Wall clock time and date at job start Tue Mar 31 2020 09:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53006 * 109.47370 * 2 1 4 4 C 1.50702 * 109.47226 * 119.99783 * 2 1 3 5 5 C 1.37997 * 119.96725 * 295.71945 * 4 2 1 6 6 C 1.38580 * 120.43813 * 180.02562 * 5 4 2 7 7 C 1.37766 * 120.35887 * 0.02562 * 6 5 4 8 8 C 1.39761 * 119.92366 * 0.25321 * 7 6 5 9 9 C 1.47287 * 120.21346 * 179.72022 * 8 7 6 10 10 O 1.21525 * 119.99852 * 186.10698 * 9 8 7 11 11 O 1.34768 * 120.00108 * 6.11297 * 9 8 7 12 12 C 1.45203 * 116.99850 * 174.83256 * 11 9 8 13 13 C 1.53000 * 109.47086 * 185.00602 * 12 11 9 14 14 C 1.50709 * 115.54550 * 306.59231 * 13 12 11 15 15 H 1.08002 * 119.99529 * 144.06252 * 14 13 12 16 16 C 1.37872 * 120.00332 * 324.05853 * 14 13 12 17 17 N 1.31513 * 119.99932 * 3.03209 * 16 14 13 18 18 Si 1.86800 * 120.00136 * 183.03423 * 16 14 13 19 19 H 1.48507 * 109.46949 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47288 * 119.99969 * 18 16 14 21 21 H 1.48498 * 109.47019 * 240.00216 * 18 16 14 22 22 C 1.52991 * 117.50061 * 160.92689 * 13 12 11 23 23 C 1.52993 * 117.49951 * 92.26193 * 13 12 11 24 24 C 1.38926 * 119.96673 * 115.73701 * 4 2 1 25 25 N 1.38839 * 120.17581 * 359.97438 * 24 4 2 26 26 H 1.08999 * 109.47477 * 300.00178 * 1 2 3 27 27 H 1.09003 * 109.47074 * 60.00537 * 1 2 3 28 28 H 1.09004 * 109.47413 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47477 * 239.99822 * 2 1 3 30 30 H 1.08993 * 109.47089 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46583 * 299.99764 * 3 2 1 32 32 H 1.08999 * 109.46966 * 59.99509 * 3 2 1 33 33 H 1.08007 * 119.77840 * 359.97438 * 5 4 2 34 34 H 1.07996 * 119.81934 * 179.97438 * 6 5 4 35 35 H 1.08000 * 120.03806 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.47254 * 305.00577 * 12 11 9 37 37 H 1.09006 * 109.47204 * 65.00710 * 12 11 9 38 38 H 0.96996 * 120.00473 * 185.00737 * 17 16 14 39 39 H 1.09007 * 117.49912 * 359.97438 * 22 13 12 40 40 H 1.09001 * 117.50207 * 145.01997 * 22 13 12 41 41 H 1.09004 * 117.49890 * 214.97897 * 23 13 12 42 42 H 1.09002 * 117.50027 * 359.97438 * 23 13 12 43 43 H 0.97001 * 119.99999 * 29.79550 * 25 24 4 44 44 H 0.96998 * 119.99969 * 209.78121 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7729 -0.1890 2.4816 6 6 2.2307 -0.8338 3.6196 7 6 2.9509 -2.0035 3.5150 8 6 3.2272 -2.5418 2.2551 9 6 4.0020 -3.7887 2.1356 10 8 4.3353 -4.1943 1.0396 11 8 4.3412 -4.4800 3.2417 12 6 5.0035 -5.7570 3.0437 13 6 5.1962 -6.4465 4.3958 14 6 5.8932 -5.6259 5.4504 15 1 5.5965 -5.7123 6.4853 16 6 6.9095 -4.7650 5.0941 17 7 7.2307 -4.6153 3.8276 18 14 7.8302 -3.8113 6.4102 19 1 7.2805 -4.1549 7.7463 20 1 9.2715 -4.1657 6.3613 21 1 7.6701 -2.3548 6.1692 22 6 5.4540 -7.9545 4.3894 23 6 4.1025 -7.4108 4.8593 24 6 2.7563 -1.8893 1.1042 25 7 3.0184 -2.4160 -0.1534 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.2102 0.7282 2.5744 34 1 2.0223 -0.4167 4.5937 35 1 3.3055 -2.5016 4.4053 36 1 4.3917 -6.3873 2.3983 37 1 5.9751 -5.5939 2.5772 38 1 7.9918 -4.0666 3.5818 39 1 5.4859 -8.4556 3.4218 40 1 6.1274 -8.3533 5.1481 41 1 3.8873 -7.4520 5.9271 42 1 3.2454 -7.5536 4.2012 43 1 3.1050 -1.8255 -0.9181 44 1 3.1152 -3.3744 -0.2673 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849708756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:35:34 Heat of formation + Delta-G solvation = -54.325242 kcal Electronic energy + Delta-G solvation = -25079.429560 eV Core-core repulsion = 21575.691739 eV Total energy + Delta-G solvation = -3503.737820 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.53885 -40.21156 -38.49797 -36.81233 -36.23406 -35.19748 -34.19095 -31.40622 -29.46574 -28.32392 -27.90473 -27.39519 -25.17817 -23.65821 -23.01232 -22.04637 -21.09389 -20.64769 -18.58559 -18.52965 -17.90122 -17.74165 -17.10762 -17.03949 -16.45540 -15.85485 -15.69663 -15.22273 -15.02523 -14.90932 -14.65635 -14.36510 -13.90425 -13.82210 -13.45396 -13.26227 -12.99612 -12.97409 -12.90038 -12.82622 -12.69196 -12.30407 -12.14603 -11.98588 -11.79184 -11.74003 -11.55889 -11.36531 -11.28308 -10.97069 -10.87173 -10.67744 -10.16481 -9.77950 -8.57662 -8.01327 -6.19784 -0.10221 0.58537 1.40096 1.43180 1.53979 1.73312 2.05343 2.42156 2.88967 3.01051 3.05038 3.55654 3.72711 3.85536 4.03109 4.22245 4.28717 4.31988 4.37500 4.38894 4.48084 4.50387 4.58841 4.72855 4.79313 4.88998 4.89217 4.96247 5.02496 5.06514 5.10562 5.18462 5.21730 5.28933 5.41327 5.43746 5.46994 5.50463 5.57165 5.63074 5.82214 5.84331 5.97798 6.32130 6.55417 6.78546 6.94261 7.06770 7.44513 8.93067 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017927 B = 0.004155 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.549214 B = 6737.279864 C = 7390.313209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.045 4.045 3 C -0.143 4.143 4 C -0.159 4.159 5 C -0.035 4.035 6 C -0.179 4.179 7 C -0.041 4.041 8 C -0.222 4.222 9 C 0.498 3.502 10 O -0.556 6.556 11 O -0.329 6.329 12 C 0.133 3.867 13 C 0.006 3.994 14 C -0.494 4.494 15 H 0.057 0.943 16 C 0.030 3.970 17 N -0.906 5.906 18 Si 0.954 3.046 19 H -0.264 1.264 20 H -0.280 1.280 21 H -0.284 1.284 22 C -0.185 4.185 23 C -0.189 4.189 24 C 0.262 3.738 25 N -0.860 5.860 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.161 0.839 34 H 0.151 0.849 35 H 0.119 0.881 36 H 0.023 0.977 37 H 0.083 0.917 38 H 0.257 0.743 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.405 0.595 44 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.315 11.802 -6.621 18.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.063 4.063 3 C -0.200 4.200 4 C -0.163 4.163 5 C -0.054 4.054 6 C -0.199 4.199 7 C -0.060 4.060 8 C -0.228 4.228 9 C 0.347 3.653 10 O -0.451 6.451 11 O -0.243 6.243 12 C 0.059 3.941 13 C 0.005 3.995 14 C -0.532 4.532 15 H 0.075 0.925 16 C -0.170 4.170 17 N -0.545 5.545 18 Si 0.780 3.220 19 H -0.188 1.188 20 H -0.205 1.205 21 H -0.210 1.210 22 C -0.223 4.223 23 C -0.226 4.226 24 C 0.153 3.847 25 N -0.406 5.406 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.178 0.822 34 H 0.168 0.832 35 H 0.137 0.863 36 H 0.042 0.958 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.237 0.763 44 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -13.091 11.779 -6.991 18.947 hybrid contribution 1.242 -0.458 0.205 1.340 sum -11.848 11.321 -6.786 17.737 Atomic orbital electron populations 1.21821 0.93159 1.01619 1.02952 1.19960 0.96731 0.96002 0.93651 1.21883 1.00584 0.94407 1.03118 1.19771 1.02547 0.96733 0.97270 1.21343 0.94967 0.98671 0.90395 1.21160 1.02344 0.95897 1.00459 1.21367 0.93865 0.95326 0.95430 1.19021 1.09894 0.98174 0.95748 1.21599 0.76673 0.84686 0.82385 1.90531 1.55001 1.70876 1.28711 1.86535 1.69213 1.34107 1.34479 1.22535 0.95981 0.78857 0.96708 1.19076 0.98381 0.88387 0.93632 1.20725 1.17637 1.22222 0.92585 0.92498 1.25625 0.97924 0.96394 0.97032 1.69991 1.27222 1.40421 1.16825 0.85566 0.78378 0.78259 0.79835 1.18800 1.20546 1.21046 1.22995 0.99301 0.98708 1.01315 1.22967 0.91731 1.07234 1.00633 1.17655 0.89945 0.92218 0.84877 1.42667 1.80537 1.11385 1.06048 0.91519 0.90990 0.93781 0.90904 0.93732 0.90902 0.91365 0.82199 0.83179 0.86341 0.95841 0.89881 0.93378 0.90083 0.89600 0.89551 0.89765 0.76320 0.76303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.05 71.98 0.65 -1.27 16 2 C -0.04 -0.76 3.02 -11.54 -0.03 -0.79 16 3 C -0.14 -1.97 8.96 71.98 0.64 -1.33 16 4 C -0.16 -3.76 4.80 -19.76 -0.09 -3.86 16 5 C -0.04 -0.75 8.72 22.29 0.19 -0.56 16 6 C -0.18 -4.58 10.02 22.24 0.22 -4.36 16 7 C -0.04 -1.43 9.61 22.53 0.22 -1.21 16 8 C -0.22 -8.59 5.89 -19.99 -0.12 -8.71 16 9 C 0.50 23.42 7.85 70.20 0.55 23.97 16 10 O -0.56 -26.95 13.69 19.75 0.27 -26.68 16 11 O -0.33 -17.04 9.00 -56.79 -0.51 -17.55 16 12 C 0.13 6.96 4.39 71.98 0.32 7.27 16 13 C 0.01 0.29 2.20 -52.93 -0.12 0.17 16 14 C -0.49 -27.31 8.77 25.60 0.22 -27.08 16 15 H 0.06 3.11 7.82 -2.91 -0.02 3.08 16 16 C 0.03 1.65 5.33 84.65 0.45 2.10 16 17 N -0.91 -52.54 10.25 21.45 0.22 -52.32 16 18 Si 0.95 43.90 29.54 68.60 2.03 45.93 16 19 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 22 C -0.19 -8.21 9.96 30.62 0.30 -7.90 16 23 C -0.19 -8.11 9.92 30.62 0.30 -7.80 16 24 C 0.26 8.22 6.74 38.73 0.26 8.48 16 25 N -0.86 -24.79 7.98 -50.93 -0.41 -25.20 16 26 H 0.07 0.80 7.64 -2.39 -0.02 0.79 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.04 0.72 8.14 -2.38 -0.02 0.71 16 29 H 0.07 1.22 5.95 -2.39 -0.01 1.21 16 30 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.81 7.15 -2.39 -0.02 0.79 16 33 H 0.16 2.18 7.07 -2.91 -0.02 2.16 16 34 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 35 H 0.12 4.54 7.62 -2.91 -0.02 4.51 16 36 H 0.02 1.16 8.04 -2.38 -0.02 1.14 16 37 H 0.08 4.87 5.98 -2.38 -0.01 4.86 16 38 H 0.26 14.43 8.32 -92.71 -0.77 13.66 16 39 H 0.08 3.32 8.14 -2.38 -0.02 3.30 16 40 H 0.09 3.73 8.14 -2.39 -0.02 3.71 16 41 H 0.09 3.55 8.14 -2.38 -0.02 3.53 16 42 H 0.08 3.32 8.14 -2.39 -0.02 3.31 16 43 H 0.40 9.07 7.08 -92.71 -0.66 8.41 16 44 H 0.40 13.19 6.43 -92.71 -0.60 12.60 16 Total: -1.00 -66.30 359.30 5.35 -60.96 By element: Atomic # 1 Polarization: 37.97 SS G_CDS: -0.23 Total: 37.73 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: 3.98 Total: -22.87 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -0.19 Total: -77.52 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -0.24 Total: -44.23 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -66.30 5.35 -60.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849708756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.631 kcal (2) G-P(sol) polarization free energy of solvation -66.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds