Wall clock time and date at job start Tue Mar 31 2020 09:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52996 * 109.47696 * 2 1 4 4 C 1.50703 * 109.47242 * 120.00033 * 2 1 3 5 5 O 1.21278 * 120.00360 * 119.99874 * 4 2 1 6 6 N 1.34780 * 119.99732 * 300.00232 * 4 2 1 7 7 O 1.41606 * 119.99743 * 185.01838 * 6 4 2 8 8 C 1.42903 * 113.99725 * 185.01040 * 7 6 4 9 9 C 1.52997 * 109.46974 * 184.97424 * 8 7 6 10 10 C 1.50700 * 115.54919 * 295.65923 * 9 8 7 11 11 H 1.08007 * 119.99590 * 95.20309 * 10 9 8 12 12 C 1.37875 * 120.00078 * 274.92062 * 10 9 8 13 13 N 1.31517 * 120.00219 * 355.43102 * 12 10 9 14 14 Si 1.86795 * 119.99936 * 175.42246 * 12 10 9 15 15 H 1.48498 * 109.47367 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46935 * 120.00360 * 14 12 10 17 17 H 1.48501 * 109.47373 * 240.00657 * 14 12 10 18 18 C 1.53005 * 117.49837 * 81.33061 * 9 8 7 19 19 C 1.52995 * 117.49776 * 149.98892 * 9 8 7 20 20 C 1.50705 * 109.47470 * 239.99671 * 2 1 3 21 21 C 1.38238 * 119.99547 * 359.73199 * 20 2 1 22 22 C 1.38238 * 119.99732 * 179.76782 * 21 20 2 23 23 C 1.38232 * 119.99989 * 0.50039 * 22 21 20 24 24 C 1.38238 * 119.99813 * 359.74885 * 23 22 21 25 25 C 1.38230 * 120.00290 * 0.02562 * 24 23 22 26 26 H 1.09003 * 109.47345 * 300.00169 * 1 2 3 27 27 H 1.09005 * 109.46982 * 60.00303 * 1 2 3 28 28 H 1.09005 * 109.47413 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47879 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.47009 * 300.00311 * 3 2 1 31 31 H 1.09003 * 109.46861 * 59.99535 * 3 2 1 32 32 H 0.96999 * 120.00149 * 5.01631 * 6 4 2 33 33 H 1.09000 * 109.46733 * 64.97552 * 8 7 6 34 34 H 1.09000 * 109.47050 * 304.97362 * 8 7 6 35 35 H 0.96989 * 120.00156 * 184.99864 * 13 12 10 36 36 H 1.08994 * 117.49806 * 215.00394 * 18 9 8 37 37 H 1.08996 * 117.49737 * 0.02562 * 18 9 8 38 38 H 1.09004 * 117.49883 * 359.97438 * 19 9 8 39 39 H 1.09001 * 117.50093 * 144.97283 * 19 9 8 40 40 H 1.08002 * 120.00079 * 359.97438 * 21 20 2 41 41 H 1.08001 * 119.99499 * 180.23005 * 22 21 20 42 42 H 1.07994 * 119.99912 * 179.72840 * 23 22 21 43 43 H 1.08008 * 119.99622 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.00243 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7066 -0.2499 2.4546 7 8 2.2638 -0.8521 3.6088 8 6 1.7467 -0.3399 4.8386 9 6 2.5027 -0.9685 6.0109 10 6 2.3360 -2.4580 6.1679 11 1 3.0650 -3.1309 5.7408 12 6 1.2562 -2.9615 6.8617 13 7 0.4209 -2.1426 7.4628 14 14 0.9795 -4.8069 6.9478 15 1 2.0529 -5.5040 6.1948 16 1 1.0054 -5.2456 8.3663 17 1 -0.3394 -5.1381 6.3511 18 6 3.8600 -0.3666 6.3804 19 6 2.6477 -0.1355 7.2860 20 6 2.0323 -0.7105 -1.2304 21 6 1.1340 -1.2407 -2.1375 22 6 1.5948 -1.8883 -3.2686 23 6 2.9539 -2.0146 -3.4874 24 6 3.8521 -1.4888 -2.5776 25 6 3.3914 -0.8372 -1.4489 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.0906 0.4939 2.5449 33 1 0.6872 -0.5837 4.9168 34 1 1.8732 0.7425 4.8632 35 1 -0.2964 -2.4976 8.0106 36 1 4.6324 -1.0479 6.7370 37 1 4.2141 0.4775 5.7886 38 1 2.2049 0.8605 7.2896 39 1 2.6222 -0.6648 8.2385 40 1 0.0722 -1.1462 -1.9642 41 1 0.8929 -2.2993 -3.9792 42 1 3.3138 -2.5243 -4.3688 43 1 4.9140 -1.5879 -2.7483 44 1 4.0932 -0.4268 -0.7380 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853663763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:38 Heat of formation + Delta-G solvation = 16.662828 kcal Electronic energy + Delta-G solvation = -24686.567568 eV Core-core repulsion = 21185.908021 eV Total energy + Delta-G solvation = -3500.659547 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.45378 -38.47701 -37.24283 -35.52149 -35.23009 -31.96561 -31.55369 -31.05440 -29.48977 -27.61369 -26.26155 -25.05481 -24.07692 -22.36616 -21.85505 -21.12432 -19.76846 -18.95503 -17.86645 -16.82393 -16.46949 -16.06710 -15.31313 -15.06700 -14.84522 -14.57749 -14.38563 -14.13024 -13.95134 -13.68086 -13.46099 -12.98504 -12.72479 -12.48556 -12.37147 -12.33353 -12.14887 -11.87374 -11.62587 -11.61802 -10.97111 -10.93554 -10.91364 -10.82019 -10.53822 -10.37862 -10.21730 -9.72650 -9.36278 -8.97269 -8.87357 -8.74485 -8.46060 -8.30425 -8.15743 -6.05831 -4.11566 1.29757 1.43482 2.46555 2.92891 3.29926 3.38203 3.46198 3.79480 4.31283 4.41560 4.53108 4.75358 4.82830 4.97859 5.00796 5.04422 5.12006 5.22571 5.33481 5.39550 5.46866 5.49746 5.52498 5.62461 5.64308 5.84178 5.88008 5.96452 5.97724 6.03598 6.14797 6.23858 6.44956 6.48291 6.51070 6.60200 6.60447 6.73622 6.98727 7.01517 7.30521 7.41358 7.52361 7.71165 7.88503 8.37948 8.68516 8.91351 9.54551 11.01876 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018021 B = 0.003498 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.342633 B = 8001.726634 C = 8554.632304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.031 4.031 3 C -0.139 4.139 4 C 0.528 3.472 5 O -0.514 6.514 6 N -0.603 5.603 7 O -0.121 6.121 8 C 0.077 3.923 9 C 0.043 3.957 10 C -0.485 4.485 11 H 0.063 0.937 12 C 0.069 3.931 13 N -0.885 5.885 14 Si 0.892 3.108 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.283 1.283 18 C -0.206 4.206 19 C -0.137 4.137 20 C -0.060 4.060 21 C -0.114 4.114 22 C -0.126 4.126 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.083 4.083 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.396 0.604 33 H 0.061 0.939 34 H 0.030 0.970 35 H 0.260 0.740 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.090 0.910 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.664 8.892 -18.367 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.035 4.035 3 C -0.197 4.197 4 C 0.313 3.687 5 O -0.388 6.388 6 N -0.303 5.303 7 O -0.125 6.125 8 C -0.001 4.001 9 C 0.041 3.959 10 C -0.522 4.522 11 H 0.082 0.918 12 C -0.133 4.133 13 N -0.522 5.522 14 Si 0.720 3.280 15 H -0.195 1.195 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.243 4.243 19 C -0.175 4.175 20 C -0.061 4.061 21 C -0.132 4.132 22 C -0.144 4.144 23 C -0.140 4.140 24 C -0.141 4.141 25 C -0.101 4.101 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.235 0.765 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.109 0.891 40 H 0.144 0.856 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.196 8.017 -18.375 20.049 hybrid contribution -0.742 -0.515 0.557 1.061 sum -0.938 7.502 -17.818 19.356 Atomic orbital electron populations 1.22016 0.91983 1.03385 1.03069 1.19651 0.97329 0.96068 0.90465 1.21919 1.02172 0.92588 1.02979 1.20233 0.81461 0.85005 0.81999 1.90743 1.37524 1.24955 1.85537 1.47624 1.48076 1.34900 0.99661 1.90765 1.58542 1.57034 1.06137 1.22847 0.99699 0.94807 0.82741 1.18632 0.92915 0.94625 0.89726 1.20477 1.08229 0.88839 1.34673 0.91838 1.24983 0.95330 0.97940 0.95083 1.69988 1.17095 1.34132 1.31007 0.86517 0.78360 0.85522 0.77612 1.19491 1.21014 1.20927 1.23023 0.93094 1.02509 1.05670 1.22529 0.99996 0.98594 0.96377 1.19247 0.93713 0.98907 0.94223 1.21120 0.99631 0.98085 0.94364 1.21064 0.95656 0.99935 0.97748 1.21126 0.93496 0.99920 0.99408 1.21105 0.99634 0.98673 0.94650 1.20957 0.94955 0.97770 0.96376 0.91576 0.90734 0.91225 0.91533 0.90978 0.91577 0.76487 0.92066 0.95187 0.93050 0.90068 0.91552 0.91859 0.89114 0.85616 0.86229 0.86370 0.86164 0.86192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 7.03 37.15 0.26 -1.14 16 2 C -0.03 -0.38 0.71 -156.81 -0.11 -0.49 16 3 C -0.14 -1.30 8.19 37.16 0.30 -1.00 16 4 C 0.53 9.14 6.49 -10.98 -0.07 9.07 16 5 O -0.51 -11.41 15.52 -12.57 -0.20 -11.61 16 6 N -0.60 -10.53 6.16 31.22 0.19 -10.33 16 7 O -0.12 -2.79 11.03 -29.60 -0.33 -3.12 16 8 C 0.08 1.71 6.05 37.16 0.22 1.93 16 9 C 0.04 1.07 1.69 -155.66 -0.26 0.81 16 10 C -0.48 -13.65 8.75 -34.44 -0.30 -13.95 16 11 H 0.06 1.86 7.82 -52.48 -0.41 1.45 16 12 C 0.07 1.92 5.43 -17.82 -0.10 1.82 16 13 N -0.88 -24.75 12.65 55.43 0.70 -24.05 16 14 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 15 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 C -0.21 -4.57 9.96 -26.69 -0.27 -4.83 16 19 C -0.14 -3.15 9.14 -26.70 -0.24 -3.40 16 20 C -0.06 -0.78 4.38 -104.62 -0.46 -1.23 16 21 C -0.11 -1.30 8.98 -39.58 -0.36 -1.65 16 22 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 23 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 24 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 25 C -0.08 -1.10 7.93 -39.59 -0.31 -1.42 16 26 H 0.07 0.55 7.46 -51.93 -0.39 0.17 16 27 H 0.07 0.54 7.53 -51.93 -0.39 0.14 16 28 H 0.07 0.73 7.50 -51.93 -0.39 0.35 16 29 H 0.07 0.66 7.39 -51.93 -0.38 0.28 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.54 7.68 -51.93 -0.40 0.14 16 32 H 0.40 5.31 7.41 -40.82 -0.30 5.01 16 33 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.03 0.58 8.10 -51.93 -0.42 0.16 16 35 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 36 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.09 2.23 8.14 -51.93 -0.42 1.81 16 40 H 0.13 1.17 5.89 -52.49 -0.31 0.86 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 42 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 44 H 0.12 1.63 7.52 -52.49 -0.39 1.24 16 LS Contribution 366.72 15.07 5.53 5.53 Total: -1.00 -33.60 366.72 -8.73 -42.33 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.73 Total: 5.18 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -2.88 Total: -20.73 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.89 Total: -34.38 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.52 Total: -14.72 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.60 -8.73 -42.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853663763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.993 kcal (2) G-P(sol) polarization free energy of solvation -33.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds