Wall clock time and date at job start Tue Mar 31 2020 08:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47276 * 2 1 4 4 N 1.46501 * 110.43503 * 305.17754 * 3 2 1 5 5 C 1.34773 * 120.00042 * 295.27201 * 4 3 2 6 6 O 1.21594 * 119.99950 * 5.10047 * 5 4 3 7 7 C 1.47531 * 120.00035 * 185.10254 * 5 4 3 8 8 C 1.39670 * 120.20041 * 359.97438 * 7 5 4 9 9 C 1.37829 * 119.92314 * 179.97438 * 8 7 5 10 10 C 1.38577 * 120.32212 * 0.02562 * 9 8 7 11 11 C 1.38025 * 120.39967 * 359.97438 * 10 9 8 12 12 C 1.38836 * 120.07515 * 0.25039 * 11 10 9 13 13 O 1.35517 * 120.15781 * 179.74741 * 12 11 10 14 14 C 1.34814 * 117.00349 * 354.36734 * 13 12 11 15 15 H 1.07993 * 120.00100 * 5.05958 * 14 13 12 16 16 C 1.38700 * 119.99839 * 185.06011 * 14 13 12 17 17 N 1.31524 * 120.00037 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99992 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47393 * 59.99679 * 18 16 14 20 20 H 1.48504 * 109.47469 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47020 * 300.00029 * 18 16 14 22 22 C 1.54894 * 110.48524 * 67.71818 * 3 2 1 23 23 C 1.55237 * 102.58454 * 156.67700 * 22 3 2 24 24 C 1.54256 * 104.23537 * 322.08353 * 23 22 3 25 25 C 1.53879 * 106.60073 * 23.61250 * 24 23 22 26 26 H 1.09001 * 109.46985 * 184.98966 * 1 2 3 27 27 H 1.08997 * 109.47030 * 304.98894 * 1 2 3 28 28 H 1.08995 * 109.47368 * 64.98923 * 1 2 3 29 29 H 1.09001 * 109.47027 * 240.00197 * 2 1 3 30 30 H 1.08999 * 109.47307 * 120.00103 * 2 1 3 31 31 H 0.97002 * 119.99839 * 115.27264 * 4 3 2 32 32 H 1.08000 * 120.03739 * 359.95035 * 8 7 5 33 33 H 1.08000 * 119.83679 * 179.97438 * 9 8 7 34 34 H 1.08000 * 119.79831 * 180.02562 * 10 9 8 35 35 H 1.08007 * 119.96219 * 179.97438 * 11 10 9 36 36 H 0.97004 * 119.99648 * 179.97438 * 17 16 14 37 37 H 1.08994 * 110.75425 * 275.06692 * 22 3 2 38 38 H 1.08995 * 110.75280 * 38.44159 * 22 3 2 39 39 H 1.09008 * 110.46748 * 203.39233 * 23 22 3 40 40 H 1.09004 * 110.47245 * 80.78028 * 23 22 3 41 41 H 1.09002 * 110.03386 * 264.32811 * 24 23 22 42 42 H 1.09003 * 110.03623 * 142.89627 * 24 23 22 43 43 H 1.08993 * 110.03290 * 240.72023 * 25 24 23 44 44 H 1.09000 * 110.03280 * 119.28014 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 1.4649 2.1883 -1.1221 5 6 1.7636 1.8370 -2.3885 6 8 2.4346 0.8459 -2.6023 7 6 1.2763 2.6551 -3.5154 8 6 0.5047 3.7942 -3.2746 9 6 0.0529 4.5546 -4.3317 10 6 0.3599 4.1945 -5.6341 11 6 1.1214 3.0716 -5.8873 12 6 1.5812 2.2910 -4.8353 13 8 2.3247 1.1852 -5.0822 14 6 2.4854 0.8314 -6.3731 15 1 2.1006 1.4648 -7.1585 16 6 3.1449 -0.3463 -6.6923 17 7 3.6139 -1.1175 -5.7357 18 14 3.3683 -0.8363 -8.4810 19 1 4.1451 0.2131 -9.1885 20 1 4.0990 -2.1271 -8.5532 21 1 2.0376 -0.9847 -9.1234 22 6 1.7021 2.1369 1.3426 23 6 2.7601 3.2707 1.4127 24 6 4.0388 2.6328 0.8318 25 6 3.5810 1.4703 -0.0665 26 1 -0.3633 -1.0238 0.0894 27 1 -0.3633 0.5893 0.8419 28 1 -0.3634 0.4345 -0.9312 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.8691 2.9351 -0.9536 32 1 0.2621 4.0786 -2.2614 33 1 -0.5440 5.4349 -4.1439 34 1 0.0018 4.7968 -6.4560 35 1 1.3561 2.7972 -6.9053 36 1 4.0748 -1.9413 -5.9591 37 1 0.6927 2.5477 1.3216 38 1 1.8214 1.4449 2.1762 39 1 2.9223 3.5774 2.4461 40 1 2.4484 4.1210 0.8061 41 1 4.6677 2.2560 1.6384 42 1 4.5875 3.3669 0.2417 43 1 3.9877 0.5295 0.3042 44 1 3.9075 1.6403 -1.0925 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839406182.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:06 Heat of formation + Delta-G solvation = -68.913166 kcal Electronic energy + Delta-G solvation = -25700.933833 eV Core-core repulsion = 22196.563433 eV Total energy + Delta-G solvation = -3504.370400 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.56644 -40.47001 -38.50691 -37.92367 -34.67979 -34.30875 -33.50019 -31.61623 -30.54697 -29.70366 -28.19405 -27.32832 -24.73072 -23.68824 -23.19752 -21.82265 -21.26984 -20.18870 -19.71221 -19.16668 -17.80810 -16.97764 -16.41300 -16.40076 -16.14141 -15.83824 -15.73473 -15.54709 -15.29490 -15.12777 -14.65678 -14.27432 -14.03454 -14.01333 -13.90547 -13.54853 -12.99145 -12.88218 -12.67958 -12.51879 -12.42086 -12.35164 -12.16997 -12.16208 -12.03410 -11.88888 -11.78384 -11.50062 -11.33612 -11.29130 -10.82367 -10.30851 -9.91975 -9.70770 -9.01650 -8.44222 -6.14972 0.16650 0.74080 1.30582 1.43598 1.48370 2.15339 2.20089 2.38851 2.89283 3.25137 3.49069 3.53141 3.72278 3.89600 4.04703 4.09521 4.22731 4.28310 4.38516 4.43614 4.52497 4.53654 4.61685 4.65389 4.78022 4.82662 4.88201 4.93890 5.00373 5.03686 5.07507 5.12400 5.13357 5.16014 5.28454 5.31176 5.34521 5.44078 5.50013 5.54209 5.63369 5.70554 5.88395 5.96545 6.18630 6.86222 6.95114 7.65472 7.82025 8.75870 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.004955 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.162076 B = 5649.397317 C = 6722.395202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.132 4.132 3 C 0.176 3.824 4 N -0.704 5.704 5 C 0.550 3.450 6 O -0.556 6.556 7 C -0.245 4.245 8 C -0.031 4.031 9 C -0.201 4.201 10 C -0.043 4.043 11 C -0.260 4.260 12 C 0.147 3.853 13 O -0.187 6.187 14 C -0.428 4.428 15 H 0.104 0.896 16 C -0.022 4.022 17 N -0.904 5.904 18 Si 1.020 2.980 19 H -0.254 1.254 20 H -0.273 1.273 21 H -0.255 1.255 22 C -0.110 4.110 23 C -0.116 4.116 24 C -0.120 4.120 25 C -0.134 4.134 26 H 0.050 0.950 27 H 0.085 0.915 28 H 0.030 0.970 29 H 0.027 0.973 30 H 0.083 0.917 31 H 0.407 0.593 32 H 0.160 0.840 33 H 0.163 0.837 34 H 0.152 0.848 35 H 0.121 0.879 36 H 0.269 0.731 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.059 0.941 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.848 11.995 13.334 19.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.171 4.171 3 C 0.090 3.910 4 N -0.359 5.359 5 C 0.340 3.660 6 O -0.434 6.434 7 C -0.249 4.249 8 C -0.050 4.050 9 C -0.219 4.219 10 C -0.061 4.061 11 C -0.279 4.279 12 C 0.092 3.908 13 O -0.090 6.090 14 C -0.504 4.504 15 H 0.121 0.879 16 C -0.221 4.221 17 N -0.540 5.540 18 Si 0.839 3.161 19 H -0.178 1.178 20 H -0.198 1.198 21 H -0.179 1.179 22 C -0.147 4.147 23 C -0.153 4.153 24 C -0.157 4.157 25 C -0.172 4.172 26 H 0.069 0.931 27 H 0.104 0.896 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.101 0.899 31 H 0.245 0.755 32 H 0.177 0.823 33 H 0.181 0.819 34 H 0.170 0.830 35 H 0.139 0.861 36 H 0.078 0.922 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -7.095 10.914 13.380 18.668 hybrid contribution 0.486 -0.665 -1.379 1.606 sum -6.610 10.250 12.001 17.110 Atomic orbital electron populations 1.21625 0.94430 1.01654 1.01641 1.21880 0.97381 0.96497 1.01329 1.21157 0.91651 0.91199 0.86944 1.45647 1.50726 1.35815 1.03671 1.18373 0.79818 0.84177 0.83668 1.90912 1.39722 1.27633 1.85144 1.19446 1.12254 1.02965 0.90257 1.21306 0.92205 0.90502 1.00946 1.21167 1.06209 1.03121 0.91446 1.21410 0.92743 0.93291 0.98674 1.21296 1.07982 1.00134 0.98504 1.20111 0.89002 0.87424 0.94287 1.84181 1.58838 1.37388 1.28567 1.21960 1.39390 1.07722 0.81283 0.87855 1.26725 0.95413 0.94547 1.05386 1.70327 1.35551 1.12924 1.35221 0.84652 0.79521 0.78180 0.73789 1.17838 1.19794 1.17866 1.22850 1.00358 0.97772 0.93752 1.22418 0.93480 0.97476 1.01926 1.22116 0.98933 0.96305 0.98365 1.22487 0.96115 0.99451 0.99182 0.93123 0.89610 0.95065 0.95416 0.89864 0.75533 0.82299 0.81919 0.83041 0.86146 0.92158 0.88618 0.88346 0.88990 0.91280 0.90535 0.93208 0.92196 0.95369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.54 71.98 0.69 -2.96 16 2 C -0.13 -4.18 4.67 30.59 0.14 -4.04 16 3 C 0.18 5.00 0.43 4.68 0.00 5.00 16 4 N -0.70 -21.98 4.23 -421.19 -1.78 -23.76 16 5 C 0.55 24.85 6.93 86.69 0.60 25.45 16 6 O -0.56 -32.36 12.10 16.88 0.20 -32.16 16 7 C -0.24 -10.74 5.89 -19.99 -0.12 -10.86 16 8 C -0.03 -0.95 9.53 22.52 0.21 -0.74 16 9 C -0.20 -5.47 10.03 22.25 0.22 -5.25 16 10 C -0.04 -1.38 10.03 22.30 0.22 -1.15 16 11 C -0.26 -11.38 9.16 22.36 0.20 -11.18 16 12 C 0.15 7.71 6.66 22.91 0.15 7.86 16 13 O -0.19 -12.09 7.84 0.87 0.01 -12.08 16 14 C -0.43 -26.33 9.49 67.93 0.64 -25.69 16 15 H 0.10 5.73 5.21 -2.91 -0.02 5.72 16 16 C -0.02 -1.30 5.49 84.85 0.47 -0.83 16 17 N -0.90 -60.04 13.67 21.62 0.30 -59.75 16 18 Si 1.02 45.07 29.55 68.60 2.03 47.10 16 19 H -0.25 -10.43 7.11 99.48 0.71 -9.72 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.25 -10.45 7.11 99.48 0.71 -9.74 16 22 C -0.11 -1.86 5.11 32.01 0.16 -1.70 16 23 C -0.12 -1.91 6.80 31.79 0.22 -1.70 16 24 C -0.12 -2.81 6.80 31.32 0.21 -2.60 16 25 C -0.13 -4.40 5.65 31.32 0.18 -4.22 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.09 1.63 7.22 -2.39 -0.02 1.61 16 28 H 0.03 0.97 7.70 -2.39 -0.02 0.95 16 29 H 0.03 1.20 6.57 -2.39 -0.02 1.19 16 30 H 0.08 2.19 8.07 -2.39 -0.02 2.18 16 31 H 0.41 9.32 6.52 -92.71 -0.60 8.71 16 32 H 0.16 3.25 6.42 -2.91 -0.02 3.24 16 33 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 34 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 35 H 0.12 5.37 5.64 -2.91 -0.02 5.35 16 36 H 0.27 16.45 8.31 -92.71 -0.77 15.68 16 37 H 0.10 1.21 7.81 -2.39 -0.02 1.19 16 38 H 0.10 1.40 8.01 -2.39 -0.02 1.38 16 39 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 41 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 42 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 43 H 0.06 1.98 7.84 -2.39 -0.02 1.97 16 44 H 0.03 1.22 6.28 -2.39 -0.01 1.21 16 Total: -1.00 -88.08 349.33 5.38 -82.70 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: 0.41 Total: 32.56 kcal Atomic # 6 Polarization: -38.82 SS G_CDS: 4.21 Total: -34.61 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -1.49 Total: -83.51 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: 0.21 Total: -44.24 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -88.08 5.38 -82.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839406182.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.791 kcal (2) G-P(sol) polarization free energy of solvation -88.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds