 0.888 9 N -0.336 5.336 10 C 0.340 3.660 11 O -0.448 6.448 12 C -0.249 4.249 13 C -0.049 4.049 14 C -0.217 4.217 15 C -0.057 4.057 16 C -0.276 4.276 17 C 0.094 3.906 18 O -0.091 6.091 19 C -0.505 4.505 20 H 0.125 0.875 21 C -0.221 4.221 22 N -0.541 5.541 23 Si 0.841 3.159 24 H -0.186 1.186 25 H -0.197 1.197 26 H -0.170 1.170 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.066 0.934 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.249 0.751 40 H 0.173 0.827 41 H 0.183 0.817 42 H 0.173 0.827 43 H 0.141 0.859 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.547 15.513 -11.307 19.982 hybrid contribution -0.468 -0.990 0.557 1.229 sum 5.079 14.523 -10.750 18.769 Atomic orbital electron populations 1.21919 0.95345 1.01472 1.02240 1.20664 0.95217 0.97076 0.94644 1.21825 1.01370 0.94096 1.02391 1.22170 1.01120 0.89031 0.98584 1.21471 1.01552 1.00648 0.94075 1.23809 0.91121 1.01753 1.04155 1.21622 0.96243 0.95335 0.91652 0.88834 1.45025 1.50417 1.25381 1.12810 1.18544 0.78912 0.80552 0.87982 1.90916 1.63455 1.64219 1.26222 1.19270 1.10488 0.98953 0.96237 1.21252 0.96043 0.98203 0.89398 1.21171 1.02168 0.98053 1.00333 1.21441 0.94977 0.94433 0.94865 1.21307 1.07665 1.04341 0.94302 1.20079 0.92740 0.91430 0.86342 1.84184 1.56856 1.42162 1.25927 1.22056 1.24610 1.07211 0.96588 0.87535 1.26771 0.99353 1.02485 0.93509 1.70329 1.41490 1.41716 1.00586 0.84559 0.77352 0.75401 0.78620 1.18624 1.19744 1.17049 0.93226 0.90860 0.94125 0.90412 0.92176 0.91876 0.91531 0.92202 0.89226 0.93370 0.87524 0.87188 0.75144 0.82715 0.81723 0.82722 0.85851 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.94 71.98 0.64 -2.36 16 2 C -0.06 -0.98 2.24 -10.79 -0.02 -1.00 16 3 C -0.14 -1.77 8.16 71.98 0.59 -1.18 16 4 C -0.11 -2.31 1.78 -52.16 -0.09 -2.40 16 5 C -0.12 -2.35 9.62 71.98 0.69 -1.66 16 6 C -0.17 -3.80 9.75 30.62 0.30 -3.50 16 7 C 0.06 1.80 5.96 44.99 0.27 2.07 16 8 H 0.09 3.72 7.40 -2.39 -0.02 3.70 16 9 N -0.68 -22.78 3.96 -445.69 -1.77 -24.55 16 10 C 0.55 25.80 7.76 86.69 0.67 26.47 16 11 O -0.57 -34.62 14.74 16.92 0.25 -34.37 16 12 C -0.24 -10.86 5.89 -19.99 -0.12 -10.98 16 13 C -0.03 -0.94 9.53 22.52 0.21 -0.72 16 14 C -0.20 -5.33 10.02 22.25 0.22 -5.11 16 15 C -0.04 -1.22 10.03 22.30 0.22 -0.99 16 16 C -0.26 -11.08 9.16 22.36 0.20 -10.88 16 17 C 0.15 7.82 6.66 22.91 0.15 7.97 16 18 O -0.19 -12.21 7.84 0.78 0.01 -12.21 16 19 C -0.43 -26.28 9.49 67.93 0.64 -25.64 16 20 H 0.11 5.84 5.21 -2.91 -0.02 5.83 16 21 C -0.02 -1.32 5.49 84.85 0.47 -0.86 16 22 N -0.91 -59.99 13.67 21.62 0.30 -59.70 16 23 Si 1.02 44.69 29.55 68.60 2.03 46.72 16 24 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.04 1.01 6.10 -2.39 -0.01 0.99 16 30 H 0.08 1.18 7.37 -2.39 -0.02 1.16 16 31 H 0.06 0.75 6.79 -2.39 -0.02 0.74 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.06 1.14 7.90 -2.39 -0.02 1.12 16 35 H 0.09 1.33 5.78 -2.38 -0.01 1.32 16 36 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.11 2.22 8.05 -2.39 -0.02 2.20 16 38 H 0.11 2.12 8.09 -2.39 -0.02 2.10 16 39 H 0.41 10.34 4.97 -92.71 -0.46 9.87 16 40 H 0.16 3.29 6.40 -2.91 -0.02 3.28 16 41 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 42 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 43 H 0.12 5.39 5.64 -2.91 -0.02 5.37 16 44 H 0.27 16.40 8.31 -92.71 -0.77 15.63 16 Total: -1.00 -87.18 356.43 6.43 -80.75 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: 0.56 Total: 34.12 kcal Atomic # 6 Polarization: -35.83 SS G_CDS: 5.06 Total: -30.77 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -1.47 Total: -84.25 kcal Atomic # 8 Polarization: -46.83 SS G_CDS: 0.26 Total: -46.58 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -87.18 6.43 -80.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838034139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.612 kcal (2) G-P(sol) polarization free energy of solvation -87.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds