Wall clock time and date at job start Tue Mar 31 2020 08:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47276 * 2 1 4 4 N 1.46501 * 110.43503 * 305.17754 * 3 2 1 5 5 C 1.34773 * 120.00042 * 295.27201 * 4 3 2 6 6 O 1.21594 * 119.99950 * 5.10047 * 5 4 3 7 7 C 1.47531 * 120.00035 * 185.10254 * 5 4 3 8 8 C 1.39670 * 120.20041 * 359.97438 * 7 5 4 9 9 C 1.37829 * 119.92314 * 179.97438 * 8 7 5 10 10 C 1.38577 * 120.32212 * 0.02562 * 9 8 7 11 11 C 1.38025 * 120.39967 * 359.97438 * 10 9 8 12 12 C 1.38836 * 120.07515 * 0.25039 * 11 10 9 13 13 O 1.35517 * 120.15781 * 179.74741 * 12 11 10 14 14 C 1.34814 * 117.00349 * 354.36734 * 13 12 11 15 15 H 1.07993 * 120.00100 * 5.05958 * 14 13 12 16 16 C 1.38700 * 119.99839 * 185.06011 * 14 13 12 17 17 N 1.31524 * 120.00037 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99992 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47393 * 59.99679 * 18 16 14 20 20 H 1.48504 * 109.47469 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47020 * 300.00029 * 18 16 14 22 22 C 1.54894 * 110.48524 * 67.71818 * 3 2 1 23 23 C 1.55237 * 102.58454 * 156.67700 * 22 3 2 24 24 C 1.54256 * 104.23537 * 322.08353 * 23 22 3 25 25 C 1.53879 * 106.60073 * 23.61250 * 24 23 22 26 26 H 1.09001 * 109.46985 * 184.98966 * 1 2 3 27 27 H 1.08997 * 109.47030 * 304.98894 * 1 2 3 28 28 H 1.08995 * 109.47368 * 64.98923 * 1 2 3 29 29 H 1.09001 * 109.47027 * 240.00197 * 2 1 3 30 30 H 1.08999 * 109.47307 * 120.00103 * 2 1 3 31 31 H 0.97002 * 119.99839 * 115.27264 * 4 3 2 32 32 H 1.08000 * 120.03739 * 359.95035 * 8 7 5 33 33 H 1.08000 * 119.83679 * 179.97438 * 9 8 7 34 34 H 1.08000 * 119.79831 * 180.02562 * 10 9 8 35 35 H 1.08007 * 119.96219 * 179.97438 * 11 10 9 36 36 H 0.97004 * 119.99648 * 179.97438 * 17 16 14 37 37 H 1.08994 * 110.75425 * 275.06692 * 22 3 2 38 38 H 1.08995 * 110.75280 * 38.44159 * 22 3 2 39 39 H 1.09008 * 110.46748 * 203.39233 * 23 22 3 40 40 H 1.09004 * 110.47245 * 80.78028 * 23 22 3 41 41 H 1.09002 * 110.03386 * 264.32811 * 24 23 22 42 42 H 1.09003 * 110.03623 * 142.89627 * 24 23 22 43 43 H 1.08993 * 110.03290 * 240.72023 * 25 24 23 44 44 H 1.09000 * 110.03280 * 119.28014 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 1.4649 2.1883 -1.1221 5 6 1.7636 1.8370 -2.3885 6 8 2.4346 0.8459 -2.6023 7 6 1.2763 2.6551 -3.5154 8 6 0.5047 3.7942 -3.2746 9 6 0.0529 4.5546 -4.3317 10 6 0.3599 4.1945 -5.6341 11 6 1.1214 3.0716 -5.8873 12 6 1.5812 2.2910 -4.8353 13 8 2.3247 1.1852 -5.0822 14 6 2.4854 0.8314 -6.3731 15 1 2.1006 1.4648 -7.1585 16 6 3.1449 -0.3463 -6.6923 17 7 3.6139 -1.1175 -5.7357 18 14 3.3683 -0.8363 -8.4810 19 1 4.1451 0.2131 -9.1885 20 1 4.0990 -2.1271 -8.5532 21 1 2.0376 -0.9847 -9.1234 22 6 1.7021 2.1369 1.3426 23 6 2.7601 3.2707 1.4127 24 6 4.0388 2.6328 0.8318 25 6 3.5810 1.4703 -0.0665 26 1 -0.3633 -1.0238 0.0894 27 1 -0.3633 0.5893 0.8419 28 1 -0.3634 0.4345 -0.9312 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.8691 2.9351 -0.9536 32 1 0.2621 4.0786 -2.2614 33 1 -0.5440 5.4349 -4.1439 34 1 0.0018 4.7968 -6.4560 35 1 1.3561 2.7972 -6.9053 36 1 4.0748 -1.9413 -5.9591 37 1 0.6927 2.5477 1.3216 38 1 1.8214 1.4449 2.1762 39 1 2.9223 3.5774 2.4461 40 1 2.4484 4.1210 0.8061 41 1 4.6677 2.2560 1.6384 42 1 4.5875 3.3669 0.2417 43 1 3.9877 0.5295 0.3042 44 1 3.9075 1.6403 -1.0925 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839406182.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:08 Heat of formation + Delta-G solvation = -47.876491 kcal Electronic energy + Delta-G solvation = -25700.021615 eV Core-core repulsion = 22196.563433 eV Total energy + Delta-G solvation = -3503.458182 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -40.08857 -38.89280 -36.94673 -36.25779 -33.38679 -32.32437 -32.07112 -30.11167 -28.89462 -28.65392 -27.04281 -25.34559 -23.16764 -22.55537 -21.53217 -20.47776 -20.12342 -18.70752 -17.95976 -17.50335 -16.12131 -15.73162 -15.19400 -14.71829 -14.62138 -14.29801 -14.27885 -14.04337 -13.74616 -13.52881 -13.21334 -12.84138 -12.74494 -12.57617 -12.41161 -11.81029 -11.69397 -11.38730 -11.26782 -11.17724 -11.09407 -10.95241 -10.87615 -10.82828 -10.73471 -10.60617 -10.46414 -10.30554 -10.24585 -9.50632 -8.85398 -8.62554 -8.37031 -8.22695 -7.27826 -6.42208 -4.01962 1.75870 2.34617 3.12829 3.14809 3.17135 3.77302 3.82334 3.95342 4.58942 4.65064 4.76321 4.91650 5.09630 5.20446 5.31396 5.42510 5.51384 5.52623 5.56632 5.60681 5.65836 5.71273 5.78036 5.83782 5.92100 5.94870 6.00327 6.10684 6.14506 6.18917 6.20002 6.32351 6.44723 6.50402 6.59272 6.65452 6.71498 6.75396 6.95230 7.08719 7.22761 7.27446 7.32054 7.72366 7.94856 8.26235 8.97602 9.21818 9.70385 10.71426 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.004955 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.162076 B = 5649.397317 C = 6722.395202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C 0.184 3.816 4 N -0.730 5.730 5 C 0.557 3.443 6 O -0.496 6.496 7 C -0.226 4.226 8 C -0.039 4.039 9 C -0.232 4.232 10 C -0.052 4.052 11 C -0.239 4.239 12 C 0.189 3.811 13 O -0.123 6.123 14 C -0.404 4.404 15 H 0.092 0.908 16 C 0.045 3.955 17 N -0.833 5.833 18 Si 0.939 3.061 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.269 1.269 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.130 4.130 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.389 0.611 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.131 0.869 36 H 0.271 0.729 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.798 7.829 11.255 14.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.097 3.903 4 N -0.385 5.385 5 C 0.346 3.654 6 O -0.370 6.370 7 C -0.231 4.231 8 C -0.058 4.058 9 C -0.251 4.251 10 C -0.071 4.071 11 C -0.258 4.258 12 C 0.129 3.871 13 O -0.021 6.021 14 C -0.480 4.480 15 H 0.110 0.890 16 C -0.162 4.162 17 N -0.464 5.464 18 Si 0.763 3.237 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.194 1.194 22 C -0.161 4.161 23 C -0.161 4.161 24 C -0.161 4.161 25 C -0.168 4.168 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.223 0.777 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.148 0.852 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.978 6.644 11.258 13.664 hybrid contribution -0.263 0.294 -0.932 1.012 sum -4.241 6.938 10.325 13.143 Atomic orbital electron populations 1.21670 0.96050 1.00875 1.01478 1.21912 0.95992 0.95976 1.03158 1.20921 0.92742 0.91295 0.85324 1.45907 1.51648 1.35881 1.05065 1.18129 0.80473 0.84881 0.81922 1.90913 1.37032 1.24987 1.84055 1.18934 1.11655 1.01344 0.91190 1.20760 0.94404 0.92753 0.97877 1.20453 1.08915 1.02950 0.92747 1.20883 0.94983 0.94978 0.96209 1.21157 1.06485 0.98592 0.99608 1.19288 0.88334 0.87654 0.91803 1.84173 1.55118 1.34491 1.28310 1.21427 1.38941 1.06967 0.80640 0.89045 1.25357 0.95986 0.94905 0.99988 1.70121 1.32247 1.11764 1.32250 0.85822 0.78943 0.78404 0.80485 1.19407 1.20183 1.19408 1.22839 0.98880 0.97779 0.96617 1.22413 0.95427 0.97872 1.00340 1.22126 0.97263 0.97930 0.98743 1.22507 0.94622 0.98077 1.01594 0.93339 0.93447 0.92564 0.89459 0.92101 0.77676 0.87159 0.87398 0.87292 0.85179 0.91885 0.91249 0.90298 0.91960 0.91669 0.92250 0.92121 0.91395 0.89907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.54 37.16 0.35 -1.63 16 2 C -0.13 -2.02 4.67 -26.73 -0.12 -2.15 16 3 C 0.18 2.64 0.43 -130.16 -0.06 2.59 16 4 N -0.73 -11.58 4.23 -47.10 -0.20 -11.78 16 5 C 0.56 11.87 6.93 -12.47 -0.09 11.78 16 6 O -0.50 -12.95 12.10 -16.57 -0.20 -13.15 16 7 C -0.23 -4.88 5.89 -104.81 -0.62 -5.50 16 8 C -0.04 -0.67 9.53 -39.20 -0.37 -1.04 16 9 C -0.23 -3.82 10.03 -39.61 -0.40 -4.22 16 10 C -0.05 -0.92 10.03 -39.53 -0.40 -1.32 16 11 C -0.24 -5.17 9.16 -39.44 -0.36 -5.53 16 12 C 0.19 4.68 6.66 -38.60 -0.26 4.42 16 13 O -0.12 -3.60 7.84 -21.04 -0.16 -3.77 16 14 C -0.40 -11.43 9.49 30.90 0.29 -11.14 16 15 H 0.09 2.35 5.21 -52.49 -0.27 2.08 16 16 C 0.05 1.27 5.49 -17.51 -0.10 1.17 16 17 N -0.83 -25.03 13.67 55.48 0.76 -24.27 16 18 Si 0.94 20.59 29.55 -169.99 -5.02 15.57 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 22 C -0.12 -1.32 5.11 -24.55 -0.13 -1.44 16 23 C -0.12 -1.28 6.80 -24.89 -0.17 -1.45 16 24 C -0.12 -1.52 6.80 -25.62 -0.17 -1.69 16 25 C -0.13 -2.02 5.65 -25.61 -0.14 -2.16 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.54 7.22 -51.93 -0.37 0.17 16 28 H 0.06 0.88 7.70 -51.93 -0.40 0.48 16 29 H 0.09 1.72 6.57 -51.93 -0.34 1.38 16 30 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 31 H 0.39 5.10 6.52 -40.82 -0.27 4.84 16 32 H 0.11 1.47 6.42 -52.49 -0.34 1.13 16 33 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 34 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.13 2.78 5.64 -52.48 -0.30 2.48 16 36 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.07 0.66 7.81 -51.93 -0.41 0.25 16 38 H 0.08 0.77 8.01 -51.93 -0.42 0.35 16 39 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.07 1.03 7.84 -51.93 -0.41 0.63 16 44 H 0.08 1.63 6.28 -51.93 -0.33 1.30 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -32.91 349.33 -8.65 -41.56 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -6.36 Total: 9.89 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -2.73 Total: -19.31 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.56 Total: -36.05 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.37 Total: -16.92 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.91 -8.65 -41.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839406182.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.316 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds