Wall clock time and date at job start Tue Mar 31 2020 09:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53006 * 109.47370 * 2 1 4 4 C 1.50702 * 109.47226 * 119.99783 * 2 1 3 5 5 C 1.37997 * 119.96725 * 295.71945 * 4 2 1 6 6 C 1.38580 * 120.43813 * 180.02562 * 5 4 2 7 7 C 1.37766 * 120.35887 * 0.02562 * 6 5 4 8 8 C 1.39761 * 119.92366 * 0.25321 * 7 6 5 9 9 C 1.47287 * 120.21346 * 179.72022 * 8 7 6 10 10 O 1.21525 * 119.99852 * 186.10698 * 9 8 7 11 11 O 1.34768 * 120.00108 * 6.11297 * 9 8 7 12 12 C 1.45203 * 116.99850 * 174.83256 * 11 9 8 13 13 C 1.53000 * 109.47086 * 185.00602 * 12 11 9 14 14 C 1.50709 * 115.54550 * 306.59231 * 13 12 11 15 15 H 1.08002 * 119.99529 * 144.06252 * 14 13 12 16 16 C 1.37872 * 120.00332 * 324.05853 * 14 13 12 17 17 N 1.31513 * 119.99932 * 3.03209 * 16 14 13 18 18 Si 1.86800 * 120.00136 * 183.03423 * 16 14 13 19 19 H 1.48507 * 109.46949 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47288 * 119.99969 * 18 16 14 21 21 H 1.48498 * 109.47019 * 240.00216 * 18 16 14 22 22 C 1.52991 * 117.50061 * 160.92689 * 13 12 11 23 23 C 1.52993 * 117.49951 * 92.26193 * 13 12 11 24 24 C 1.38926 * 119.96673 * 115.73701 * 4 2 1 25 25 N 1.38839 * 120.17581 * 359.97438 * 24 4 2 26 26 H 1.08999 * 109.47477 * 300.00178 * 1 2 3 27 27 H 1.09003 * 109.47074 * 60.00537 * 1 2 3 28 28 H 1.09004 * 109.47413 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47477 * 239.99822 * 2 1 3 30 30 H 1.08993 * 109.47089 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46583 * 299.99764 * 3 2 1 32 32 H 1.08999 * 109.46966 * 59.99509 * 3 2 1 33 33 H 1.08007 * 119.77840 * 359.97438 * 5 4 2 34 34 H 1.07996 * 119.81934 * 179.97438 * 6 5 4 35 35 H 1.08000 * 120.03806 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.47254 * 305.00577 * 12 11 9 37 37 H 1.09006 * 109.47204 * 65.00710 * 12 11 9 38 38 H 0.96996 * 120.00473 * 185.00737 * 17 16 14 39 39 H 1.09007 * 117.49912 * 359.97438 * 22 13 12 40 40 H 1.09001 * 117.50207 * 145.01997 * 22 13 12 41 41 H 1.09004 * 117.49890 * 214.97897 * 23 13 12 42 42 H 1.09002 * 117.50027 * 359.97438 * 23 13 12 43 43 H 0.97001 * 119.99999 * 29.79550 * 25 24 4 44 44 H 0.96998 * 119.99969 * 209.78121 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7729 -0.1890 2.4816 6 6 2.2307 -0.8338 3.6196 7 6 2.9509 -2.0035 3.5150 8 6 3.2272 -2.5418 2.2551 9 6 4.0020 -3.7887 2.1356 10 8 4.3353 -4.1943 1.0396 11 8 4.3412 -4.4800 3.2417 12 6 5.0035 -5.7570 3.0437 13 6 5.1962 -6.4465 4.3958 14 6 5.8932 -5.6259 5.4504 15 1 5.5965 -5.7123 6.4853 16 6 6.9095 -4.7650 5.0941 17 7 7.2307 -4.6153 3.8276 18 14 7.8302 -3.8113 6.4102 19 1 7.2805 -4.1549 7.7463 20 1 9.2715 -4.1657 6.3613 21 1 7.6701 -2.3548 6.1692 22 6 5.4540 -7.9545 4.3894 23 6 4.1025 -7.4108 4.8593 24 6 2.7563 -1.8893 1.1042 25 7 3.0184 -2.4160 -0.1534 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.2102 0.7282 2.5744 34 1 2.0223 -0.4167 4.5937 35 1 3.3055 -2.5016 4.4053 36 1 4.3917 -6.3873 2.3983 37 1 5.9751 -5.5939 2.5772 38 1 7.9918 -4.0666 3.5818 39 1 5.4859 -8.4556 3.4218 40 1 6.1274 -8.3533 5.1481 41 1 3.8873 -7.4520 5.9271 42 1 3.2454 -7.5536 4.2012 43 1 3.1050 -1.8255 -0.9181 44 1 3.1152 -3.3744 -0.2673 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849708756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:35:36 Heat of formation + Delta-G solvation = -39.722863 kcal Electronic energy + Delta-G solvation = -25078.796353 eV Core-core repulsion = 21575.691739 eV Total energy + Delta-G solvation = -3503.104614 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.13641 -38.73737 -36.69589 -35.27025 -35.09818 -33.94204 -32.14914 -30.21063 -28.33392 -27.25407 -26.48082 -25.36458 -23.94065 -22.44885 -21.24946 -20.79114 -19.39535 -19.13872 -17.36034 -16.72868 -16.47613 -16.35419 -15.48337 -15.23638 -14.82100 -14.53454 -14.31482 -13.95291 -13.84413 -13.68572 -13.43476 -13.03733 -12.51960 -12.29554 -12.24787 -11.92816 -11.87790 -11.66297 -11.34570 -11.22837 -11.03753 -10.86365 -10.77769 -10.69802 -10.48169 -10.32495 -10.22108 -9.81347 -9.39406 -9.30664 -8.94180 -8.72734 -8.59106 -8.21119 -7.41329 -5.97602 -4.09519 1.18323 1.73986 3.24169 3.27760 3.36782 3.39935 3.69002 4.15572 4.16953 4.38062 4.66255 4.76995 4.99900 5.10746 5.19489 5.32134 5.34138 5.48501 5.49213 5.54813 5.63836 5.69856 5.83187 5.86610 5.92648 6.04505 6.11311 6.13206 6.22182 6.26076 6.44858 6.51957 6.62512 6.64641 6.68678 6.76102 6.83869 7.00122 7.06642 7.24736 7.49829 7.60015 7.74786 7.93131 8.11732 8.34549 8.76927 8.90758 9.52847 10.99037 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017927 B = 0.004155 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.549214 B = 6737.279864 C = 7390.313209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.045 4.045 3 C -0.145 4.145 4 C -0.167 4.167 5 C -0.048 4.048 6 C -0.187 4.187 7 C -0.020 4.020 8 C -0.187 4.187 9 C 0.509 3.491 10 O -0.537 6.537 11 O -0.312 6.312 12 C 0.123 3.877 13 C 0.046 3.954 14 C -0.480 4.480 15 H 0.062 0.938 16 C 0.074 3.926 17 N -0.881 5.881 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.282 1.282 22 C -0.196 4.196 23 C -0.210 4.210 24 C 0.271 3.729 25 N -0.865 5.865 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.141 0.859 36 H 0.019 0.981 37 H 0.115 0.885 38 H 0.261 0.739 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.391 0.609 44 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.478 9.640 -6.721 16.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.063 4.063 3 C -0.202 4.202 4 C -0.172 4.172 5 C -0.067 4.067 6 C -0.207 4.207 7 C -0.039 4.039 8 C -0.193 4.193 9 C 0.355 3.645 10 O -0.431 6.431 11 O -0.226 6.226 12 C 0.049 3.951 13 C 0.046 3.954 14 C -0.517 4.517 15 H 0.080 0.920 16 C -0.129 4.129 17 N -0.519 5.519 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.234 4.234 23 C -0.247 4.247 24 C 0.163 3.837 25 N -0.411 5.411 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.159 0.841 36 H 0.037 0.963 37 H 0.133 0.867 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.221 0.779 44 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -11.243 9.611 -7.085 16.401 hybrid contribution 0.765 0.165 0.297 0.837 sum -10.477 9.776 -6.788 15.856 Atomic orbital electron populations 1.21834 0.94536 1.01928 1.01514 1.19863 0.95721 0.95473 0.95289 1.21891 1.01317 0.95372 1.01634 1.19356 1.04269 0.98168 0.95392 1.20885 0.96312 0.98060 0.91463 1.20863 1.03940 0.97463 0.98433 1.21437 0.92016 0.93635 0.96783 1.18999 1.07805 0.98700 0.93767 1.20829 0.76720 0.83823 0.83090 1.90567 1.53949 1.70097 1.28454 1.86533 1.68893 1.34085 1.33067 1.22829 0.97453 0.78162 0.96612 1.18939 0.95580 0.87153 0.93764 1.20491 1.17250 1.21567 0.92374 0.91977 1.24939 0.97077 0.95507 0.95328 1.69807 1.27032 1.39738 1.15327 0.86472 0.79495 0.79847 0.81839 1.19669 1.20983 1.20852 1.22985 0.98960 1.00922 1.00503 1.22954 0.91742 1.10109 0.99892 1.17425 0.89547 0.91370 0.85379 1.42706 1.80941 1.11609 1.05837 0.92513 0.92785 0.92585 0.90982 0.92553 0.92714 0.92419 0.86205 0.85895 0.84134 0.96284 0.86701 0.92869 0.91490 0.89807 0.90324 0.91364 0.77888 0.75322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.05 37.15 0.34 -0.90 16 2 C -0.04 -0.45 3.02 -91.77 -0.28 -0.72 16 3 C -0.14 -1.27 8.96 37.16 0.33 -0.94 16 4 C -0.17 -2.17 4.80 -104.45 -0.50 -2.67 16 5 C -0.05 -0.60 8.72 -39.54 -0.34 -0.94 16 6 C -0.19 -2.57 10.02 -39.63 -0.40 -2.97 16 7 C -0.02 -0.34 9.61 -39.19 -0.38 -0.72 16 8 C -0.19 -3.49 5.89 -104.82 -0.62 -4.11 16 9 C 0.51 11.34 7.85 34.41 0.27 11.61 16 10 O -0.54 -12.33 13.69 -19.29 -0.26 -12.59 16 11 O -0.31 -7.67 9.00 -40.68 -0.37 -8.03 16 12 C 0.12 3.08 4.39 37.16 0.16 3.24 16 13 C 0.05 1.15 2.20 -155.66 -0.34 0.81 16 14 C -0.48 -12.98 8.77 -34.44 -0.30 -13.28 16 15 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 16 C 0.07 2.00 5.33 -17.82 -0.10 1.91 16 17 N -0.88 -24.62 10.25 55.43 0.57 -24.05 16 18 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.20 -4.37 9.96 -26.70 -0.27 -4.63 16 23 C -0.21 -4.58 9.92 -26.70 -0.26 -4.84 16 24 C 0.27 4.28 6.74 -83.61 -0.56 3.72 16 25 N -0.86 -12.37 7.98 32.55 0.26 -12.11 16 26 H 0.06 0.47 7.64 -51.93 -0.40 0.07 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.69 5.95 -51.93 -0.31 0.38 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.48 7.15 -51.93 -0.37 0.10 16 33 H 0.12 1.15 7.07 -52.48 -0.37 0.78 16 34 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.14 2.53 7.62 -52.49 -0.40 2.13 16 36 H 0.02 0.45 8.04 -51.93 -0.42 0.03 16 37 H 0.12 3.19 5.98 -51.93 -0.31 2.88 16 38 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 41 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 42 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.39 4.49 7.08 -40.82 -0.29 4.20 16 44 H 0.41 6.50 6.43 -40.82 -0.26 6.23 16 LS Contribution 359.30 15.07 5.41 5.41 Total: -1.00 -29.49 359.30 -9.13 -38.62 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -6.48 Total: 12.19 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -3.25 Total: -15.44 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.83 Total: -36.16 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.63 Total: -20.63 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.49 -9.13 -38.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849708756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.105 kcal (2) G-P(sol) polarization free energy of solvation -29.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds