Wall clock time and date at job start Tue Mar 31 2020 09:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52996 * 109.47696 * 2 1 4 4 C 1.50703 * 109.47242 * 120.00033 * 2 1 3 5 5 O 1.21278 * 120.00360 * 119.99874 * 4 2 1 6 6 N 1.34780 * 119.99732 * 300.00232 * 4 2 1 7 7 O 1.41606 * 119.99743 * 185.01838 * 6 4 2 8 8 C 1.42903 * 113.99725 * 185.01040 * 7 6 4 9 9 C 1.52997 * 109.46974 * 184.97424 * 8 7 6 10 10 C 1.50700 * 115.54919 * 295.65923 * 9 8 7 11 11 H 1.08007 * 119.99590 * 95.20309 * 10 9 8 12 12 C 1.37875 * 120.00078 * 274.92062 * 10 9 8 13 13 N 1.31517 * 120.00219 * 355.43102 * 12 10 9 14 14 Si 1.86795 * 119.99936 * 175.42246 * 12 10 9 15 15 H 1.48498 * 109.47367 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46935 * 120.00360 * 14 12 10 17 17 H 1.48501 * 109.47373 * 240.00657 * 14 12 10 18 18 C 1.53005 * 117.49837 * 81.33061 * 9 8 7 19 19 C 1.52995 * 117.49776 * 149.98892 * 9 8 7 20 20 C 1.50705 * 109.47470 * 239.99671 * 2 1 3 21 21 C 1.38238 * 119.99547 * 359.73199 * 20 2 1 22 22 C 1.38238 * 119.99732 * 179.76782 * 21 20 2 23 23 C 1.38232 * 119.99989 * 0.50039 * 22 21 20 24 24 C 1.38238 * 119.99813 * 359.74885 * 23 22 21 25 25 C 1.38230 * 120.00290 * 0.02562 * 24 23 22 26 26 H 1.09003 * 109.47345 * 300.00169 * 1 2 3 27 27 H 1.09005 * 109.46982 * 60.00303 * 1 2 3 28 28 H 1.09005 * 109.47413 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47879 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.47009 * 300.00311 * 3 2 1 31 31 H 1.09003 * 109.46861 * 59.99535 * 3 2 1 32 32 H 0.96999 * 120.00149 * 5.01631 * 6 4 2 33 33 H 1.09000 * 109.46733 * 64.97552 * 8 7 6 34 34 H 1.09000 * 109.47050 * 304.97362 * 8 7 6 35 35 H 0.96989 * 120.00156 * 184.99864 * 13 12 10 36 36 H 1.08994 * 117.49806 * 215.00394 * 18 9 8 37 37 H 1.08996 * 117.49737 * 0.02562 * 18 9 8 38 38 H 1.09004 * 117.49883 * 359.97438 * 19 9 8 39 39 H 1.09001 * 117.50093 * 144.97283 * 19 9 8 40 40 H 1.08002 * 120.00079 * 359.97438 * 21 20 2 41 41 H 1.08001 * 119.99499 * 180.23005 * 22 21 20 42 42 H 1.07994 * 119.99912 * 179.72840 * 23 22 21 43 43 H 1.08008 * 119.99622 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.00243 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7066 -0.2499 2.4546 7 8 2.2638 -0.8521 3.6088 8 6 1.7467 -0.3399 4.8386 9 6 2.5027 -0.9685 6.0109 10 6 2.3360 -2.4580 6.1679 11 1 3.0650 -3.1309 5.7408 12 6 1.2562 -2.9615 6.8617 13 7 0.4209 -2.1426 7.4628 14 14 0.9795 -4.8069 6.9478 15 1 2.0529 -5.5040 6.1948 16 1 1.0054 -5.2456 8.3663 17 1 -0.3394 -5.1381 6.3511 18 6 3.8600 -0.3666 6.3804 19 6 2.6477 -0.1355 7.2860 20 6 2.0323 -0.7105 -1.2304 21 6 1.1340 -1.2407 -2.1375 22 6 1.5948 -1.8883 -3.2686 23 6 2.9539 -2.0146 -3.4874 24 6 3.8521 -1.4888 -2.5776 25 6 3.3914 -0.8372 -1.4489 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.0906 0.4939 2.5449 33 1 0.6872 -0.5837 4.9168 34 1 1.8732 0.7425 4.8632 35 1 -0.2964 -2.4976 8.0106 36 1 4.6324 -1.0479 6.7370 37 1 4.2141 0.4775 5.7886 38 1 2.2049 0.8605 7.2896 39 1 2.6222 -0.6648 8.2385 40 1 0.0722 -1.1462 -1.9642 41 1 0.8929 -2.2993 -3.9792 42 1 3.3138 -2.5243 -4.3688 43 1 4.9140 -1.5879 -2.7483 44 1 4.0932 -0.4268 -0.7380 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853663763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:37 Heat of formation + Delta-G solvation = -2.090509 kcal Electronic energy + Delta-G solvation = -24687.380773 eV Core-core repulsion = 21185.908021 eV Total energy + Delta-G solvation = -3501.472752 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.55533 -39.68080 -38.92573 -37.18569 -36.33277 -34.05558 -32.97263 -31.90691 -30.41137 -28.35324 -28.13299 -26.99781 -25.06730 -23.27876 -23.00193 -22.84814 -21.40023 -20.42620 -19.19283 -18.13599 -17.78111 -17.63981 -16.86121 -16.49477 -16.18750 -15.93095 -15.77798 -15.32190 -15.21766 -14.93363 -14.63934 -14.30819 -14.01288 -13.77822 -13.56129 -13.35617 -13.22186 -13.03767 -12.97484 -12.90685 -12.65382 -12.47850 -12.43666 -12.13435 -12.02400 -11.76878 -11.66638 -11.51814 -10.95364 -10.82630 -10.47577 -10.13009 -9.81408 -9.74602 -9.62897 -8.17194 -6.28071 0.37665 0.55832 1.04140 1.33295 1.36878 1.48515 1.59211 2.38014 2.88700 3.09951 3.29109 3.39014 3.60312 3.81891 3.87657 3.98089 4.17095 4.19128 4.20079 4.30641 4.39365 4.43609 4.59825 4.65081 4.66391 4.72230 4.80577 4.81888 4.83093 4.87175 4.96441 5.10895 5.17945 5.18652 5.19833 5.23935 5.48285 5.60375 5.61334 5.65276 5.71092 5.71718 5.94494 6.14628 6.32434 6.37743 6.74375 7.30312 7.39940 8.89620 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018021 B = 0.003498 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.342633 B = 8001.726634 C = 8554.632304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.019 4.019 3 C -0.137 4.137 4 C 0.522 3.478 5 O -0.571 6.571 6 N -0.590 5.590 7 O -0.163 6.163 8 C 0.092 3.908 9 C 0.005 3.995 10 C -0.509 4.509 11 H 0.036 0.964 12 C 0.033 3.967 13 N -0.900 5.900 14 Si 0.943 3.057 15 H -0.281 1.281 16 H -0.271 1.271 17 H -0.279 1.279 18 C -0.190 4.190 19 C -0.128 4.128 20 C -0.080 4.080 21 C -0.121 4.121 22 C -0.129 4.129 23 C -0.125 4.125 24 C -0.137 4.137 25 C -0.108 4.108 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.417 0.583 33 H 0.040 0.960 34 H 0.065 0.935 35 H 0.263 0.737 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.132 0.868 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.065 10.229 -20.014 22.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.023 4.023 3 C -0.195 4.195 4 C 0.310 3.690 5 O -0.448 6.448 6 N -0.292 5.292 7 O -0.167 6.167 8 C 0.015 3.985 9 C 0.003 3.997 10 C -0.546 4.546 11 H 0.054 0.946 12 C -0.168 4.168 13 N -0.538 5.538 14 Si 0.769 3.231 15 H -0.206 1.206 16 H -0.196 1.196 17 H -0.204 1.204 18 C -0.227 4.227 19 C -0.165 4.165 20 C -0.081 4.081 21 C -0.139 4.139 22 C -0.147 4.147 23 C -0.143 4.143 24 C -0.155 4.155 25 C -0.126 4.126 26 H 0.098 0.902 27 H 0.125 0.875 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.259 0.741 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.165 0.835 41 H 0.166 0.834 42 H 0.162 0.838 43 H 0.150 0.850 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.619 9.393 -20.008 22.162 hybrid contribution -0.258 -0.958 0.976 1.392 sum -1.877 8.435 -19.032 20.902 Atomic orbital electron populations 1.22099 0.89650 1.03336 1.05400 1.19713 0.98944 0.96633 0.86989 1.21968 1.01515 0.90943 1.05032 1.21492 0.80160 0.84404 0.82906 1.90711 1.40087 1.27691 1.86350 1.47723 1.48245 1.35191 0.98027 1.90716 1.59660 1.58624 1.07720 1.22524 0.97749 0.96275 0.81977 1.18790 0.95515 0.93521 0.91825 1.20614 1.08163 0.90804 1.35051 0.94600 1.25520 0.95132 1.01272 0.94882 1.70031 1.17259 1.35250 1.31223 0.85745 0.77821 0.81542 0.78015 1.20603 1.19607 1.20423 1.23020 0.92044 1.02660 1.04952 1.22436 1.00384 0.99054 0.94657 1.19454 0.93780 0.99865 0.94953 1.21442 1.00540 0.97602 0.94291 1.21477 0.96184 0.99119 0.97905 1.21484 0.93625 0.99352 0.99827 1.21359 1.00770 0.98720 0.94611 1.21025 0.95402 0.99173 0.96994 0.90214 0.87501 0.92465 0.92776 0.88378 0.90012 0.74095 0.94123 0.91741 0.92755 0.90867 0.88863 0.89332 0.91381 0.83483 0.83432 0.83842 0.85020 0.87894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 7.03 71.98 0.51 -1.92 16 2 C -0.02 -0.44 0.71 -53.68 -0.04 -0.48 16 3 C -0.14 -2.29 8.19 71.98 0.59 -1.70 16 4 C 0.52 18.21 6.49 87.66 0.57 18.78 16 5 O -0.57 -26.39 15.52 14.31 0.22 -26.17 16 6 N -0.59 -20.37 6.16 -173.53 -1.07 -21.44 16 7 O -0.16 -7.56 11.03 -21.46 -0.24 -7.80 16 8 C 0.09 4.06 6.05 71.98 0.44 4.50 16 9 C 0.01 0.26 1.69 -52.93 -0.09 0.18 16 10 C -0.51 -29.46 8.75 25.60 0.22 -29.24 16 11 H 0.04 2.20 7.82 -2.91 -0.02 2.18 16 12 C 0.03 1.85 5.43 84.65 0.46 2.31 16 13 N -0.90 -50.53 12.65 21.45 0.27 -50.25 16 14 Si 0.94 45.44 29.54 68.60 2.03 47.47 16 15 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 16 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 18 C -0.19 -8.29 9.96 30.62 0.30 -7.99 16 19 C -0.13 -5.77 9.14 30.62 0.28 -5.49 16 20 C -0.08 -2.00 4.38 -19.86 -0.09 -2.09 16 21 C -0.12 -2.51 8.98 22.27 0.20 -2.31 16 22 C -0.13 -2.42 10.05 22.27 0.22 -2.19 16 23 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 24 C -0.14 -3.19 10.05 22.27 0.22 -2.97 16 25 C -0.11 -2.94 7.93 22.27 0.18 -2.76 16 26 H 0.08 1.09 7.46 -2.39 -0.02 1.07 16 27 H 0.11 1.09 7.53 -2.38 -0.02 1.08 16 28 H 0.06 1.10 7.50 -2.38 -0.02 1.08 16 29 H 0.05 1.04 7.39 -2.39 -0.02 1.02 16 30 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.08 1.09 7.68 -2.39 -0.02 1.07 16 32 H 0.42 10.50 7.41 -92.71 -0.69 9.81 16 33 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.06 2.35 8.10 -2.39 -0.02 2.33 16 35 H 0.26 14.02 8.32 -92.72 -0.77 13.25 16 36 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 37 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 38 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 39 H 0.07 3.36 8.14 -2.39 -0.02 3.34 16 40 H 0.15 2.30 5.89 -2.91 -0.02 2.28 16 41 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 43 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 44 H 0.10 3.02 7.52 -2.91 -0.02 3.00 16 Total: -1.00 -75.62 366.72 5.72 -69.90 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.31 Total: 23.89 kcal Atomic # 6 Polarization: -39.80 SS G_CDS: 4.20 Total: -35.60 kcal Atomic # 7 Polarization: -70.90 SS G_CDS: -0.80 Total: -71.69 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -0.01 Total: -33.97 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -75.62 5.72 -69.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853663763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.813 kcal (2) G-P(sol) polarization free energy of solvation -75.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds